Weekly research seminar
Organizers
- prof. dr hab. Anna Gambin
- dr Aleksander Jankowski
- dr hab. Bartosz Wilczyński
Information
Wednesdays, 10:15 a.m. , room: 5820Home page
http://bioputer.mimuw.edu.pl/seminars/bob/Research fields
List of talks
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April 5, 2023, 10:15 a.m.
Karol Wróblewski (CNBCh UW)
CABS-flex as a de novo structure prediction tool for cyclic peptides
Cyclic peptides have become an attractive class of molecules in drug design due to their diverse biological activities and increased stability. However, their design and synthesis can be challenging due to their complex three-dimensional structures. …
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March 29, 2023, 10:15 a.m.
Teresa Przytycka (National Library of Medicine/National Institutes of Health)
Delineating interactions between mutational signatures, cellular processes, and environment through computational approaches
Cancer genomes accumulate many somatic mutations resulting from carcinogenic exposures, cancer-related aberrations of DNA maintenance machinery, and normal stochastic events. These processes often lead to distinctive patterns of mutations, called mutational signatures. However interpreting mutation …
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March 22, 2023, 10:15 a.m.
Andrzej Mizera (MIM UW)
Divide & Control: An Efficient Decomposition-based Approach Towards the Control of Asynchronous Boolean Networks
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March 15, 2023, 10:15 a.m.
Magda Markowska (MIM UW)
CONSET: joint copy number and single nucleotide variant event tree model of evolutionary tumor history for single-cell data
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March 8, 2023, 10:15 a.m.
Stanisław Jastrzębski (Molecule.one)
On the Implications of the Simplicity Bias in Deep Nets for the “AI Scientist”: The Good, The Bad, and The Ugly
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March 1, 2023, 10:15 a.m.
Magdalena Machnicka (MIM UW)
Analysis of trans-homolog chromatin interactions based on Hi-C data
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Jan. 25, 2023, 10:15 a.m.
Michał Ciach (MIM UW)
The interkingdom gene transfer in 44 basal fungi and the open problems in large scale phylogenetic studies of horizontal gene transfer
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Jan. 18, 2023, 10:15 a.m.
Agnieszka Geras (MiNI PW; MIM UW)
A novel probabilistic model for cell type identification in spatial transcriptomics and single-cell RNA sequencing data
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Jan. 11, 2023, 10:15 a.m.
Barbara Poszewiecka (MIM UW)
From 48 to 46 chromosomes: a novel targeted assembler of segmental duplications unravels the complexity of the HSA2 fusion
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Nov. 30, 2022, 10:15 a.m.
Marta Stępniewska-Dziubińska (NVIDIA)
Deep Learning for Drug Discovery at NVIDIA
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Nov. 23, 2022, 10:15 a.m.
Aleksandra Cabaj (Nencki Institute of Experimental Biology)
Modelling the impact of Hypoxia Inducible Factors binding on gene expression in human endothelial cells during hypoxia
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Nov. 16, 2022, 10:15 a.m.
Michał Burdukiewicz (Autonomous University of Barcelona)
The impact of negative data sampling on antimicrobial peptide prediction
Peptydy to krótkie łańcuchy aminokwasowe, które pełnią wiele ważnych biologicznych funkcji (np. przeciwdrobnoustrojowe). Z tych względów badacze poszukują nowych peptydów o potencjalnie istotnych funkcjach, co jednak jest bardzo czaso- i kosztochłonne w warunkach laboratoryjnych. Dlatego …