Seminar Computational Biology and Bioinformatics

Organizers

• prof. dr hab. Anna Gambin
• dr Aleksander Jankowski
• dr hab. Bartosz Wilczyński, prof. ucz.

Information

Home page

Research fields

• Computational Biology and Bioinformatics

List of talks

• April 22, 2026, 10:15 a.m.
  Paulina Szymczak (Helmholtz Munich)
  Controllable Generative AI for Antimicrobial Peptides: From Design to Evaluation
  

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• April 15, 2026, 10:15 a.m.
  Jarosław Paszek (MIM UW)
  Biopsy-Aware Phylogenetic Reconstruction of Cancer Evolution Using Single-Cell Copy Number Profiles
  

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• April 8, 2026, 10:15 a.m.
  Michał Ciach (University of Malta)
  A general framework for the estimation of optimal substitution matrices and gap penalties for pairwise sequence alignment
  

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• April 1, 2026, 10:15 a.m.
  Kamil Deja (IDEAS Research Institute and Warsaw University of Technology)
  Mechanistic Interpretability in Generative Biological Models: Leveraging Internal Activations for Antimicrobial Discovery and Protein Design
  

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• March 25, 2026, 10:15 a.m.
  Konrad Łukaszyk (CeNT UW)
  Smad transcription factor binding sites during BMP overactivation
  

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• March 18, 2026, 10:15 a.m.
  Jan Paweł Jastrzębski (University of Warmia and Mazury in Olsztyn)
  Computational identification of long non-coding RNAs: Challenges and standardized solutions in the RNA-seq era
  

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• March 11, 2026, 10:15 a.m.
  Piotr Bentkowski, Jakub Olędzki (Military Institute of Medicine)
  Regional Digital Medicine Center at the Military Institute of Medicine – call to use our data, hardware and expertise in your research projects
  

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• March 4, 2026, 10:15 a.m.
  Ewa Szczurek (MIM UW and Helmholtz Munich)
  Controllable generative AI for molecule design
  

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• Feb. 25, 2026, 10:15 a.m.
  Antoni Goldstein (MIM UW)
  Indirect elemental analysis of historical inks
  

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• Jan. 21, 2026, 10:15 a.m.
  Barbara Domżał (MIM UW)
  Recent Advances in Wasserstein-Based Analysis of NMR Spectroscopy Data
  

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• Jan. 14, 2026, 10:15 a.m.
  Norbert Dojer (MIM UW)
  Comparison and transformation of pangenome graphs
  

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• Jan. 7, 2026, 10:15 a.m.
  Joanna Krawczyk (Ingenix.ai)
  Biology in the era of Foundational Models
  

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• Dec. 17, 2025, 10:15 a.m.
  Jan Olszewski (MIM UW)
  MATTS atom types and their use case in analyzing representations of deep neural networks
  

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• Dec. 10, 2025, 10:15 a.m.
  Simone Ciccolella (University of Milano-Bicocca)
  Modelling and combinatorial approaches for Pangenomics
  

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• Dec. 3, 2025, 10:15 a.m.
  Brendonas Stakauskas (Vilnius University)
  Use of Protein Language Models for Phylogenetic Analysis
  

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