Organizers

prof. dr hab. Anna Gambin
dr Aleksander Jankowski
dr hab. Bartosz Wilczyński, prof. ucz.

Information

Wednesdays, 10:15 a.m. , room: 3250

Home page

https://bioputer.mimuw.edu.pl/seminars/bob/

Research fields

Computational Biology and Bioinformatics

List of talks

Dec. 21, 2022, 10:15 a.m.
Marcin Możejko (MIM UW)
Set and graph auto-encoders for the IMC data
Dec. 14, 2022, 10:15 a.m.
Szymon Nowakowski (MIM UW)
AlphaFold2 from the engineering perspective
Dec. 7, 2022, 10:15 a.m.
Paweł Górecki (MIM UW)
COCOON 2022 paper with N. Rutecka and J. Tiuryn (Rooting gene trees via phylogenetic networks)
Nov. 30, 2022, 10:15 a.m.
Marta Stępniewska-Dziubińska (NVIDIA)
Deep Learning for Drug Discovery at NVIDIA
Nov. 23, 2022, 10:15 a.m.
Aleksandra Cabaj (Nencki Institute of Experimental Biology)
Modelling the impact of Hypoxia Inducible Factors binding on gene expression in human endothelial cells during hypoxia
Nov. 16, 2022, 10:15 a.m.
Michał Burdukiewicz (Autonomous University of Barcelona)
The impact of negative data sampling on antimicrobial peptide prediction
Peptydy to krótkie łańcuchy aminokwasowe, które pełnią wiele ważnych biologicznych funkcji (np. przeciwdrobnoustrojowe). Z tych względów badacze poszukują nowych peptydów o potencjalnie istotnych funkcjach, co jednak jest bardzo czaso- i kosztochłonne w warunkach laboratoryjnych. Dlatego …
Nov. 9, 2022, 10:15 a.m.
Ewa Szczurek (MIM UW)
mock ERC interview (Deep optimized generation methods and models for antimicrobial peptide discovery)
Oct. 26, 2022, 10:15 a.m.
Martin Vingron (Max Planck Institute for Molecular Genetics)
"Association Plots" and joint clustering and embedding of genes and cells
Single-cell transcriptome analysis poses many problems in visualizing and analyzing data. Based on the geometric interpretation of correspondence analysis biplots we define "Association Plots" to depict genes that characterize ("are associated with") a cluster of …
Oct. 19, 2022, 10:15 a.m.
Jakub Karasiński; Piotr Radziński (CNBCh UW; MIM UW)
Ideas on the isotope ratio measurements by MC-ICP-MS: Elimination of isotope standard
Oct. 12, 2022, 10:15 a.m.
Grzegorz Skoraczyński (MIM UW)
Alignstein: optimal transport and retention time alignment
Oct. 5, 2022, 10:15 a.m.
-
Organizational meeting
June 15, 2022, 10:15 a.m.
Norbert Dojer (MIM UW)
Cross-correlation analysis of optical mapping data
June 1, 2022, 10:15 a.m.
Patrycja Rosa (MIM UW and Nencki Institute of Experimental Biology)
Exploring gene expression features concordant with Topologically Associating Domains
May 25, 2022, 10:15 a.m.
Stanisław Dunin-Horkawicz (CeNT UW)
Exploring proteins and their interactions with the aid of computational tools
May 18, 2022, 10:15 a.m.
Oliver Eulenstein (Iowa State University)
Problems in Phylogenetic Diversity