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Weekly research seminar.
Organizers
- prof. dr hab. Anna Gambin
- dr Aleksander Jankowski
- dr hab. Bartosz Wilczyński, prof. ucz.
Information
Wednesdays, 10:15 a.m. , room: 3250Home page
https://bioputer.mimuw.edu.pl/seminars/bob/Research fields
List of talks
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March 29, 2023, 10:15 a.m.
Teresa Przytycka (National Library of Medicine/National Institutes of Health)
Delineating interactions between mutational signatures, cellular processes, and environment through computational approaches
Cancer genomes accumulate many somatic mutations resulting from carcinogenic exposures, cancer-related aberrations of DNA maintenance machinery, and normal stochastic events. These processes often lead to distinctive patterns of mutations, called mutational signatures. However interpreting mutation …
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March 22, 2023, 10:15 a.m.
Andrzej Mizera (MIM UW)
Divide & Control: An Efficient Decomposition-based Approach Towards the Control of Asynchronous Boolean Networks
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March 15, 2023, 10:15 a.m.
Magda Markowska (MIM UW)
CONSET: joint copy number and single nucleotide variant event tree model of evolutionary tumor history for single-cell data
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March 8, 2023, 10:15 a.m.
Stanisław Jastrzębski (Molecule.one)
On the Implications of the Simplicity Bias in Deep Nets for the “AI Scientist”: The Good, The Bad, and The Ugly
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March 1, 2023, 10:15 a.m.
Magdalena Machnicka (MIM UW)
Analysis of trans-homolog chromatin interactions based on Hi-C data
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Jan. 25, 2023, 10:15 a.m.
Michał Ciach (MIM UW)
The interkingdom gene transfer in 44 basal fungi and the open problems in large scale phylogenetic studies of horizontal gene transfer
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Jan. 18, 2023, 10:15 a.m.
Agnieszka Geras (MiNI PW; MIM UW)
A novel probabilistic model for cell type identification in spatial transcriptomics and single-cell RNA sequencing data
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Jan. 11, 2023, 10:15 a.m.
Barbara Poszewiecka (MIM UW)
From 48 to 46 chromosomes: a novel targeted assembler of segmental duplications unravels the complexity of the HSA2 fusion
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Dec. 7, 2022, 10:15 a.m.
Paweł Górecki (MIM UW)
COCOON 2022 paper with N. Rutecka and J. Tiuryn (Rooting gene trees via phylogenetic networks)
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Nov. 30, 2022, 10:15 a.m.
Marta Stępniewska-Dziubińska (NVIDIA)
Deep Learning for Drug Discovery at NVIDIA
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Nov. 23, 2022, 10:15 a.m.
Aleksandra Cabaj (Nencki Institute of Experimental Biology)
Modelling the impact of Hypoxia Inducible Factors binding on gene expression in human endothelial cells during hypoxia
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Nov. 16, 2022, 10:15 a.m.
Michał Burdukiewicz (Autonomous University of Barcelona)
The impact of negative data sampling on antimicrobial peptide prediction
Peptydy to krótkie łańcuchy aminokwasowe, które pełnią wiele ważnych biologicznych funkcji (np. przeciwdrobnoustrojowe). Z tych względów badacze poszukują nowych peptydów o potencjalnie istotnych funkcjach, co jednak jest bardzo czaso- i kosztochłonne w warunkach laboratoryjnych. Dlatego …
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Nov. 9, 2022, 10:15 a.m.
Ewa Szczurek (MIM UW)
mock ERC interview (Deep optimized generation methods and models for antimicrobial peptide discovery)
