Seminar Computational Biology and Bioinformatics

Organizers

• prof. dr hab. Anna Gambin
• dr Aleksander Jankowski
• dr hab. Bartosz Wilczyński, prof. ucz.

Information

Home page

Research fields

• Computational Biology and Bioinformatics

List of talks

• June 11, 2025, 10:15 a.m.
  Łucja Kowalewska; Szymon Nowakowski (Faculty of Biology, UW; MIM UW and Center4ML, Faculty of Physics, UW)
  Automated Recognition of Membrane Nanostructural Assemblies: Neural Networks Meet Electron Microscopy
  

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• June 4, 2025, 10:15 a.m.
  Marcin Możejko (MIM UW)
  Discovering Clinically Relevant Cellular Neighborhoods Using Cellohood
  

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• May 28, 2025, 10:15 a.m.
  Maria Bochenek, Justyna Król (MIM UW)
  Network simplex based alignment of multidimensional spectra
  

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• May 21, 2025, 10:15 a.m.
  Piotr Radziński (MIM UW)
  Computational methods for leading-edge mass spectrometry techniques
  

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• May 21, 2025, 10:15 a.m.
  Jagoda Trzeciak (MIM UW)
  Web application for uncertainty estimation in mass spectrometry measurements
  

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• May 14, 2025, 10:15 a.m.
  Krzysztof Gogolewski (MIM UW)
  SpaceLet: Detecting Infiltration Patterns in Spatially Resolved Imaging Data
  

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• April 30, 2025, 10:15 a.m.
  Adam Cicherski (MIM UW)
  Efficient indexing and querying at pangenome scale
  

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• April 9, 2025, 10:15 a.m.
  Kazimierz Oksza-Orzechowski (MIM UW)
  FACTMx: flexible multimodal autoencoding
  

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• March 26, 2025, 10:15 a.m.
  Sebastian Deorowicz (Silesian University of Technology)
  Ultrafast and accurate sequence alignment and clustering of viral genomes
  Viromics produces millions of viral genomes and fragments annually, overwhelming traditional sequence comparison methods. We introduce Vclust, an approach that determines average nucleotide identity by Lempel-Ziv parsing and clusters viral genomes with thresholds endorsed by …

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• March 12, 2025, 10:15 a.m.
  Krzysztof Koras (MIM UW)
  Drug-target interaction prediction with deep multi-modal contrastive learning
  

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• March 5, 2025, 10:15 a.m.
  Boštjan Gabrovšek (University of Ljubljana)
  Topological invariants of bonded knots and applications to protein entanglement
  

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• Feb. 26, 2025, 10:15 a.m.
  Eugene Baulin (IMol PAS)
  Revisiting the base pair maximization approach for RNA secondary structure prediction with SQUARNA
  

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• Jan. 22, 2025, 10:15 a.m.
  Bartek Wilczyński (MIM UW)
  Recent developments in deep learning approaches to enhancer prediction and design – a literature review
  

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• Jan. 15, 2025, 10:15 a.m.
  Paweł Górecki (MIM UW)
  Cophenetic distances in near-linear time
  

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• Jan. 8, 2025, 10:15 a.m.
  Barbara Wagner, Aleksandra Towarek, Barbara Domżał (CNBCh UW and MIM UW)
  Investigating the Constitution of 3 May Using LA-ICP-MS and Neural Networks
  

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