Index of /~lukaskoz/teaching/adp/labs/lab_3dmodelling

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]run_esm_fold.py2025-05-30 17:58 5.7K 
[ ]pdb_seqres_proteins.pto2025-04-04 20:37 3.4M 
[ ]pdb_seqres_proteins.ptf2025-04-04 20:37 16K 
[ ]pdb_seqres_proteins.psq2025-04-04 20:37 254M 
[TXT]pdb_seqres_proteins.pot2025-04-04 20:37 10M 
[ ]pdb_seqres_proteins.pjs2025-04-04 20:37 571  
[ ]pdb_seqres_proteins.pin2025-04-04 20:37 6.9M 
[ ]pdb_seqres_proteins.phr2025-04-04 20:37 107M 
[ ]pdb_seqres_proteins.pdb2025-04-04 20:37 20K 
[ ]pdb_seqres_proteins.fas2025-05-30 14:16 307M 
[TXT]pdb_seqres.txt2025-03-30 01:22 324M 
[ ]orf7a_seqrecord.xml2025-04-04 22:03 6.3K 
[ ]orf7a_pure.xml2025-04-04 22:02 6.5K 
[TXT]orf7a_local.txt2025-04-04 20:45 4.0K 
[TXT]orf7a_blast_local_IDENTITY.txt2025-04-11 09:48 7.6K 
[TXT]orf7a_blast_local_BLOSUM90.txt2025-04-11 09:44 4.0K 
[TXT]orf7a_blast_local_BLAST95.txt2025-04-11 09:46 0  
[TXT]orf7a_blast_local_BLAST90_outfmt.txt2025-04-11 10:09 234  
[ ]orf7a_blast_local.xml2025-04-04 21:26 6.4K 
[TXT]orf7a_blast_local.txt2025-04-11 09:42 4.0K 
[ ]orf7a.fasta2025-04-04 19:46 238  
[DIR]ncbi-blast-2.16.0+/2024-06-25 20:31 -  
[IMG]grep_screenshot.png2025-05-30 20:17 215K 
[TXT]foldseek_api.py2025-05-31 10:12 2.4K 
[DIR]ecoli/2025-04-04 18:28 -  
[TXT]compare_fastas.py2025-05-30 15:10 4.4K 
[TXT]clean_seqres_biopython.py2025-04-07 12:47 1.1K 
[TXT]clean_seqres.py2025-04-07 12:46 963  
[TXT]blast_parsing_summary.txt2025-05-30 14:15 2.2K 
[TXT]blast_biopyton_api.py2025-04-04 19:42 1.7K 
[TXT]blast_biopython_parser.py2025-04-04 21:47 902  
[TXT]blast_biopython_api_old.py2025-04-04 20:51 702  
[TXT]blast_biopython_api.py2025-04-04 19:58 580  
[TXT]blast_biopython_all_parser.py2025-04-04 22:47 1.4K 
[ ]af3_esm_chimera_session2.tar.gz2025-06-04 14:35 98K 
[TXT]af3_esm_chimera_session2.py2025-05-30 19:41 236K 
[ ]af3_esm_chimera_session.tar.gz2025-06-04 14:35 109K 
[TXT]af3_esm_chimera_session.py2025-05-30 19:12 263K 
[ ]UP000464024_2697049_normalized.fasta2025-05-30 14:54 16K 
[ ]UP000464024_2697049_blast_local.xml2025-04-04 22:29 36M 
[TXT]UP000464024_2697049_blast_local.txt2025-04-04 21:11 33M 
[ ]UP000464024_2697049.idmapping2025-02-05 17:40 263K 
[ ]UP000464024_2697049.fasta2025-05-30 14:16 16K 
[IMG]PDB_P0DTC9_screenshot.png2025-05-30 17:09 82K 
[ ]P0DTG0_esm.pdb2025-04-04 22:41 37K 
[TXT]IDENTITY.txt2025-04-11 09:48 7.6K 
[IMG]Foldseek_ESM.png2025-05-31 09:08 95K 
[IMG]Foldseek_AF3.png2025-05-31 09:09 183K 
[DIR]ESM_models/2025-05-31 08:58 -  
[IMG]Chimera_P0DTC9_screenshot.png2025-05-30 17:19 164K 
[DIR]AF3_models/2025-05-30 16:23 -  
[IMG]AF3_P0DTD2_screenshot.png2025-05-30 18:37 87K 
[IMG]AF3_P0DTC9_screenshot.png2025-05-30 16:38 146K 
[IMG]AF3_ESM_P0DTD2_Chimera2.png2025-05-30 19:19 51K 
[IMG]AF3_ESM_P0DTD2_Chimera.png2025-05-30 19:09 76K 
[ ]A0A663DJA2_esm.pdb2025-04-04 22:34 26K 
[ ]9cj6_P0DTC9_superimposed.pdb2025-05-30 17:37 419K 
[ ]9cj6.pdb2025-05-30 16:49 228K 
[ ]9cj6.cif2025-05-30 16:48 307K 
[ ]6z4u_chimera_session.tar.gz2025-06-04 14:35 261K 
[ ]6z4u_chimera_session.pyc2025-05-30 21:09 1.0M 
[TXT]6z4u_chimera_session.py2025-05-30 20:52 1.1M 
[IMG]6z4u_A_vs_ESM_Chimera.png2025-05-30 20:49 42K 
[IMG]6z4u_A_vs_AF3_Chimera.png2025-05-30 20:44 41K 
[ ]6z4u.pdb2025-05-30 20:21 239K 
[VID]6z4u.mp42025-05-30 20:36 635K 
[ ]6z4u.cif2025-05-30 20:21 305K 
[ ]2cme.pdb2025-05-30 18:04 434K 
[ ]2cme.cif2025-05-30 18:04 503K 
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