BLASTP 2.16.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: pdb_seqres_proteins.fas
           904,157 sequences; 265,710,038 total letters



Query= sp|P0DTC7|NS7A_SARS2 ORF7a protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=7a PE=1 SV=1

Length=121
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

7ci3_A mol:protein length:84 Orf7a protein                            177     3e-58
1xak_A mol:protein length:83 SARS ORF7A ACCESSORY PROTEIN             159     8e-51
1yo4_A mol:protein length:87 Hypothetical protein X4                  158     2e-50
6w37_A mol:protein length:67 ORF7a protein                            145     1e-45


>7ci3_A mol:protein length:84  Orf7a protein
Length=84

 Score = 177 bits (449),  Expect = 3e-58, Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)

Query  14  TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH  73
           TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH
Sbjct  2   TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH  61

Query  74  VYQLRARSVSPKLFIRQEEVQEL  96
           VYQLRARSVSPKLFIRQEEVQEL
Sbjct  62  VYQLRARSVSPKLFIRQEEVQEL  84


>1xak_A mol:protein length:83  SARS ORF7A ACCESSORY PROTEIN
Length=83

 Score = 159 bits (401),  Expect = 8e-51, Method: Compositional matrix adjust.
 Identities = 72/82 (88%), Positives = 76/82 (93%), Gaps = 0/82 (0%)

Query  14  TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH  73
           +CELYHYQECVRGTTV+LKEPC SGTYEGNSPFHPLADNKFALTC ST FAFAC DG +H
Sbjct  1   SCELYHYQECVRGTTVILKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRH  60

Query  74  VYQLRARSVSPKLFIRQEEVQE  95
            YQLRARSVSPKLFIRQEEVQ+
Sbjct  61  TYQLRARSVSPKLFIRQEEVQQ  82


>1yo4_A mol:protein length:87  Hypothetical protein X4
Length=87

 Score = 158 bits (399),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 76/84 (90%), Positives = 77/84 (92%), Gaps = 1/84 (1%)

Query  16  ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY  75
           ELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC ST FAFAC DG +H Y
Sbjct  3   ELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTY  62

Query  76  QLRARSVSPKLFIRQEEV-QELYS  98
           QLRARSVSPKLFIRQEEV QELYS
Sbjct  63  QLRARSVSPKLFIRQEEVQQELYS  86


>6w37_A mol:protein length:67  ORF7a protein
Length=67

 Score = 145 bits (366),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 67/67 (100%), Positives = 67/67 (100%), Gaps = 0/67 (0%)

Query  16  ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY  75
           ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY
Sbjct  1   ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY  60

Query  76  QLRARSV  82
           QLRARSV
Sbjct  61  QLRARSV  67



Lambda      K        H        a         alpha
   0.329    0.140    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 6578338760


  Database: pdb_seqres_proteins.fas
    Posted date:  Apr 4, 2025  8:37 PM
  Number of letters in database: 265,710,038
  Number of sequences in database:  904,157



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40