BLASTP 2.16.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: pdb_seqres_proteins.fas 904,157 sequences; 265,710,038 total letters Query= sp|P0DTC7|NS7A_SARS2 ORF7a protein OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=7a PE=1 SV=1 Length=121 Score E Sequences producing significant alignments: (Bits) Value 7ci3_A mol:protein length:84 Orf7a protein 177 3e-58 1xak_A mol:protein length:83 SARS ORF7A ACCESSORY PROTEIN 159 8e-51 1yo4_A mol:protein length:87 Hypothetical protein X4 158 2e-50 6w37_A mol:protein length:67 ORF7a protein 145 1e-45 >7ci3_A mol:protein length:84 Orf7a protein Length=84 Score = 177 bits (449), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%) Query 14 TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH 73 TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH Sbjct 2 TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH 61 Query 74 VYQLRARSVSPKLFIRQEEVQEL 96 VYQLRARSVSPKLFIRQEEVQEL Sbjct 62 VYQLRARSVSPKLFIRQEEVQEL 84 >1xak_A mol:protein length:83 SARS ORF7A ACCESSORY PROTEIN Length=83 Score = 159 bits (401), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 72/82 (88%), Positives = 76/82 (93%), Gaps = 0/82 (0%) Query 14 TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH 73 +CELYHYQECVRGTTV+LKEPC SGTYEGNSPFHPLADNKFALTC ST FAFAC DG +H Sbjct 1 SCELYHYQECVRGTTVILKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRH 60 Query 74 VYQLRARSVSPKLFIRQEEVQE 95 YQLRARSVSPKLFIRQEEVQ+ Sbjct 61 TYQLRARSVSPKLFIRQEEVQQ 82 >1yo4_A mol:protein length:87 Hypothetical protein X4 Length=87 Score = 158 bits (399), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 76/84 (90%), Positives = 77/84 (92%), Gaps = 1/84 (1%) Query 16 ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY 75 ELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC ST FAFAC DG +H Y Sbjct 3 ELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTY 62 Query 76 QLRARSVSPKLFIRQEEV-QELYS 98 QLRARSVSPKLFIRQEEV QELYS Sbjct 63 QLRARSVSPKLFIRQEEVQQELYS 86 >6w37_A mol:protein length:67 ORF7a protein Length=67 Score = 145 bits (366), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 67/67 (100%), Positives = 67/67 (100%), Gaps = 0/67 (0%) Query 16 ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY 75 ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY Sbjct 1 ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY 60 Query 76 QLRARSV 82 QLRARSV Sbjct 61 QLRARSV 67 Lambda K H a alpha 0.329 0.140 0.429 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6578338760 Database: pdb_seqres_proteins.fas Posted date: Apr 4, 2025 8:37 PM Number of letters in database: 265,710,038 Number of sequences in database: 904,157 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40