BLASTP 2.16.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: pdb_seqres_proteins.fas
904,157 sequences; 265,710,038 total letters
Query= sp|P0DTC7|NS7A_SARS2 ORF7a protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=7a PE=1 SV=1
Length=121
Score E
Sequences producing significant alignments: (Bits) Value
7ci3_A mol:protein length:84 Orf7a protein 307 1e-90
1yo4_A mol:protein length:87 Hypothetical protein X4 260 5e-73
6w37_A mol:protein length:67 ORF7a protein 248 4e-71
1xak_A mol:protein length:83 SARS ORF7A ACCESSORY PROTEIN 250 6e-70
5eov_A mol:protein length:220 16S/23S rRNA (cytidine-2'-O)-methyl... 34.3 1.3
5kyg_A mol:protein length:225 Cytotoxin / haemolysin homologue TlyA 34.3 1.3
5ks2_A mol:protein length:225 16S/23S rRNA (cytidine-2'-O)-methyl... 34.3 1.3
7s0s_B mol:protein length:284 16S/23S rRNA (Cytidine-2'-O)-methyl... 34.3 1.3
6g79_S mol:protein length:364 5-hydroxytryptamine receptor 1B 31.4 9.6
5v54_B mol:protein length:395 5-hydroxytryptamine receptor 1B,OB-... 31.4 9.7
5v54_A mol:protein length:395 5-hydroxytryptamine receptor 1B,OB-... 31.4 9.7
7c61_A mol:protein length:399 5-hydroxytryptamine receptor 1B,Sol... 31.4 9.7
4iar_A mol:protein length:401 Chimera protein of human 5-hydroxyt... 31.4 9.7
4iaq_A mol:protein length:403 Chimera protein of human 5-hydroxyt... 31.4 9.7
>7ci3_A mol:protein length:84 Orf7a protein
Length=84
Score = 307 bits (747), Expect = 1e-90
Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)
Query 14 TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH 73
TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH
Sbjct 2 TCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKH 61
Query 74 VYQLRARSVSPKLFIRQEEVQEL 96
VYQLRARSVSPKLFIRQEEVQEL
Sbjct 62 VYQLRARSVSPKLFIRQEEVQEL 84
>1yo4_A mol:protein length:87 Hypothetical protein X4
Length=87
Score = 260 bits (632), Expect = 5e-73
Identities = 76/84 (90%), Positives = 76/84 (90%), Gaps = 1/84 (1%)
Query 16 ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY 75
ELYHYQECVRGTTVLLKEPC SGTYEGNSPFHPLADNKFALTC ST FAFAC DG H Y
Sbjct 3 ELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTY 62
Query 76 QLRARSVSPKLFIRQEEV-QELYS 98
QLRARSVSPKLFIRQEEV QELYS
Sbjct 63 QLRARSVSPKLFIRQEEVQQELYS 86
>6w37_A mol:protein length:67 ORF7a protein
Length=67
Score = 248 bits (603), Expect = 4e-71
Identities = 67/67 (100%), Positives = 67/67 (100%), Gaps = 0/67 (0%)
Query 16 ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY 75
ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY
Sbjct 1 ELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVY 60
Query 76 QLRARSV 82
QLRARSV
Sbjct 61 QLRARSV 67
>1xak_A mol:protein length:83 SARS ORF7A ACCESSORY PROTEIN
Length=83
Score = 250 bits (608), Expect = 6e-70
Identities = 72/80 (90%), Positives = 72/80 (90%), Gaps = 0/80 (0%)
Query 15 CELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHV 74
CELYHYQECVRGTTV LKEPC SGTYEGNSPFHPLADNKFALTC ST FAFAC DG H
Sbjct 2 CELYHYQECVRGTTVILKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHT 61
Query 75 YQLRARSVSPKLFIRQEEVQ 94
YQLRARSVSPKLFIRQEEVQ
Sbjct 62 YQLRARSVSPKLFIRQEEVQ 81
>5eov_A mol:protein length:220 16S/23S rRNA (cytidine-2'-O)-methyltransferase
TlyA
Length=220
Score = 34.3 bits (79), Expect = 1.3
Identities = 11/15 (73%), Positives = 11/15 (73%), Gaps = 0/15 (0%)
Query 68 PDGVKHVYQLRARSV 82
P GV H QLRARSV
Sbjct 146 PGGVVHDPQLRARSV 160
>5kyg_A mol:protein length:225 Cytotoxin / haemolysin homologue
TlyA
Length=225
Score = 34.3 bits (79), Expect = 1.3
Identities = 11/15 (73%), Positives = 11/15 (73%), Gaps = 0/15 (0%)
Query 68 PDGVKHVYQLRARSV 82
P GV H QLRARSV
Sbjct 151 PGGVVHDPQLRARSV 165
>5ks2_A mol:protein length:225 16S/23S rRNA (cytidine-2'-O)-methyltransferase
TlyA
Length=225
Score = 34.3 bits (79), Expect = 1.3
Identities = 11/15 (73%), Positives = 11/15 (73%), Gaps = 0/15 (0%)
Query 68 PDGVKHVYQLRARSV 82
P GV H QLRARSV
Sbjct 151 PGGVVHDPQLRARSV 165
>7s0s_B mol:protein length:284 16S/23S rRNA (Cytidine-2'-O)-methyltransferase
TlyA
Length=284
Score = 34.3 bits (79), Expect = 1.3
Identities = 11/15 (73%), Positives = 11/15 (73%), Gaps = 0/15 (0%)
Query 68 PDGVKHVYQLRARSV 82
P GV H QLRARSV
Sbjct 210 PGGVVHDPQLRARSV 224
>6g79_S mol:protein length:364 5-hydroxytryptamine receptor 1B
Length=364
Score = 31.4 bits (72), Expect = 9.6
Identities = 8/8 (100%), Positives = 8/8 (100%), Gaps = 0/8 (0%)
Query 7 LALITLAT 14
LALITLAT
Sbjct 24 LALITLAT 31
>5v54_B mol:protein length:395 5-hydroxytryptamine receptor 1B,OB-1
fused 5-HT1b receptor,5-hydroxytryptamine receptor 1B
Length=395
Score = 31.4 bits (72), Expect = 9.7
Identities = 8/8 (100%), Positives = 8/8 (100%), Gaps = 0/8 (0%)
Query 7 LALITLAT 14
LALITLAT
Sbjct 20 LALITLAT 27
>5v54_A mol:protein length:395 5-hydroxytryptamine receptor 1B,OB-1
fused 5-HT1b receptor,5-hydroxytryptamine receptor 1B
Length=395
Score = 31.4 bits (72), Expect = 9.7
Identities = 8/8 (100%), Positives = 8/8 (100%), Gaps = 0/8 (0%)
Query 7 LALITLAT 14
LALITLAT
Sbjct 20 LALITLAT 27
>7c61_A mol:protein length:399 5-hydroxytryptamine receptor 1B,Soluble
cytochrome b562,5-hydroxytryptamine receptor 1B
Length=399
Score = 31.4 bits (72), Expect = 9.7
Identities = 8/8 (100%), Positives = 8/8 (100%), Gaps = 0/8 (0%)
Query 7 LALITLAT 14
LALITLAT
Sbjct 25 LALITLAT 32
>4iar_A mol:protein length:401 Chimera protein of human 5-hydroxytryptamine
receptor 1B and E. Coli soluble cytochrome b562
Length=401
Score = 31.4 bits (72), Expect = 9.7
Identities = 8/8 (100%), Positives = 8/8 (100%), Gaps = 0/8 (0%)
Query 7 LALITLAT 14
LALITLAT
Sbjct 27 LALITLAT 34
>4iaq_A mol:protein length:403 Chimera protein of human 5-hydroxytryptamine
receptor 1B and E. Coli soluble cytochrome b562
Length=403
Score = 31.4 bits (72), Expect = 9.7
Identities = 8/8 (100%), Positives = 8/8 (100%), Gaps = 0/8 (0%)
Query 7 LALITLAT 14
LALITLAT
Sbjct 27 LALITLAT 34
Lambda K H a alpha
0.289 0.282 1.70 0.170 0.168
Gapped
Lambda K H a alpha sigma
0.283 0.255 1.49 0.190 0.246 0.227
Effective search space used: 27076546880
Database: pdb_seqres_proteins.fas
Posted date: Apr 4, 2025 8:37 PM
Number of letters in database: 265,710,038
Number of sequences in database: 904,157
Matrix: IDENTITY
Gap Penalties: Existence: 15, Extension: 2
Neighboring words threshold: 27
Window for multiple hits: 40