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I am a postdoctoral fellow in Furlong Group at the European Molecular Biology Laboratory in Heidelberg, Germany.
Formerly, I was a Ph.D. student within the Computational Biology Group at the Faculty of Mathematics, Informatics and Mechanics at the University of Warsaw.
During that time, I spent two years at the Genome Institute of Singapore.
My research is focused on computational biology, regulatory genomics and machine learning.
Publications
- Wang, X., Srivastava, Y., Jankowski, A., Malik, V., Wei, Y., del Rosario, R. C.-H., Cojocaru, V., Prabhakar, S. and Jauch, R. DNA-mediated dimerization on a compact sequence signature controls enhancer engagement and regulation by FOXA1 Nucleic Acids Research 46, 5470–5486 (2018)
- Jankowski, A., Tiuryn, J. and Prabhakar, S. Romulus: Robust multi-state identification of transcription factor binding sites from DNase-seq data Bioinformatics 32, 2419–2426 (2016)
- Jankowski, A., Obara, P., Mathur, U. and Tiuryn, J. Enhanceosome transcription factors preferentially dimerize with high mobility group proteins BMC Systems Biology 10, 14 (2016)
- Huang, Y.-H., Jankowski, A., Cheah, K.S., Prabhakar, S. and Jauch, R. SOXE transcription factors form selective dimers on non-compact DNA motifs through multifaceted interactions between dimerization and high-mobility group domains. Scientific Reports 5, 10398 (2015)
- Jankowski, A., Prabhakar, S. and Tiuryn, J. TACO: a general-purpose tool for predicting cell-type–specific transcription factor dimers. BMC Genomics 15, 208 (2014)
- Jankowski, A., Szczurek, E., Jauch, R., Tiuryn, J. and Prabhakar, S. Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers. Genome Research 23, 1307–1318 (2013)
- Kursa, M.B., Jankowski, A. and Rudnicki, W.R. Boruta – a system for feature selection. Fundamenta Informaticae 101, 271–285 (2010)
- Rudnicki, W.R., Jankowski, A., Modzelewski, A., Piotrowski, A. and Zadrożny, A. The new SIMD implementation of the Smith-Waterman algorithm on Cell microprocessor. Fundamenta Informaticae 96, 181–194 (2009)
- My list of publications on Google Scholar
- My profile on ResearchGate
Software
- TACO: Transcription factor Association from Complex Overrepresentation, predicting overrepresented motif complexes in genome-wide sets of regulatory regions
- Romulus: Robust multi-state identification of transcription factor binding sites from DNase-seq data
Teaching
Slides, notes, etc.
Varia
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