Publications

Journal: PLoS Computational Biology

2025

• Paweł Górecki , Alexey Markin, Sriram Vijendran, Oliver Eulenstein, Computing generalized cophenetic distances under all Lp norms: A near-linear time algorithmic framework, PLoS Computational Biology, 21 (6) 2025, p. e1013069. See in PBN

2021

• Hanjue Xia, Johannes Horn, Monika Piotrowska , Konrad Sakowski , André Karch, Hannan Tahir, Mirjam Kretzschmar, Rafael Mikolajczyk, Effects of incomplete inter-hospital network data on the assessment of transmission dynamics of hospital-acquired infections, PLoS Computational Biology, 17 (5) 2021, p. e1008941:1-18. See in PBN
• Hannan Tahir, Luis Eduardo López-Cortés, Axel Kola, Dafna Yahav, André Karch, Hanjue Xia, Johannes Horn, Konrad Sakowski , Monika Piotrowska , Leonard Leibovici, Rafael T. Mikolajczyk, Mirjam E. Kretzschmar, Relevance of intra-hospital patient movements for the spread of healthcare-associated infections within hospitals - a mathematical modeling study, PLoS Computational Biology, 17 (2) 2021, p. e1008600:1-23. See in PBN

2020

• Monika Piotrowska , Konrad Sakowski , André Karch, Hannan Tahir, Johannes Horn, Mirjam E. Kretzschmar, Rafael T. Mikolajczyk, Modelling pathogen spread in a healthcare network: Indirect patient movements, PLoS Computational Biology, 16 (11) 2020, p. e1008442. See in PBN

2017

• Dariusz Matlak, Ewa Szczurek , Epistasis in genomic and survival data of cancer patients, PLoS Computational Biology, 13 (7) 2017, p. 1-16. See in PBN

2014

• Niko Beerenwinkel, Ewa Szczurek , Modeling mutual exclusivity of cancer mutations, PLoS Computational Biology, 2014. See in PBN

2012

• Eileen EM Furlong, Ya-Hsin Liu, Bartosz Wilczyński , Zhen-Xuan Yeo, Predicting Spatial and Temporal Gene Expression Using an Integrative Model of Transcription Factor Occupancy and Chromatin State, PLoS Computational Biology, 2012. See in PBN