About Me
Research Directions
Computational medicine and molecular biology, machine learning for cancer research, spatial and spatiotemporal modeling of cellular processes, and integrative analysis of -omics data.
Current Work
- Principal Investigator of the SONATA project funded by the National Science Centre (NCN), focusing on computational methods for modeling tumor immune infiltration in spatial imaging data.
- Co-supervising a PhD student within the SPACETIME consortium, in collaboration with Ewa Szczurek Lab, developing novel models for spatiotemporal multimodal data.
- Actively involved in the IMMUcan consortium, with dedicated Postdoctoral funding awarded by the consortium to support my research on spatial immune cell infiltration patterns — hosted at the University of Warsaw as part of the IMMUcan initiative.
- Collaboration with Maciej Dobrzyński (Pertz Lab, University of Bern) on modeling ERK and AKT signaling dynamics from live-cell imaging data.
- Evolutionary origins of the human chromosome 2 fusion event in collaboration with Anna Gambin and Pawel Stankiewicz Labs — see our recent article in Genome Biology.
News
Jun 29, 2025: I had the pleasure of presenting at the Genomics Preprint Club — a vibrant forum where researchers discuss cutting-edge advances in genomics through openly shared preprints. Grateful for the engaging questions and stimulating discussion!
Feb 24, 2025: Congratulations to my Master's student, Stanisław Janik, on the successful defense of his thesis on the detection and classification of renal glomeruli. A well-executed project at the intersection of computational pathology and medical image analysis!
Sep 14, 2024: It's been an amazing week at Ascona Workshop: Spatial and temporal statistical modeling in molecular biology. Hopefully some new collaborations will emerge soon!
May 23, 2024: My proposal Computational methods for understanding tumor immune microenvironment from spatial imaging data was selected for funding in the SONATA 19 call by National Science Centre Poland!
Apr 11, 2024: Networking and presenting poster at Munich Health Foundation Model Syposium by Helmholtz Munich -- seems like Foundation Models may be leading solutions in biomed research soon.
Sep 30, 2023: It has been an amazing semester - three master theses related to tumor microenvironment modeling were defended. Amazing work guys!
Jun 03, 2023: Final article within COVID-19 epidemiology research published in eLife, a collaboration of European modeling teams.
Oct 31, 2022: Our collaboration with German institues resulted in the next paper: Short-term forecasting of COVID-19 in Germany and Poland during early 2021 has been published in Communications Medicine.
Aug 30, 2022: Revised time estimation of the ancestral human chromosome 2 fusion published in BMC Genomics.
Jul 25, 2022: Research paper on Case Fatality Rate in Poland during the first SARS-CoV-2 lineage published in Methods.
Jul 06, 2022: TADEUS2 - a web server for clinical diagnosis based on structural variations in the human genome had been published by Nucleic Acid Research An amazing work of the first author Basia Poszewiecka!
Mar 03, 2022: Our model to predict the effect of introducing the vaccination passess is now out in Communications Medicine
