chrom pos1 pos2 chrom2 pos3 pos4 hydraID support strand1 strand2 meanMismatch1 meanMismatch2 numMappings1 numMappings2 mapQ1 mapQ2 numCancerCalls numNormalCalls numIndCalls variantClass genotypeClass sample(s) the break was found in qPOS1 qPOS2 qPOS3 qPOS4 minNonOverlap contigLength homology break_readCount leftRef_readCount rightRef_readCount allele frequency Complexity Class cgrID 1 1370240 1370514 8 13708886 13709174 5670882 11 + - 2 2 1 1 150 139 1 0 1 INTER cancer_singleSample OV_11_T 323 840 20 319 300 845 -4 10 22 14 0,357143 simple NA 1 1929373 1929484 1 1933476 1933700 3842221 4 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 643 766 0 644 122 768 1 7 23 27 0,21875 simple NA 1 3454237 3454412 1 8511349 8511599 4371460 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T 600 1093 0 602 491 1093 2 5 3 7 0,5 simple NA 1 3676820 3676968 1 76957950 76958069 4384738 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_3_T 68 136 134 444 66 491 2 18 33 19 0,409091 simple NA 1 6303332 6303446 1 8662465 8662702 4562661 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T 0 611 607 887 276 893 4 5 5 9 0,416667 extreme_oneoff GBM_13_T;chainID=1 1 6396205 6396311 1 8689355 8689488 4568604 4 + + 0 0 1 1 121 150 1 0 1 INTRA cancer_singleSample GBM_13_T 663 842 0 659 180 881 -4 8 10 12 0,421053 extreme_oneoff GBM_13_T;chainID=1 1 6611056 6611221 1 6613594 6613824 4583760 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_9_T 0 622 620 937 315 968 2 5 4 3 0,588235 simple NA 1 6672303 6672538 19 56599980 56600089 18523160 3 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 174 582 0 175 174 586 1 5 12 4 0,384615 simple NA 1 7090780 7091030 1 60304955 60305209 4625948 13 + - 0 0 1 1 125 90 1 0 1 INTRA cancer_singleSample LUAD_6_T 618 709 0 617 92 743 -1 10 1 28 0,408163 mild_oneoff LUAD_6_T;chainID=1 1 7515413 7515532 1 8683090 8683238 4667776 4 - - 0 0 1 1 150 124 1 0 1 INTRA cancer_singleSample GBM_13_T 3 629 629 1245 616 1245 0 10 13 13 0,434783 extreme_oneoff GBM_13_T;chainID=1 1 7517175 7517317 1 8781980 8782132 4667916 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T 63 351 348 1007 285 1007 3 10 10 11 0,487805 extreme_oneoff GBM_13_T;chainID=1 1 7590490 7590694 20 35646470 35646706 18563113 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T 39 190 205 813 152 813 -15 11 28 44 0,234043 simple NA 1 7813832 7814013 1 8504093 8504366 4694417 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_13_T 0 604 603 1219 603 1219 1 12 12 11 0,510638 simple NA 1 7836622 7836721 1 8451160 8451248 4695779 4 - + 0 0 1 1 150 122 1 0 1 DUP cancer_singleSample OV_3_T 39 489 489 781 292 834 0 1 12 17 0,0645161 simple NA 1 8031173 8031357 1 220706955 220707244 4712651 14 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T 7 177 174 561 167 603 3 25 10 18 0,641026 simple NA 1 8071848 8072071 1 220728709 220728963 4715947 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T 399 704 182 399 217 742 0 6 18 24 0,222222 simple NA 1 8483047 8483275 3 189205361 189205603 5128131 9 + - 2 1 1 1 150 150 1 0 1 INTER cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_5_T;chainID=1 1 8662134 8662267 1 8700311 8700464 4766129 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_13_T 11 598 595 694 96 694 3 NA NA NA NA extreme_oneoff GBM_13_T;chainID=1 1 8662450 8662595 1 8700382 8700601 4766143 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_13_T 638 685 0 638 47 746 0 7 18 30 0,225806 extreme_oneoff GBM_13_T;chainID=1 1 8663190 8663299 1 8708867 8709022 4766215 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_13_T 588 849 260 591 258 861 3 6 8 15 0,342857 extreme_oneoff GBM_13_T;chainID=1 1 8663761 8663882 1 35971087 35971297 4766303 6 - + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T 626 924 0 630 294 932 4 9 16 10 0,409091 extreme_oneoff GBM_13_T;chainID=1 1 8664123 8664237 1 29579822 29579944 4766337 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T 499 839 9 502 337 854 3 11 16 7 0,488889 extreme_oneoff GBM_13_T;chainID=1 1 8699913 8700065 1 35940156 35940291 4769061 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_13_T;chainID=1 1 9161452 9161579 1 204570469 204570615 4806091 3 + + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 9201454 9201564 1 9282790 9282891 4808812 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 9692276 9692353 1 10637075 10637172 4844402 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_3_T 362 589 3 386 203 590 24 0 20 15 0 simple NA 1 9711423 9711649 3 189205121 189205305 5130158 4 - + 2 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_5_T 0 374 372 573 199 612 2 8 31 28 0,213333 mild_oneoff OV_5_T;chainID=1 1 9912811 9913037 22 24514091 24514340 18565530 6 + + 2 3 1 1 150 150 1 0 1 INTER cancer_singleSample OV_4_T 0 485 484 1031 484 1048 1 8 9 8 0,484848 simple NA 1 9965593 9965689 11 78021473 78021703 18203552 6 - - 2 0 1 1 78 103 1 0 1 INTER cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 10406910 10407107 X 107076697 107076918 2411056 5 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 0 678 675 769 91 769 3 NA NA NA NA simple NA 1 10530761 10530846 1 10534787 10535028 3062202 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 78 442 33 80 45 497 2 7 6 3 0,608696 simple NA 1 10946825 10947080 20 40856274 40856522 18561299 11 + - 0 0 1 1 150 125 1 0 1 INTER cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise BRCA_1_T;chainID=1 1 10947195 10947422 1 227527625 227527795 3097374 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise BRCA_1_T;chainID=1 1 10950212 10950450 20 40856288 40856539 18561300 10 + + 0 0 1 1 150 115 1 0 1 INTER cancer_singleSample BRCA_1_T 343 948 80 345 263 948 2 13 9 1 0,722222 mild_stepwise BRCA_1_T;chainID=1 1 10985223 10985448 1 11005413 11005652 3098939 8 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 11066914 11067161 12 121175984 121176098 18204209 4 - + 0 0 1 1 150 100 1 0 1 INTER cancer_singleSample OV_10_T 5 150 148 607 143 607 2 4 0 8 0,5 simple NA 1 11511845 11511960 1 11512451 11512700 3130742 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 177 684 0 183 177 687 6 5 0 5 0,666667 simple NA 1 11988570 11988681 1 11989003 11989103 3165447 3 + - 0 0 1 1 107 108 1 0 1 DEL cancer_singleSample OV_6_T 56 203 224 460 148 466 -21 1 22 9 0,0606061 simple NA 1 12517941 12518103 1 117085034 117085198 3294031 14 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T 0 630 628 949 319 952 2 10 19 15 0,37037 simple NA 1 12793244 12793340 12 75857508 75857586 18206364 3 - + 0 2 1 1 106 78 1 0 1 INTER cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 12913483 12913588 13 99329078 99329218 18279000 3 + - 4 3 1 1 42 60 1 0 1 INTER cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 14053796 14053959 1 30564417 30564659 3316046 5 + - 0 0 1 1 127 150 1 0 1 INTRA cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 14499014 14499135 1 14501147 14501285 3373517 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 0 530 528 596 66 696 2 11 18 19 0,372881 simple NA 1 14572295 14572397 14 89540937 89541207 18325824 3 + - 5 2 1 1 75 150 1 0 1 INTER cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 15127618 15127791 1 15143890 15144082 3449410 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T 594 772 0 598 174 773 4 9 6 9 0,545455 simple NA 1 15304420 15304589 1 15364075 15364345 3467335 5 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_1_T 351 806 28 352 323 808 1 5 14 9 0,30303 simple NA 1 15391192 15391449 1 15393893 15394189 3473134 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 605 981 8 604 377 1012 -1 1 3 18 0,0869565 simple NA 1 15471020 15471135 20 52823000 52823146 18561606 5 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_10_T 45 587 586 712 125 725 1 1 8 19 0,0689655 simple NA 1 15495110 15495298 11 34455766 34455952 18194370 4 - - 0 3 1 1 150 136 1 0 1 INTER cancer_singleSample OV_5_T 0 604 601 754 150 812 3 7 20 13 0,297872 simple NA 1 15755566 15755766 11 34810385 34810584 18194401 10 + + 5 4 1 1 150 148 1 0 1 INTER cancer_singleSample OV_5_T 29 519 518 626 107 626 1 0 11 2 0 simple NA 1 16030303 16030399 22 41313865 41314010 18564457 4 - - 0 1 1 1 139 124 1 0 1 INTER cancer_singleSample GBM_8_T 16 534 533 769 235 776 1 8 7 14 0,432432 simple NA 1 16382204 16382460 1 16389848 16390009 3570915 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 346 757 24 348 322 760 2 7 11 8 0,424242 simple NA 1 16858031 16858170 1 26467148 26467359 3613873 5 - + 1 0 1 1 116 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 16863394 16863517 1 149289208 149289318 3614489 3 + - 4 6 1 1 32 117 1 0 1 INTRA cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 16872902 16873149 1 23409085 23409958 3616793 12 - - 0 0 1 1 36 143 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 16891620 16891712 1 27097263 27097391 3624341 4 - - 2 0 1 1 86 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 16902182 16902273 1 19777334 19777499 3631270 4 + + 0 1 1 1 41 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 16907147 16907385 1 19531822 19532121 3633229 18 + + 0 0 1 1 35 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 16918973 16919354 1 20967413 20967782 3636442 14 - + 1 2 1 1 45 130 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 16926484 16926575 1 51678307 51678456 3637742 4 - + 1 4 1 1 82 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 16931086 16931440 1 52246624 52246980 3638244 31 + + 0 1 1 1 83 145 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 16941934 16942230 1 26790271 26790587 3639512 7 + + 2 2 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 16949971 16950160 1 51786242 51786440 3640305 10 - + 2 2 1 1 31 138 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 16957630 16957863 1 22219054 22219282 3641261 6 - + 1 2 1 1 95 101 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 16962997 16963222 1 23784323 23784516 3641841 11 - + 1 1 1 1 84 148 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 17007788 17007994 1 19876655 19876985 3647381 7 - - 1 0 1 1 92 52 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 17051396 17051603 1 20351341 20351546 3652202 10 + - 2 0 1 1 140 137 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 17052226 17052537 1 51608058 51608383 3652404 18 - - 0 0 1 1 95 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 17083460 17083617 1 21215470 21215618 3656205 7 - + 0 0 1 1 32 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 17209330 17209576 22 42413054 42413323 18564586 10 - + 0 0 1 1 139 146 1 0 1 INTER cancer_singleSample GBM_8_T 123 595 3 119 117 609 -4 6 23 17 0,230769 simple NA 1 17215609 17215912 1 19496737 19497075 3669173 7 + - 3 2 1 1 70 148 1 0 1 INTRA cancer_singleSample GBM_6_T 0 586 588 652 65 652 -2 NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 17219862 17220176 1 19466861 19467239 3671065 17 - + 0 2 1 1 123 148 1 0 1 INTRA cancer_singleSample GBM_6_T 0 534 534 674 140 685 0 8 18 4 0,421053 extreme_oneoff GBM_6_T;chainID=1 1 19434616 19434972 6 123945393 123945757 5219951 33 + - 1 0 1 1 145 150 1 0 1 INTER cancer_singleSample GBM_6_T 588 727 0 589 138 734 1 9 14 3 0,514286 extreme_oneoff GBM_6_T;chainID=1 1 19453820 19454218 1 27095450 27095845 3854855 21 - + 0 0 1 1 149 150 1 0 1 INTRA cancer_singleSample GBM_6_T 14 410 409 719 309 727 1 8 7 15 0,421053 extreme_oneoff GBM_6_T;chainID=1 1 19482733 19483100 1 90547252 90547618 3857281 22 - - 0 0 1 1 150 149 1 0 1 INTRA cancer_singleSample GBM_6_T 0 583 583 787 204 787 0 9 17 18 0,339623 extreme_oneoff GBM_6_T;chainID=1 1 19490684 19490955 1 27072104 27072383 3857813 16 + - 0 0 1 1 150 141 1 0 1 INTRA cancer_singleSample GBM_6_T 575 702 0 576 126 713 1 0 12 11 0 extreme_oneoff GBM_6_T;chainID=1 1 19509419 19509764 1 52491010 52491352 3859447 24 + + 0 1 1 1 149 100 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 19531799 19531883 1 24850909 24851046 3861721 3 - - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 19555514 19555729 1 52452035 52452246 3863602 8 + - 0 3 1 1 150 84 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 19572222 19572553 1 26447563 26447894 3864995 24 - + 1 3 1 1 111 142 1 0 1 INTRA cancer_singleSample GBM_6_T 318 469 7 319 150 505 1 3 8 9 0,26087 extreme_oneoff GBM_6_T;chainID=1 1 19578292 19578609 1 19784998 19785314 3865463 7 - + 2 0 1 1 140 141 1 0 1 DUP cancer_singleSample GBM_6_T 0 572 568 1182 568 1182 4 5 0 4 0,714286 extreme_oneoff GBM_6_T;chainID=1 1 19589165 19589484 1 234918419 234918751 3866286 12 + + 2 2 1 1 138 149 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 19604056 19604272 1 19634487 19634800 3867551 6 + + 3 4 1 1 111 67 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 19605281 19605591 1 24733905 24734256 3867679 13 - - 1 2 1 1 137 122 1 0 1 INTRA cancer_singleSample GBM_6_T 83 380 23 83 60 386 0 9 12 8 0,473684 extreme_oneoff GBM_6_T;chainID=1 1 19690436 19690785 1 20619961 20620320 3875048 15 - - 0 2 1 1 150 146 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 19727477 19727856 1 26308973 26309355 3878234 29 + + 1 0 1 1 144 149 1 0 1 INTRA cancer_singleSample GBM_6_T 0 507 505 784 277 795 2 12 11 14 0,489796 extreme_oneoff GBM_6_T;chainID=1 1 19754540 19754761 1 26674692 26674959 3880299 14 + + 3 2 1 1 103 142 1 0 1 INTRA cancer_singleSample GBM_6_T 153 811 17 156 136 811 3 8 7 3 0,615385 extreme_oneoff GBM_6_T;chainID=1 1 19768737 19769010 1 21910901 21911193 3881284 8 - + 1 2 1 1 144 150 1 0 1 INTRA cancer_singleSample GBM_6_T 0 619 616 667 48 674 3 NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 19778834 19779180 1 21896177 21896548 3881914 16 - + 1 0 1 1 147 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 19790551 19790673 1 21711805 21711988 3882489 5 + + 0 1 1 1 86 105 1 0 1 INTRA cancer_singleSample GBM_6_T 34 211 211 676 177 676 0 4 11 13 0,25 extreme_oneoff GBM_6_T;chainID=1 1 19884786 19885109 1 19910455 19910738 3891161 13 + + 1 2 1 1 135 135 1 0 1 INV cancer_singleSample GBM_6_T 350 476 0 366 110 484 16 0 8 5 0 extreme_oneoff GBM_6_T;chainID=1 1 19894552 19894874 1 19988797 19989144 3891911 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_6_T 41 476 473 550 74 564 3 NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 19906367 19906477 1 26617309 26617423 3892788 4 + + 1 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 19908656 19908759 1 23409301 23409600 3893202 4 - + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 19908663 19908768 1 23409322 23409552 3893203 6 + - 2 1 1 1 139 137 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 20009609 20009766 1 22167468 22167642 3902608 4 + - 0 2 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 20065009 20065346 1 23793219 23793569 3906265 16 - - 1 3 1 1 144 115 1 0 1 INTRA cancer_singleSample GBM_6_T 39 513 512 689 176 691 1 3 11 8 0,24 extreme_oneoff GBM_6_T;chainID=1 1 20093444 20093793 1 27026765 27027108 3907865 18 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T 426 1008 0 426 426 1008 0 7 10 12 0,388889 extreme_oneoff GBM_6_T;chainID=1 1 20260642 20261014 1 26383539 26383916 3915398 21 - + 0 2 1 1 149 143 1 0 1 INTRA cancer_singleSample GBM_6_T 24 418 413 853 389 856 5 2 6 6 0,25 extreme_oneoff GBM_6_T;chainID=1 1 20321690 20321785 1 26414019 26414229 3918527 3 + + 1 0 1 1 98 111 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 20327404 20327763 1 26359407 26359779 3918776 32 + + 0 2 1 1 108 143 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 20399022 20399105 1 21038950 21039077 3923532 4 - - 0 2 1 1 150 150 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 20406184 20406496 1 22855369 22855646 3924009 20 + - 1 1 1 1 149 148 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 20473097 20473314 1 26799617 26799792 3927075 4 + - 1 5 1 1 150 129 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 20701274 20701462 1 20726937 20727314 3936965 7 - - 1 2 1 1 134 140 1 0 1 INV cancer_singleSample GBM_6_T 31 528 526 771 243 773 2 12 1 5 0,8 extreme_oneoff GBM_6_T;chainID=1 1 20719749 20720117 1 26472249 26472593 3938350 20 + - 0 3 1 1 150 136 1 0 1 INTRA cancer_singleSample GBM_6_T 575 780 0 576 204 780 1 5 11 8 0,344828 extreme_oneoff GBM_6_T;chainID=1 1 20890468 20890823 1 21598283 21598625 3950648 21 - - 0 2 1 1 115 148 1 0 1 INV cancer_singleSample GBM_6_T 132 328 7 133 125 328 1 9 1 5 0,75 extreme_oneoff GBM_6_T;chainID=1 1 20907693 20908016 1 23068659 23069027 3952196 20 + - 0 4 1 1 150 139 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 20911514 20911877 1 26154793 26155138 3952566 14 - - 1 2 1 1 150 113 1 0 1 INTRA cancer_singleSample GBM_6_T 0 548 546 933 385 933 2 5 11 10 0,322581 extreme_oneoff GBM_6_T;chainID=1 1 20916714 20917077 1 20926398 20926783 3953150 24 + - 1 2 1 1 148 131 1 0 1 DEL cancer_singleSample GBM_6_T 0 343 341 520 177 534 2 11 2 9 0,666667 extreme_oneoff GBM_6_T;chainID=1 1 20952064 20952420 1 22570408 22570794 3955777 11 + - 1 0 1 1 147 149 1 0 1 INTRA cancer_singleSample GBM_6_T 36 194 192 612 156 640 2 3 10 4 0,3 extreme_oneoff GBM_6_T;chainID=1 1 20954924 20955122 1 51862189 51862488 3956031 16 - - 0 0 1 1 118 149 1 0 1 INTRA cancer_singleSample GBM_6_T 31 243 239 723 208 750 4 6 9 10 0,387097 extreme_oneoff GBM_6_T;chainID=1 1 21011772 21011884 1 51709615 51709716 3960147 4 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21011963 21012118 1 24736718 24736843 3960162 4 + + 1 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21014966 21015291 1 22120227 22120542 3960308 12 - - 2 1 1 1 137 116 1 0 1 INTRA cancer_singleSample GBM_6_T 22 219 216 362 143 485 3 3 0 5 0,545455 extreme_oneoff GBM_6_T;chainID=1 1 21023269 21023369 1 26421480 26421616 3961201 4 + - 2 3 1 1 147 124 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21024976 21025262 1 21881458 21881773 3961262 8 - - 0 2 1 1 144 36 1 0 1 INV cancer_singleSample GBM_6_T 401 719 62 403 316 720 2 7 7 0 0,666667 extreme_oneoff GBM_6_T;chainID=1 1 21056474 21056729 1 24628350 24628697 3962970 11 - + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T 5 347 341 695 336 703 6 6 9 12 0,363636 extreme_oneoff GBM_6_T;chainID=1 1 21058826 21059104 1 26384470 26384826 3963166 19 + - 1 1 1 1 146 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21096263 21096400 1 26751948 26752167 3966026 8 - - 1 1 1 1 146 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21096521 21096625 1 22578487 22578589 3966056 6 - + 2 3 1 1 139 131 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21116861 21117082 1 23406562 23406874 3968109 15 + + 2 0 1 1 126 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21184774 21185109 1 23306694 23307068 3972074 23 - + 1 0 1 1 150 111 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21192682 21192952 1 25462013 25462373 3972559 20 + - 1 3 1 1 149 143 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21207962 21208132 1 24196033 24196247 3973476 5 - - 4 3 1 1 60 55 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21210918 21211275 1 25406592 25406983 3973669 41 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T 0 200 199 773 199 782 1 5 13 10 0,30303 extreme_oneoff GBM_6_T;chainID=1 1 21211792 21211878 1 25376578 25376783 3973704 3 - + 2 4 1 1 150 145 1 0 1 INTRA cancer_singleSample GBM_6_T 0 582 592 689 98 693 -10 6 15 7 0,352941 extreme_oneoff GBM_6_T;chainID=1 1 21232568 21232810 1 21263808 21264174 3975499 13 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21262680 21262985 1 25965554 25965827 3977445 14 - + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21263163 21263459 1 24972934 24973094 3977454 11 + + 0 2 1 1 150 143 1 0 1 INTRA cancer_singleSample GBM_6_T 0 658 657 776 118 797 1 4 8 10 0,307692 extreme_oneoff GBM_6_T;chainID=1 1 21263413 21263533 1 21279448 21279576 3977465 4 + + 2 0 1 1 140 150 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21269977 21270327 1 25550561 25550931 3977778 23 + - 0 1 1 1 150 142 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21273146 21273511 1 26122360 26122754 3978116 17 - - 0 0 1 1 150 147 1 0 1 INTRA cancer_singleSample GBM_6_T 580 924 5 582 342 924 2 1 10 5 0,117647 extreme_oneoff GBM_6_T;chainID=1 1 21279297 21279461 1 24972939 24973093 3978303 4 + - 1 1 1 1 150 135 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21280552 21280857 1 26688637 26688973 3978361 16 - - 0 1 1 1 114 146 1 0 1 INTRA cancer_singleSample GBM_6_T 614 842 0 614 228 845 0 12 11 4 0,615385 extreme_oneoff GBM_6_T;chainID=1 1 21294446 21294792 1 26265898 26266263 3979098 30 + + 0 2 1 1 148 146 1 0 1 INTRA cancer_singleSample GBM_6_T 0 195 193 772 193 820 2 4 11 12 0,258065 extreme_oneoff GBM_6_T;chainID=1 1 21306834 21307131 1 23004554 23004887 3979876 11 - - 1 0 1 1 145 148 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21333029 21333295 1 22741836 22742136 3981372 10 + - 1 2 1 1 150 141 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21334719 21335093 1 22176305 22176650 3981482 11 - + 0 2 1 1 99 142 1 0 1 DUP cancer_singleSample GBM_6_T 575 827 0 576 251 853 1 3 16 2 0,25 extreme_oneoff GBM_6_T;chainID=1 1 21335972 21336121 1 24850836 24851221 3981706 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T 112 432 431 968 319 977 1 4 8 15 0,258065 extreme_oneoff GBM_6_T;chainID=1 1 21410955 21411326 1 26048471 26048852 3988242 21 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T 184 474 0 190 184 474 6 10 5 15 0,5 extreme_oneoff GBM_6_T;chainID=1 1 21426399 21426697 1 23409561 23409890 3989553 17 + + 0 0 1 1 150 145 1 0 1 INTRA cancer_singleSample GBM_6_T 0 584 586 902 317 905 -2 3 6 20 0,1875 extreme_oneoff GBM_6_T;chainID=1 1 21427851 21428052 1 23237042 23237284 3989699 7 - + 1 2 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21435053 21435276 1 22482377 22482647 3990315 11 + - 0 2 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21467888 21468196 1 22574656 22574955 3992273 20 - + 1 2 1 1 143 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21495501 21495743 1 21596691 21596915 3994352 6 + + 1 1 1 1 148 148 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21554725 21554984 1 23822063 23822358 4000234 11 - + 1 0 1 1 150 134 1 0 1 INTRA cancer_singleSample GBM_6_T 496 621 0 497 124 755 1 6 6 12 0,4 extreme_oneoff GBM_6_T;chainID=1 1 21556141 21556498 1 22553631 22553989 4000391 18 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_6_T 0 310 310 555 245 555 0 8 7 7 0,533333 extreme_oneoff GBM_6_T;chainID=1 1 21556732 21557087 1 26063337 26063713 4000421 35 + - 0 1 1 1 133 147 1 0 1 INTRA cancer_singleSample GBM_6_T 9 530 529 697 167 698 1 6 8 9 0,413793 extreme_oneoff GBM_6_T;chainID=1 1 21565908 21565990 1 26358585 26358696 4001223 3 - + 3 2 1 1 117 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21566019 21566257 1 22577192 22577442 4001232 5 - + 1 2 1 1 150 142 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21583073 21583418 1 26752023 26752396 4002463 14 + - 4 0 1 1 140 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21585658 21585752 1 23519314 23519422 4002677 3 - - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21606820 21606945 1 51756765 51756877 4004456 4 + - 2 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T 0 434 434 634 200 638 0 6 1 12 0,48 extreme_oneoff GBM_6_T;chainID=1 1 21654353 21654602 1 26033184 26033443 4009231 8 + - 3 2 1 1 147 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21654630 21654719 1 22491153 22491256 4009258 3 + + 1 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21699639 21699973 1 21827150 21827538 4012916 16 - - 3 1 1 1 118 126 1 0 1 INV cancer_singleSample GBM_6_T 0 190 185 542 185 543 5 0 9 11 0 extreme_oneoff GBM_6_T;chainID=1 1 21716185 21716438 1 23404798 23405060 4014539 8 - - 2 0 1 1 101 150 1 0 1 INTRA cancer_singleSample GBM_6_T 27 194 193 268 74 272 1 NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21731611 21731948 1 51756592 51756960 4015871 14 + - 1 1 1 1 144 139 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21779175 21779530 1 26302121 26302507 4020089 25 - - 1 1 1 1 82 149 1 0 1 INTRA cancer_singleSample GBM_6_T 200 792 0 206 200 792 6 7 15 13 0,333333 extreme_oneoff GBM_6_T;chainID=1 1 21836724 21836956 1 22730241 22730500 4024781 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 242 781 20 240 221 799 -2 6 14 31 0,210526 simple NA 1 21860789 21860982 1 22136113 22136368 4026378 9 + + 0 1 1 1 144 124 1 0 1 INV cancer_singleSample GBM_6_T 268 561 27 271 241 561 3 4 7 20 0,228571 extreme_oneoff GBM_6_T;chainID=1 1 21863664 21863797 1 23409466 23409615 4026585 4 - - 4 1 1 1 132 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21897106 21897375 1 26354197 26354531 4029340 9 - + 1 2 1 1 137 146 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 21973522 21973860 1 22710232 22710583 4036305 12 - - 2 1 1 1 148 144 1 0 1 INV cancer_singleSample GBM_6_T 0 581 574 891 310 906 7 6 7 4 0,521739 extreme_oneoff GBM_6_T;chainID=1 1 21996421 21996694 1 26152722 26152869 4038285 6 + + 0 2 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22116364 22116687 1 23918444 23918787 4047484 12 + + 1 3 1 1 150 136 1 0 1 INTRA cancer_singleSample GBM_6_T 0 238 237 818 237 818 1 3 16 6 0,214286 extreme_oneoff GBM_6_T;chainID=1 1 22141346 22141679 1 52396944 52397259 4050458 13 - + 4 1 1 1 130 149 1 0 1 INTRA cancer_singleSample GBM_6_T 591 925 0 591 334 970 0 0 1 11 0 extreme_oneoff GBM_6_T;chainID=1 1 22146118 22146331 1 22222842 22223043 4050848 9 - + 0 2 1 1 150 142 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 22146584 22146748 7 103968303 103968533 5622864 8 + + 2 2 1 1 147 147 1 0 1 INTER cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 22161823 22162027 1 23088466 23088742 4052552 9 + + 1 1 1 1 141 148 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22180392 22180688 1 52397602 52397963 4054245 15 - - 1 0 1 1 148 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22221837 22222175 1 24730665 24731006 4058239 26 - + 2 1 1 1 148 145 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22222455 22222829 1 234913416 234913816 4058253 18 + + 1 1 1 1 149 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22248892 22248988 1 23805313 23805665 4061008 4 - - 3 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22319716 22320059 1 22467593 22467956 4066987 14 - - 1 1 1 1 66 143 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22479726 22479996 1 22572433 22572785 4076397 7 + + 0 5 1 1 150 124 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22502950 22503130 1 26058246 26058425 4078269 7 + + 2 2 1 1 125 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22505267 22505501 1 22638223 22638500 4078466 7 - - 0 1 1 1 150 142 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22543814 22543948 1 25378240 25378398 4083847 7 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T 0 713 710 773 60 797 3 NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22554224 22554496 1 26170154 26170436 4085104 12 + - 1 0 1 1 141 148 1 0 1 INTRA cancer_singleSample GBM_6_T 0 484 483 918 434 925 1 8 9 13 0,421053 extreme_oneoff GBM_6_T;chainID=1 1 22574084 22574287 1 52411966 52412198 4086113 7 - - 1 0 1 1 147 150 1 0 1 INTRA cancer_singleSample GBM_6_T 44 567 565 827 260 867 2 5 3 5 0,555556 extreme_oneoff GBM_6_T;chainID=1 1 22577194 22577380 1 26358343 26358648 4086310 13 - + 1 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22582330 22582523 1 25370066 25370433 4086501 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T 5 320 320 468 148 483 0 5 6 3 0,526316 extreme_oneoff GBM_6_T;chainID=1 1 22620339 22620569 1 25344531 25344885 4088049 7 + - 2 2 1 1 142 150 1 0 1 INTRA cancer_singleSample GBM_6_T 19 585 585 857 272 863 0 2 3 6 0,307692 extreme_oneoff GBM_6_T;chainID=1 1 22648195 22648422 1 26608899 26609115 4089439 8 + - 0 2 1 1 150 133 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22711367 22711672 1 24734535 24734843 4092607 16 + + 1 0 1 1 149 150 1 0 1 INTRA cancer_singleSample GBM_6_T 293 472 39 293 179 494 0 6 10 12 0,352941 extreme_oneoff GBM_6_T;chainID=1 1 22718245 22718475 1 51765728 51766018 4092812 9 - + 3 4 1 1 149 134 1 0 1 INTRA cancer_singleSample GBM_6_T 0 580 578 911 331 911 2 4 4 2 0,571429 extreme_oneoff GBM_6_T;chainID=1 1 22739905 22740251 1 23137038 23137374 4094645 9 + + 1 1 1 1 145 115 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22814367 22814474 1 23308593 23308703 4099162 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 22818697 22819009 1 24007975 24008300 4099337 16 + + 0 2 1 1 150 100 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22884645 22884855 1 25461263 25461502 4102388 10 - + 0 3 1 1 143 132 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22884860 22885000 1 25461511 25461624 4102397 8 - - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 22900546 22900794 1 25357360 25357485 4103105 6 + + 1 3 1 1 107 134 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23067796 23067978 1 23103508 23103856 4112358 7 + + 1 1 1 1 148 150 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23068179 23068508 1 23794761 23795102 4112411 21 + + 1 0 1 1 148 150 1 0 1 INV cancer_singleSample GBM_6_T 211 247 0 213 34 249 2 NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23072988 23073330 1 23075935 23076271 4112823 17 + - 0 2 1 1 150 146 1 0 1 DEL cancer_singleSample GBM_6_T 573 726 0 574 152 726 1 0 8 13 0 extreme_oneoff GBM_6_T;chainID=1 1 23137054 23137384 1 26548912 26549270 4116258 10 - - 1 1 1 1 127 128 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23209386 23209625 1 52246333 52246581 4120484 10 - + 3 2 1 1 150 129 1 0 1 INTRA cancer_singleSample GBM_6_T 434 945 7 434 427 963 0 7 10 12 0,388889 extreme_oneoff GBM_6_T;chainID=1 1 23260096 23260444 1 23427830 23428218 4123873 25 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_6_T 6 217 219 511 212 1035 -2 0 7 10 0 extreme_oneoff GBM_6_T;chainID=1 1 23290351 23290523 1 23308574 23308735 4125750 6 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_6_T 336 739 0 336 336 776 0 7 6 11 0,451613 extreme_oneoff GBM_6_T;chainID=1 1 23291741 23292066 1 23805921 23806262 4125851 18 - + 2 0 1 1 145 144 1 0 1 DUP cancer_singleSample GBM_6_T 594 815 0 595 220 816 1 0 6 7 0 extreme_oneoff GBM_6_T;chainID=1 1 23380386 23380697 1 23409547 23409878 4132255 25 + + 0 0 1 1 149 149 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23409103 23409411 1 24719218 24719564 4135197 15 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23409341 23409454 1 24379500 24379622 4135249 4 - - 1 3 1 1 150 132 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23409423 23409553 1 23919677 23919806 4135285 4 + - 3 0 1 1 146 150 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23409429 23409525 1 23416869 23416997 4135279 4 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23409478 23409635 1 23822124 23822294 4135286 6 + - 2 0 1 1 139 150 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23409544 23409832 1 25843485 25843790 4135292 10 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23409561 23409882 1 24573508 24573816 4135328 18 + - 1 1 1 1 141 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23409587 23409769 1 24578484 24578690 4135315 10 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23472703 23472841 1 23884628 23884776 4139299 3 - - 0 2 1 1 150 150 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23473863 23474240 1 23913838 23914197 4139324 25 + - 0 0 1 1 142 150 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23512431 23512657 1 23822037 23822279 4141112 19 + + 1 1 1 1 146 139 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23512517 23512643 1 25843470 25843706 4141110 6 - + 1 0 1 1 148 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23537867 23538116 1 51412755 51413019 4142214 16 + + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T 71 187 0 73 71 232 2 11 9 5 0,611111 extreme_oneoff GBM_6_T;chainID=1 1 23540367 23540750 1 26104188 26104537 4142350 19 - - 1 1 1 1 150 149 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23571940 23572182 1 23800598 23800825 4143870 12 + - 2 1 1 1 137 99 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23586579 23586946 1 51990117 51990525 4144669 13 - - 0 1 1 1 150 139 1 0 1 INTRA cancer_singleSample GBM_6_T 288 790 1 290 287 834 2 10 8 11 0,512821 extreme_oneoff GBM_6_T;chainID=1 1 23591772 23592048 12 61971904 61972166 18208778 9 - - 2 0 1 1 136 150 1 0 1 INTER cancer_singleSample OV_1_T 350 753 24 353 326 797 3 3 29 23 0,103448 simple NA 1 23597421 23597648 1 26417898 26418131 4145568 5 - - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23598604 23598854 1 24878784 24879085 4145664 7 + - 2 2 1 1 71 139 1 0 1 INTRA cancer_singleSample GBM_6_T 560 675 17 522 116 675 -38 0 20 5 0 extreme_oneoff GBM_6_T;chainID=1 1 23599035 23599365 1 24902335 24902677 4145716 19 + + 0 2 1 1 139 140 1 0 1 INTRA cancer_singleSample GBM_6_T 0 600 599 744 144 758 1 3 14 1 0,285714 extreme_oneoff GBM_6_T;chainID=1 1 23711156 23711516 1 51392137 51392496 4151864 16 - - 2 1 1 1 133 142 1 0 1 INTRA cancer_singleSample GBM_6_T 585 723 0 585 138 745 0 1 4 3 0,222222 extreme_oneoff GBM_6_T;chainID=1 1 23726910 23727288 1 52275990 52276322 4152632 35 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23727817 23728135 1 26939992 26940530 4152669 12 - + 3 1 1 1 131 134 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23732151 23732456 1 26870436 26870741 4152928 12 + + 3 2 1 1 147 147 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23738912 23739183 12 61971572 61971862 18208811 10 + + 1 2 1 1 106 148 1 0 1 INTER cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 23800641 23800952 1 24943527 24943830 4157725 10 + + 0 0 1 1 133 150 1 0 1 INTRA cancer_singleSample GBM_6_T 0 627 626 699 72 700 1 NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23822113 23822314 1 25843482 25843757 4159402 12 + + 1 0 1 1 123 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 23936010 23936278 1 24409053 24409412 4168569 10 + - 3 2 1 1 143 148 1 0 1 DEL cancer_singleSample GBM_6_T 0 579 579 850 271 854 0 3 8 7 0,285714 extreme_oneoff GBM_6_T;chainID=1 1 23982802 23983129 1 25201958 25202255 4172316 19 + + 1 2 1 1 140 143 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 24000779 24001120 1 24495854 24496200 4173932 22 - - 1 1 1 1 149 149 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 24225387 24225532 1 24495613 24495777 4189208 6 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_6_T 445 568 0 445 123 581 0 4 3 4 0,533333 extreme_oneoff GBM_6_T;chainID=1 1 24240035 24240296 1 24508363 24508645 4190255 13 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 24403830 24404089 1 25156460 25156734 4199714 9 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 24449227 24449578 1 24803941 24804252 4201742 15 + - 1 1 1 1 150 148 1 0 1 DEL cancer_singleSample GBM_6_T 581 888 0 582 306 888 1 3 6 8 0,3 extreme_oneoff GBM_6_T;chainID=1 1 24459620 24459743 1 24465709 24465850 4202450 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 24479053 24479142 1 24809277 24809386 4203690 5 - + 2 2 1 1 150 145 1 0 1 DUP cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 24575567 24575944 1 26418942 26419323 4208318 19 + + 0 1 1 1 150 145 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 24578097 24578319 1 51756725 51756884 4208398 8 - + 1 0 1 1 145 150 1 0 1 INTRA cancer_singleSample GBM_6_T 0 392 388 968 388 968 4 3 11 9 0,230769 extreme_oneoff GBM_6_T;chainID=1 1 24628036 24628342 1 26944739 26945081 4211201 12 - - 0 0 1 1 150 120 1 0 1 INTRA cancer_singleSample GBM_6_T 366 644 137 369 229 649 3 9 10 4 0,5625 extreme_oneoff GBM_6_T;chainID=1 1 24809744 24810121 1 25889227 25889620 4220650 22 - + 1 1 1 1 148 145 1 0 1 INTRA cancer_singleSample GBM_6_T 0 583 587 672 86 694 -4 0 12 0 0 extreme_oneoff GBM_6_T;chainID=1 1 24825388 24825717 1 24996810 24997149 4221900 23 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 24864673 24864989 1 52410307 52410618 4228007 23 + + 0 0 1 1 129 150 1 0 1 INTRA cancer_singleSample GBM_6_T 585 812 0 588 224 820 3 0 2 8 0 extreme_oneoff GBM_6_T;chainID=1 1 24938707 24939066 1 26779803 26780152 4231180 13 - + 4 1 1 1 74 150 1 0 1 INTRA cancer_singleSample GBM_6_T 566 747 0 568 179 747 2 4 10 6 0,333333 extreme_oneoff GBM_6_T;chainID=1 1 24984792 24985101 1 26611081 26611450 4231452 18 - + 1 0 1 1 74 149 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 24995679 24996085 1 26504745 26505133 4231501 10 + + 4 2 1 1 43 134 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 25073349 25073674 1 25879299 25879604 4231829 17 - - 3 2 1 1 137 140 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 25190746 25191105 1 26059767 26060116 4232428 22 - - 3 3 1 1 141 131 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 25218270 25218560 1 25473335 25473618 4232508 12 + + 3 2 1 1 112 103 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 25342625 25342960 1 25373257 25373592 4232731 9 + - 1 1 1 1 114 149 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 25411537 25411848 1 26059849 26060140 4232880 8 - + 2 1 1 1 138 150 1 0 1 DUP cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 25433958 25434314 1 25478540 25478887 4232952 21 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 25450207 25450470 1 25942927 25943082 4233047 5 - - 3 8 1 1 150 109 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 25553118 25553503 1 26326659 26327055 4233565 29 + - 3 2 1 1 140 123 1 0 1 DEL cancer_singleSample GBM_6_T 37 282 281 499 217 590 1 0 3 2 0 extreme_oneoff GBM_6_T;chainID=1 1 25612547 25612683 1 25733991 25734102 4233819 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 25642898 25642986 1 25843688 25843798 4234079 4 + + 1 4 1 1 80 141 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 25811458 25811801 1 51986374 51986743 4234859 26 + + 2 1 1 1 141 150 1 0 1 INTRA cancer_singleSample GBM_6_T 154 579 3 157 151 623 3 11 10 12 0,5 extreme_oneoff GBM_6_T;chainID=1 1 25843492 25843742 1 52424396 52424672 4247216 12 - + 1 0 1 1 147 148 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 25981781 25982158 1 26035841 26036222 4300236 26 - - 1 0 1 1 149 146 1 0 1 INV cancer_singleSample GBM_6_T 0 583 576 653 70 656 7 NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 25985781 25985927 1 33051957 33052215 4300602 4 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 1 25987723 25988044 1 26010943 26011291 4300976 9 - - 1 2 1 1 150 133 1 0 1 INV cancer_singleSample GBM_6_T 580 672 0 584 88 687 4 1 8 1 0,181818 extreme_oneoff GBM_6_T;chainID=1 1 26021817 26022016 1 26360528 26360869 4307313 12 + - 2 0 1 1 148 150 1 0 1 DEL cancer_singleSample GBM_6_T 0 585 578 762 177 772 7 9 3 4 0,72 extreme_oneoff GBM_6_T;chainID=1 1 26046453 26046665 1 26058242 26058418 4311326 10 + - 0 1 1 1 130 150 1 0 1 DEL cancer_singleSample GBM_6_T 0 519 519 703 184 729 0 1 6 6 0,142857 extreme_oneoff GBM_6_T;chainID=1 1 26052244 26052473 1 52249071 52249342 4311916 12 + - 3 3 1 1 139 133 1 0 1 INTRA cancer_singleSample GBM_6_T 534 640 0 535 105 684 1 4 6 8 0,363636 extreme_oneoff GBM_6_T;chainID=1 1 26082879 26083129 1 26336153 26336433 4316024 10 + - 0 2 1 1 150 85 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 26155862 26156231 1 26358057 26358425 4324467 27 + - 1 0 1 1 147 150 1 0 1 DEL cancer_singleSample GBM_6_T 598 727 0 599 128 843 1 8 6 2 0,666667 extreme_oneoff GBM_6_T;chainID=1 1 26166451 26166832 1 26648421 26648791 4326082 13 + - 0 0 1 1 150 146 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 26200742 26201128 1 26345394 26345790 4329946 17 + - 0 1 1 1 130 129 1 0 1 DEL cancer_singleSample GBM_6_T 387 842 57 390 330 854 3 2 6 5 0,266667 extreme_oneoff GBM_6_T;chainID=1 1 26213943 26214257 1 26695674 26695999 4331006 16 - + 0 0 1 1 149 119 1 0 1 DUP cancer_singleSample GBM_6_T 283 677 17 283 266 695 0 9 11 28 0,315789 extreme_oneoff GBM_6_T;chainID=1 1 26256174 26256295 1 26344120 26344341 4333695 5 + + 1 2 1 1 150 142 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 26256573 26256929 1 26405339 26405700 4333745 24 - - 1 1 1 1 146 144 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 26269228 26269577 1 26334311 26334677 4334116 20 - + 0 1 1 1 140 148 1 0 1 DUP cancer_singleSample GBM_6_T 44 228 227 390 162 545 1 5 15 9 0,294118 extreme_oneoff GBM_6_T;chainID=1 1 26272866 26273048 1 26477827 26478149 4334393 7 + + 0 1 1 1 57 150 1 0 1 INV cancer_singleSample GBM_6_T 237 371 3 245 126 379 8 4 4 11 0,347826 extreme_oneoff GBM_6_T;chainID=1 1 26365905 26366242 1 26640569 26640908 4335948 16 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_6_T 0 315 314 908 314 908 1 5 3 12 0,4 extreme_oneoff GBM_6_T;chainID=1 1 26366742 26367084 1 26659108 26659427 4335949 20 - + 1 1 1 1 54 86 1 0 1 DUP cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 26394864 26395172 1 26613952 26614323 4336047 13 + - 2 0 1 1 101 147 1 0 1 DEL cancer_singleSample GBM_6_T 5 145 141 723 136 723 4 7 5 11 0,466667 extreme_oneoff GBM_6_T;chainID=1 1 26446416 26446657 1 27234142 27234436 4336239 7 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_2_T 250 540 11 255 239 566 5 8 24 14 0,296296 simple NA 1 26450628 26450969 1 26661536 26661917 4336258 16 - - 0 0 1 1 150 78 1 0 1 INV cancer_singleSample GBM_6_T 336 527 13 338 189 527 2 7 7 7 0,5 extreme_oneoff GBM_6_T;chainID=1 1 26479101 26479331 2 190993088 190993298 5031746 9 + + 0 2 1 1 150 150 1 0 1 INTER cancer_singleSample OV_5_T 1 607 605 784 177 787 2 16 1 16 0,653061 simple NA 1 26480709 26481023 1 26617760 26618059 4336392 20 - - 0 1 1 1 150 147 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 26560488 26560808 1 52232195 52232524 4336632 7 + + 3 0 1 1 148 150 1 0 1 INTRA cancer_singleSample GBM_6_T 0 289 288 900 288 900 1 0 3 10 0 extreme_oneoff GBM_6_T;chainID=1 1 26696096 26696197 4 134099453 134099534 5153963 3 + + 0 0 1 1 124 33 1 0 1 INTER cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 26752023 26752378 1 52245898 52246205 4337207 27 + - 1 0 1 1 146 134 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 26815830 26816112 1 26832146 26832496 4337507 21 + - 1 1 1 1 146 134 1 0 1 DEL cancer_singleSample GBM_6_T 29 335 333 680 304 680 2 5 7 6 0,434783 extreme_oneoff GBM_6_T;chainID=1 1 26873345 26873697 1 26983163 26983509 4337791 14 - - 2 2 1 1 143 144 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 26891544 26891767 1 26893984 26894160 4337898 3 + - 0 0 1 1 150 118 1 0 1 DEL cancer_singleSample LUSC_2_T 172 443 8 174 164 506 2 1 18 11 0,0645161 simple NA 1 26924631 26925021 1 52048474 52048851 4338108 28 + - 1 1 1 1 142 135 1 0 1 INTRA cancer_singleSample GBM_6_T 11 347 344 608 261 623 3 0 8 5 0 extreme_oneoff GBM_6_T;chainID=1 1 26926028 26926399 1 27029723 27030065 4338127 40 - - 0 0 1 1 147 147 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 26981588 26981939 1 51980264 51980628 4338394 24 + - 0 0 1 1 149 150 1 0 1 INTRA cancer_singleSample GBM_6_T 0 591 588 1118 527 1118 3 8 12 10 0,421053 extreme_oneoff GBM_6_T;chainID=1 1 27006156 27006523 1 52190873 52191189 4338529 10 + + 0 1 1 1 150 147 1 0 1 INTRA cancer_singleSample GBM_6_T 0 85 85 669 85 669 0 10 10 15 0,444444 extreme_oneoff GBM_6_T;chainID=1 1 27008289 27008616 1 52193454 52193792 4338569 37 - - 1 0 1 1 135 150 1 0 1 INTRA cancer_singleSample GBM_6_T 0 228 226 265 37 345 2 3 7 10 0,26087 extreme_oneoff GBM_6_T;chainID=1 1 27035373 27035712 1 51509156 51509516 4338631 19 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 27041222 27041344 1 27392189 27392304 4338664 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_11_T 0 231 234 605 232 606 -3 9 19 14 0,352941 simple NA 1 27064526 27064893 1 90450616 90450986 4338787 16 + - 1 0 1 1 141 126 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 27079259 27079610 1 51156552 51156930 4338870 27 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 27085781 27086073 1 90401563 90401885 4338925 25 - - 2 1 1 1 138 147 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 27285838 27286040 1 27302751 27302965 4339514 10 + - 0 1 1 1 150 113 1 0 1 DEL cancer_singleSample OV_6_T 0 129 127 433 127 482 2 6 5 25 0,285714 simple NA 1 27398372 27398634 1 27409684 27409875 4340033 4 - - 0 0 1 1 73 150 1 0 1 INV cancer_singleSample BRCA_11_T 37 240 222 498 185 570 18 0 15 11 0 simple NA 1 27515372 27515480 1 27515878 27515976 4340460 4 + - 0 0 1 1 125 94 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 27549514 27549775 8 87192241 87192480 5672862 10 - - 0 0 1 1 140 150 1 0 1 INTER cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 27639454 27639680 1 27790768 27790990 4340958 5 - + 1 0 1 1 111 150 1 0 1 DUP cancer_singleSample OV_1_T 31 539 542 921 380 933 -3 6 21 20 0,226415 simple NA 1 27952714 27952988 1 27963541 27963743 4341823 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 0 609 608 852 243 861 1 19 19 9 0,575758 simple NA 1 28680015 28680206 1 28696047 28696339 4345360 10 - + 0 1 1 1 143 129 1 0 1 DUP cancer_singleSample OV_3_T 459 783 20 460 323 820 1 0 14 5 0 simple NA 1 28680075 28680205 1 28760514 28760707 4345355 14 + - 0 0 1 1 150 136 1 0 1 DEL cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 29170571 29170685 1 35969711 35969815 4347766 4 - + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T 378 648 6 381 267 648 3 10 14 3 0,540541 extreme_oneoff GBM_13_T;chainID=1 1 29361209 29361380 1 67702067 67702226 4348723 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 662 1280 0 664 616 1280 2 8 25 22 0,253968 simple NA 1 29370139 29370334 1 29372147 29372382 4348781 9 + - 0 0 1 1 150 149 1 0 1 DEL cancer_singleSample OV_6_T 0 225 226 430 205 485 -1 7 8 3 0,56 simple NA 1 29510328 29510534 1 29510835 29511063 4349401 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_11_T 0 309 178 594 178 597 131 8 6 4 0,615385 simple NA 1 29535725 29535945 1 36867509 36867730 4349510 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T 0 607 606 1146 539 1448 1 8 7 2 0,64 extreme_oneoff GBM_13_T;chainID=1 1 29738302 29738412 1 29745938 29746080 4350181 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 123 123 684 123 684 0 9 7 18 0,418605 simple NA 1 30998201 30998473 21 35117505 35117786 18563761 14 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T 0 608 608 732 124 747 0 10 15 24 0,338983 simple NA 1 31049378 31049498 9 96923902 96924045 5839453 3 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 0 626 625 833 207 888 1 5 13 18 0,243902 simple NA 1 31195314 31195486 1 31409176 31409467 4355391 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_3_T 0 581 581 761 180 804 0 0 13 14 0 simple NA 1 31222155 31222371 1 157796930 157797064 4355429 7 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_6_T 591 693 0 592 101 697 1 7 13 1 0,5 simple NA 1 31379646 31379942 11 77224130 77224415 18196881 17 - + 1 2 1 1 150 143 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 31560838 31561027 1 37127840 37128140 4356789 7 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_3_T 79 510 17 74 58 510 -5 18 26 2 0,5625 mild_oneoff BRCA_3_T;chainID=1 1 31561274 31561397 1 37128548 37128793 4356799 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff BRCA_3_T;chainID=1 1 31593778 31594306 1 31603519 31604313 4357074 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff BRCA_3_T;chainID=1 1 31804836 31804997 1 36742016 36742126 4358151 5 + + 2 0 1 1 150 112 1 0 1 INTRA cancer_singleSample GBM_13_T 350 726 33 351 317 741 1 4 12 7 0,296296 extreme_oneoff GBM_13_T;chainID=1 1 31808516 31808702 1 35920291 35920469 4358172 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T 0 623 623 1233 610 1233 0 8 13 7 0,444444 extreme_oneoff GBM_13_T;chainID=1 1 31809032 31809198 1 38095073 38095321 4358177 4 - + 0 0 1 1 127 135 1 0 1 INTRA cancer_singleSample LUAD_3_T 448 887 23 450 425 889 2 2 5 6 0,266667 simple NA 1 31867117 31867365 1 36741388 36741637 4358462 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T 8 516 516 1125 508 1125 0 6 9 6 0,444444 extreme_oneoff GBM_13_T;chainID=1 1 32488824 32489055 1 32497062 32497304 4361047 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 4 337 336 701 332 711 1 7 25 20 0,237288 simple NA 1 32573257 32573510 4 41410933 41411177 5154930 9 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T 223 828 0 223 223 828 0 7 14 19 0,297872 simple NA 1 32594244 32594389 1 32791673 32791821 4361669 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 76 686 16 80 60 686 4 7 14 17 0,311111 simple NA 1 32904993 32905227 1 32970048 32970296 4363012 19 - + 0 0 1 1 150 140 1 0 1 DUP cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 32945764 32946056 1 32982146 32982436 4363162 22 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 32961255 32961541 1 41320315 41320613 4363242 50 - - 1 2 1 1 149 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 1 32966786 32967037 1 40920614 40920865 4363251 19 + - 1 1 1 1 148 149 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 1 33144204 33144404 1 42129266 42129402 4364321 4 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 1 33144321 33144437 1 42128954 42129234 4364324 6 + + 1 2 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 1 33394771 33394912 12 45778423 45778626 18210320 4 - - 3 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 34847425 34847654 4 153552698 153552900 5155269 7 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_8_T 0 600 598 716 116 724 2 5 7 3 0,5 simple NA 1 34847686 34847901 4 153553840 153554059 5155270 7 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_8_T 212 386 9 216 170 469 4 11 6 31 0,372881 simple NA 1 35089053 35089248 1 35350516 35350777 4375512 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 0 484 480 1073 480 1087 4 4 36 18 0,129032 simple NA 1 35156476 35156639 1 35158268 35158455 4375962 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 677 798 28 680 118 819 3 2 14 13 0,129032 simple NA 1 35862017 35862196 19 47354951 47355118 18522130 7 - - 0 0 1 1 150 125 1 0 1 INTER cancer_singleSample OV_10_T 285 887 42 286 243 887 1 8 1 5 0,727273 simple NA 1 35868791 35869032 19 47354603 47354833 18522131 7 + + 0 0 1 1 132 112 1 0 1 INTER cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 36035228 36035450 8 112040410 112040649 5673940 14 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 0 776 782 1232 451 1258 -6 20 7 17 0,625 simple NA 1 36511520 36511738 1 36799688 36799947 4383721 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 459 806 5 461 345 832 2 9 32 23 0,246575 simple NA 1 36661653 36661892 22 44085405 44085659 18565146 10 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 36714808 36714948 1 36717627 36717777 4384452 3 + - 0 3 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_6_T 314 635 7 314 307 643 0 1 7 16 0,08 simple NA 1 36761457 36761741 1 56476555 56476849 4384708 17 - + 1 0 1 1 150 149 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 36799019 36799338 1 36802044 36802305 4384861 10 - + 0 0 1 1 150 114 1 0 1 DUP cancer_singleSample LUAD_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 36806698 36806929 1 204525792 204526069 4384879 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T 31 428 427 668 240 671 1 3 11 24 0,146341 simple NA 1 36897838 36898398 3 181422768 181423090 5117774 67 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 37045608 37045825 22 50441848 50442065 18565157 7 + + 0 0 1 1 150 108 1 0 1 INTER cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 37159315 37159542 1 40163142 40163340 4386582 10 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_7_T;chainID=1 1 37161075 37161337 1 39338120 39338410 4386588 9 - + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_7_T;chainID=1 1 37162391 37162721 1 38767008 38767310 4386600 12 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_7_T;chainID=1 1 37263695 37263822 1 37269905 37270075 4387082 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 37845552 37845810 1 37919817 37920095 4391258 9 - + 2 0 1 1 74 150 1 0 1 DUP cancer_singleSample OV_5_T 7 602 599 830 228 830 3 9 25 14 0,315789 simple NA 1 37879170 37879650 3 182981734 182982056 5117986 41 - - 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_7_T;chainID=1 1 37891842 37892139 8 70619235 70619513 5674101 26 + - 2 1 1 1 148 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 38049849 38050031 1 39601572 39601756 4392361 6 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T 590 830 31 590 240 874 0 12 20 25 0,347826 simple NA 1 38214823 38215070 1 38215510 38215732 4393121 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 38239054 38239252 1 38449471 38449704 4393156 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 0 630 630 1258 628 1258 0 5 21 18 0,204082 simple NA 1 38489014 38489204 1 38544025 38544227 4394442 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 38738051 38738319 3 182011387 182011642 5118160 12 - + 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_7_T;chainID=1 1 38766061 38766345 3 182016824 182017327 5118162 14 + + 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_7_T;chainID=1 1 38766374 38766641 3 182003151 182003383 5118163 14 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_7_T;chainID=1 1 38783463 38783586 1 38784664 38784799 4395992 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 38833386 38833573 1 144479468 144479651 4396438 7 + + 0 0 1 1 150 41 1 0 1 INTRA cancer_singleSample BRCA_3_T 293 342 342 733 49 737 0 14 20 37 0,329412 simple NA 1 39027654 39027908 3 182152687 182152930 5118204 9 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 39215858 39216031 1 42337860 42338085 4398771 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_6_T 28 452 450 706 254 735 2 2 31 23 0,0689655 simple NA 1 39301969 39302219 1 39353661 39353943 4399115 20 - - 0 0 1 1 139 150 1 0 1 INV cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_7_T;chainID=1 1 39319325 39319532 1 40167486 40167634 4399165 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_7_T;chainID=1 1 39329357 39329601 1 40168193 40168525 4399178 12 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_7_T;chainID=1 1 39729683 39729901 1 42789107 42789329 4401277 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T 0 668 664 719 51 788 4 2 29 34 0,0597015 simple NA 1 39755752 39756046 1 63399557 63399872 4401378 108 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T 216 800 0 218 216 800 2 46 29 23 0,638889 mild_stepwise LUSC_3_T;chainID=1 1 39775550 39775798 1 40991214 40991457 4401501 76 - + 0 0 1 1 150 144 1 0 1 INTRA cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_3_T;chainID=1 1 39792745 39792856 1 40977374 40977474 4401666 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_3_T;chainID=1 1 39867543 39867813 1 43036526 43036808 4402233 19 + + 1 2 1 1 142 148 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 39927575 39927855 3 182663144 182663422 5118419 64 - + 0 0 1 1 150 148 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 40105709 40105967 5 138170781 138171034 5193734 15 - + 0 0 1 1 150 131 1 0 1 INTER cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 40224251 40224483 1 42180604 42180838 4403797 7 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T 0 612 607 697 85 706 5 NA NA NA NA simple NA 1 40252998 40253241 1 201734544 201734803 4403820 10 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 40255966 40256233 5 153421211 153421450 5193753 17 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 40286519 40286789 1 40351128 40351410 4403921 13 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 40370570 40370797 3 171651366 171651620 5118493 11 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 40541061 40541262 1 40895516 40895775 4405179 13 - + 1 1 1 1 150 129 1 0 1 DUP cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 40563555 40563799 3 163306781 163307066 5118530 11 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 40727418 40727587 1 40730895 40731074 4406373 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 41000606 41000811 8 68548151 68548385 5674475 15 + + 2 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 1 41358472 41358722 1 41360923 41361177 4409215 10 - + 0 0 1 1 127 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 41373698 41373983 1 41497237 41497514 4409373 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 41722824 41723139 1 44571597 44571890 4411983 17 - - 1 3 1 1 150 149 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 1 41824298 41824427 11 78132615 78132762 18198351 3 + - 1 2 1 1 150 111 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 41938074 41938344 11 77822029 77822304 18198365 8 + - 2 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 42075782 42075997 1 44583181 44583325 4413413 4 - + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 1 42128711 42128865 8 68036287 68036485 5674604 4 + - 0 2 1 1 150 87 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 1 42287933 42288244 8 87830218 87830367 5674608 3 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 609 1224 1 616 608 1224 7 5 22 19 0,196078 simple NA 1 42339585 42339845 1 46317250 46317482 4414722 5 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_6_T 279 497 30 289 208 497 10 2 24 25 0,0754717 simple NA 1 42794754 42795008 1 43313688 43313933 4418560 8 - + 0 2 1 1 150 147 1 0 1 DUP cancer_singleSample OV_6_T 0 584 582 752 168 800 2 6 9 18 0,307692 simple NA 1 43034142 43034617 1 43043543 43044550 4420210 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 43143667 43143880 1 48434140 48434324 4421054 5 + + 1 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T 599 864 0 601 263 872 2 8 17 15 0,333333 simple NA 1 43145720 43146000 1 43151035 43151316 4421059 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 43151182 43151438 1 43154957 43155238 4421068 15 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 43179644 43179885 3 176417288 176417525 5119381 13 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_9_T 0 607 606 845 238 845 1 3 10 27 0,139535 simple NA 1 43341485 43341675 1 43345023 43345219 4422030 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 19 455 452 791 336 791 3 5 7 7 0,416667 simple NA 1 43385133 43385242 1 43386676 43386819 4422278 6 + - 0 1 1 1 129 150 1 0 1 DEL cancer_singleSample GBM_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 43500851 43501074 1 43526944 43527145 4422775 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 43654454 43654683 1 55691614 55691885 4423558 8 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T 343 953 2 344 341 953 1 9 32 0 0,36 simple NA 1 43929597 43929749 1 246353098 246353221 4424983 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_12_T 665 1009 0 665 344 1042 0 10 19 22 0,327869 simple NA 1 43943585 43943745 1 246353071 246353202 4425066 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_12_T 262 418 50 259 157 418 -3 9 18 18 0,333333 simple NA 1 43959095 43959255 1 44031401 44031540 4425141 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 44038256 44038439 1 44061848 44062042 4425347 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 524 855 10 524 331 1183 0 7 28 22 0,21875 simple NA 1 44083061 44083283 1 44117353 44117571 4425418 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 0 604 603 938 334 969 1 4 18 23 0,163265 simple NA 1 44747375 44747563 8 105965530 105965701 5674971 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 45507738 45507879 1 46015759 46015865 4432943 3 - - 0 0 1 1 150 111 1 0 1 INV cancer_singleSample OV_1_T 30 348 352 489 138 530 -4 2 14 18 0,111111 simple NA 1 45566619 45566844 6 87238326 87238396 5224614 3 + + 0 2 1 1 33 34 1 0 1 INTER cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 45979293 45979472 1 46077021 46077301 4436002 3 + - 1 2 1 1 112 150 1 0 1 DEL cancer_singleSample OV_11_T 0 616 615 750 134 772 1 6 25 8 0,266667 extreme_stepwise OV_11_T;chainID=1 1 45996600 45996807 1 46078268 46078531 4436068 7 - + 2 3 1 1 150 150 1 0 1 DUP cancer_singleSample OV_11_T 359 577 39 361 216 577 2 9 24 7 0,367347 extreme_stepwise OV_11_T;chainID=1 1 46048747 46048970 1 47743698 47743893 4436438 7 + + 3 0 1 1 118 150 1 0 1 INTRA cancer_singleSample OV_11_T 0 612 609 1207 595 1216 3 14 12 6 0,608696 extreme_stepwise OV_11_T;chainID=1 1 46399885 46400098 1 47168409 47168697 4438439 5 - + 4 2 1 1 150 150 1 0 1 DUP cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 46495646 46495783 1 47239833 47239981 4439237 3 - - 1 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_11_T 284 807 28 287 256 807 3 6 13 121 0,0821918 simple NA 1 46822460 46822692 8 68116899 68117112 5675259 12 + - 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 1 46837949 46838230 3 195761496 195761803 5120042 65 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_3_T;chainID=2 1 46837959 46838234 3 195762970 195763257 5120087 66 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_3_T;chainID=2 1 48166995 48167182 1 48188579 48188740 4449289 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 13 207 204 597 191 629 3 7 5 3 0,636364 simple NA 1 49387753 49387903 1 49390200 49390322 4458443 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 79 273 272 899 193 899 1 6 11 16 0,307692 simple NA 1 49505942 49506066 1 49514192 49514372 4459683 4 - + 0 2 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_7_T 627 1311 2 629 625 1311 2 2 29 25 0,0689655 simple NA 1 50207271 50207768 1 50216484 50217302 4467331 3 - - 0 0 1 1 67 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 50394680 50394857 1 50443999 50444168 4469038 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 50716600 50716811 1 50989308 50989540 4471648 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 0 620 614 1091 471 1123 6 9 23 23 0,28125 simple NA 1 50913768 50913920 1 50916926 50917096 4472920 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 51126401 51126663 1 51451683 51451936 4474791 14 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_6_T 572 1056 0 570 485 1083 -2 4 11 4 0,347826 extreme_oneoff GBM_6_T;chainID=1 1 51155839 51156134 6 123933147 123933475 5225771 5 + + 4 3 1 1 107 101 1 0 1 INTER cancer_singleSample GBM_6_T 116 630 0 116 116 665 0 1 3 53 0,0344828 extreme_oneoff GBM_6_T;chainID=1 1 51194674 51194870 1 51539886 51540141 4475235 4 + - 2 1 1 1 137 150 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 51231059 51231220 1 149206021 149206245 4475575 5 + + 0 1 1 1 150 125 1 0 1 INTRA cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 51244750 51245108 1 52209065 52209404 4475663 24 - - 0 0 1 1 150 149 1 0 1 INV cancer_singleSample GBM_6_T 0 585 584 1172 584 1172 1 10 4 14 0,526316 extreme_oneoff GBM_6_T;chainID=1 1 51287867 51288225 1 51571928 51572293 4476011 25 - - 0 0 1 1 150 149 1 0 1 INV cancer_singleSample GBM_6_T 0 590 589 938 348 976 1 11 11 12 0,488889 extreme_oneoff GBM_6_T;chainID=1 1 51312246 51312604 1 51843611 51843989 4476111 20 - - 1 1 1 1 149 83 1 0 1 INV cancer_singleSample GBM_6_T 16 124 124 698 108 709 0 4 3 7 0,444444 extreme_oneoff GBM_6_T;chainID=1 1 51314114 51314484 1 51777655 51778048 4476117 24 + + 0 2 1 1 150 139 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 51498901 51499113 1 52207345 52207595 4477636 12 - + 1 1 1 1 108 149 1 0 1 DUP cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 51595392 51595771 1 52326356 52326775 4478296 25 + + 0 1 1 1 147 132 1 0 1 INV cancer_singleSample GBM_6_T 579 703 0 585 118 730 6 9 13 9 0,45 extreme_oneoff GBM_6_T;chainID=1 1 51781800 51782157 1 51837401 51837726 4479883 26 - + 1 0 1 1 149 150 1 0 1 DUP cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 51785546 51785741 1 51800352 51800558 4479910 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 51825966 51826326 1 51848243 51848575 4480032 26 - + 0 0 1 1 150 122 1 0 1 DUP cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 51891796 51892135 1 51900259 51900563 4480684 24 + - 0 0 1 1 150 145 1 0 1 DEL cancer_singleSample GBM_6_T 0 629 628 885 256 903 1 4 12 5 0,32 extreme_oneoff GBM_6_T;chainID=1 1 51925992 51926090 1 51926451 51926548 4480941 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 9 231 231 827 222 1059 0 8 0 4 0,8 simple NA 1 51929627 51929774 15 98722023 98722148 18357136 5 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T 191 630 18 195 173 630 4 12 31 11 0,363636 simple NA 1 51944716 51945080 1 51977525 51977875 4481167 22 - + 0 0 1 1 54 150 1 0 1 DUP cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 51950959 51951148 15 98721978 98722131 18357138 4 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T 9 509 506 683 174 750 3 5 24 21 0,181818 simple NA 1 51992459 51992824 1 52009335 52009718 4481422 21 + + 0 0 1 1 106 150 1 0 1 INV cancer_singleSample GBM_6_T 14 310 310 744 296 746 0 5 13 8 0,322581 extreme_oneoff GBM_6_T;chainID=1 1 51995937 51996282 1 52011322 52011692 4481456 25 - - 2 1 1 1 139 146 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 52044507 52044901 1 52162910 52163272 4481956 26 + - 0 0 1 1 148 147 1 0 1 DEL cancer_singleSample GBM_6_T 273 504 45 279 225 509 6 8 4 12 0,5 extreme_oneoff GBM_6_T;chainID=1 1 52082719 52083065 1 52151277 52151641 4482191 13 + - 2 2 1 1 150 132 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 52161695 52162064 1 90476184 90476606 4482921 30 + - 0 0 1 1 150 148 1 0 1 INTRA cancer_singleSample GBM_6_T 577 846 0 577 269 854 0 7 13 3 0,466667 extreme_oneoff GBM_6_T;chainID=1 1 52171286 52171439 1 60280792 60280959 4483036 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_6_T 256 644 0 258 256 663 2 3 16 2 0,25 mild_oneoff LUAD_6_T;chainID=1 1 52266530 52266649 1 52267771 52267854 4483560 3 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 52307780 52308057 1 52382770 52383034 4483890 18 - - 1 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_6_T 231 891 7 230 224 891 -1 8 16 12 0,363636 extreme_oneoff GBM_6_T;chainID=1 1 52786515 52786742 1 52817098 52817276 4487311 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 10 136 137 873 127 920 -1 5 18 7 0,285714 simple NA 1 53137309 53137473 17 64048067 64048196 18429664 6 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_16_T 424 858 29 426 395 860 2 13 22 4 0,5 simple NA 1 53357332 53357641 6 167656912 167657151 5226111 11 + - 2 2 1 1 150 128 1 0 1 INTER cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 54347825 54348043 1 54360340 54360550 4495127 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 136 549 548 707 158 713 1 2 21 16 0,097561 simple NA 1 54636434 54636674 1 57506725 57506964 4496845 17 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 9 423 421 613 190 613 2 13 26 24 0,342105 simple NA 1 54682683 54682917 1 54684324 54684596 4497072 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 54683941 54684179 1 54685942 54686163 4497081 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 55651568 55651768 1 55708172 55708324 4501377 4 - + 2 5 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_5_T 233 420 420 859 187 871 0 5 13 7 0,333333 simple NA 1 56801753 56801811 16 85156219 85156265 18384719 3 + + 0 0 1 1 108 48 1 0 1 INTER cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 58942295 58942479 1 60305168 60305435 4531412 7 - + 0 0 1 1 150 120 1 0 1 INTRA cancer_singleSample LUAD_6_T 560 669 60 558 110 719 -2 9 19 113 0,12 mild_oneoff LUAD_6_T;chainID=1 1 59140731 59140844 1 59194061 59194213 4532555 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T 636 908 0 636 272 964 0 3 20 4 0,2 simple NA 1 61243916 61244038 1 61667612 61667750 4550445 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 61327443 61327520 1 61340679 61340838 4551159 4 - + 1 0 1 1 130 150 1 0 1 DUP cancer_singleSample OV_8_T 41 80 78 599 37 599 2 5 11 14 0,285714 simple NA 1 61492052 61492272 1 61556658 61556883 4552295 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 300 452 8 303 149 466 3 14 20 23 0,394366 simple NA 1 62819024 62819239 1 63261480 63261613 4561529 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 2 215 211 822 209 822 4 8 17 23 0,285714 simple NA 1 63017038 63017169 1 63022392 63022561 4562588 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 604 830 0 607 223 834 3 7 7 15 0,388889 simple NA 1 64762182 64762415 1 64765648 64765854 4574904 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 619 938 0 620 318 945 1 6 5 3 0,6 simple NA 1 65314685 65314943 1 65336860 65337103 4578794 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 66087428 66087721 1 66097940 66098993 4583569 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 66673819 66674069 7 127228502 127229639 5631118 3 + + 1 2 1 1 150 150 1 0 1 INTER cancer_singleSample OV_1_T 501 998 23 502 478 1027 1 4 7 16 0,258065 simple NA 1 66803741 66803979 1 67118017 67118282 4590905 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_4_T 429 738 11 432 306 756 3 5 20 16 0,217391 simple NA 1 67105273 67105388 1 67243783 67243914 4593465 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 381 526 183 384 142 526 3 5 22 11 0,232558 simple NA 1 67662697 67662953 1 233747886 233748131 4597666 10 - - 0 0 1 1 143 150 1 0 1 INTRA cancer_singleSample LUAD_1_T 8 292 292 770 284 780 0 5 14 22 0,217391 mild_oneoff LUAD_1_T;chainID=1 1 67703934 67704113 1 234390975 234391159 4597997 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_1_T 356 481 28 356 125 481 0 4 14 11 0,242424 mild_oneoff LUAD_1_T;chainID=1 1 67780997 67781267 1 195983406 195983636 4598536 5 - - 0 0 1 1 150 135 1 0 1 INTRA cancer_singleSample LUAD_1_T 325 769 31 319 289 777 -6 4 10 5 0,347826 mild_oneoff LUAD_1_T;chainID=1 1 67922796 67922890 1 67925997 67926136 4599365 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_6_T 72 690 688 1365 616 1365 2 1 22 13 0,0540541 simple NA 1 68848516 68848729 1 69012083 69012312 4607049 5 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_3_T 613 892 0 616 276 892 3 7 15 19 0,291667 simple NA 1 70424270 70424393 1 70428269 70428443 4622650 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_18_T 669 1278 0 671 607 1278 2 10 12 13 0,444444 simple NA 1 70816995 70817236 1 70823074 70823294 4625361 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 21 177 207 472 157 480 -30 5 14 29 0,188679 simple NA 1 71671135 71671372 1 71674598 71674841 4632602 15 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_5_T 0 649 648 995 346 995 1 5 12 15 0,27027 simple NA 1 72838402 72838685 5 159738071 159738348 5200117 22 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 563 725 33 562 163 955 -1 13 7 11 0,590909 simple NA 1 73236754 73236985 5 137948803 137949040 5200142 8 + - 1 0 1 1 150 108 1 0 1 INTER cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 1 73240000 73240272 1 74079547 74079814 4647718 13 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T 509 670 18 510 160 689 1 7 29 25 0,205882 extreme_stepwise LUSC_11_T;chainID=1 1 73249156 73249403 3 140908452 140908718 5125533 14 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 527 603 19 528 75 612 1 NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 1 73851142 73851448 1 92463383 92463690 4654051 16 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 1 73852381 73852584 5 159605128 159605354 5200204 14 - - 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 41 277 275 611 234 694 2 5 12 3 0,4 extreme_stepwise LUSC_11_T;chainID=1 1 73898645 73898787 5 137922150 137922280 5200208 3 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 544 938 12 544 394 945 0 8 32 23 0,225352 extreme_stepwise LUSC_11_T;chainID=1 1 74006991 74007145 1 74007944 74008095 4655445 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 443 564 32 444 120 715 1 12 14 8 0,521739 simple NA 1 74684846 74685076 1 74686801 74687121 4663356 16 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 609 607 824 215 858 2 7 16 14 0,318182 simple NA 1 74792790 74792960 1 74796480 74796674 4664333 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 75386591 75386788 1 76738971 76739218 4670560 16 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_2_T 646 761 0 636 116 788 -10 13 20 14 0,433333 simple NA 1 75638184 75638449 1 75641860 75642129 4672899 12 + - 0 0 1 1 150 140 1 0 1 DEL cancer_singleSample LUSC_13_T 0 613 616 1089 474 1120 -3 11 8 36 0,333333 simple NA 1 75871812 75872038 1 75882607 75882941 4675308 3 - - 1 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 76318393 76318641 1 76320465 76320701 4678796 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 10 343 342 640 297 644 1 8 7 8 0,516129 simple NA 1 77079522 77079665 1 85284248 85284428 4685068 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 1 406 414 729 316 729 -8 5 11 10 0,322581 simple NA 1 77079726 77079922 1 85284498 85284739 4685069 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 323 1125 0 315 316 1125 -8 5 22 11 0,232558 simple NA 1 77386977 77387166 1 77396243 77397224 4687959 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 78087551 78087751 1 78088884 78089144 4694016 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 137 759 758 942 183 954 1 2 7 22 0,121212 simple NA 1 78405026 78405292 3 135811788 135812022 5126830 12 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T 0 609 609 855 246 872 0 17 17 32 0,409639 simple NA 1 78439183 78439328 1 78441636 78441776 4696228 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 78565990 78566243 3 135886498 135886763 5126847 6 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 79506387 79506659 5 137178165 137178464 5201076 30 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 519 886 37 519 367 1063 0 20 17 29 0,465116 simple NA 1 80966082 80966214 1 81411347 81411525 4718164 3 - + 2 0 1 1 150 150 1 0 1 DUP cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 84219070 84219204 1 84237616 84237774 4746724 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 646 914 0 652 262 978 6 4 18 8 0,235294 simple NA 1 84516069 84516263 1 84734334 84734517 4749267 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 271 579 124 279 147 579 8 10 14 22 0,357143 simple NA 1 84517928 84518036 1 241169326 241169448 4749275 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 85147723 85147926 1 104852504 104852751 4754603 9 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T 374 974 26 374 348 974 0 5 16 11 0,27027 simple NA 1 85241490 85241705 1 85273463 85273710 4755218 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 15 612 611 968 356 984 1 1 14 18 0,0588235 simple NA 1 85614828 85615025 1 85617078 85617271 4757982 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 200 817 26 202 174 817 2 8 24 19 0,271186 simple NA 1 87144756 87144862 8 124548295 124548447 5679793 4 + + 0 0 1 1 51 150 1 0 1 INTER cancer_singleSample LUSC_13_T 259 523 520 972 261 1010 3 3 24 25 0,109091 simple NA 1 87440848 87441049 1 87442460 87442650 4772326 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 670 793 0 668 124 828 -2 5 15 2 0,37037 simple NA 1 88116777 88117062 1 88159553 88159802 4777574 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 224 733 0 228 224 737 4 4 5 9 0,363636 simple NA 1 88255816 88256056 5 179289702 179289953 5202283 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_2_T 983 1605 603 985 380 1605 2 1 20 14 0,0555556 simple NA 1 88637330 88637597 1 88639937 88640180 4782434 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 625 620 875 250 911 5 7 13 8 0,4 simple NA 1 90386341 90386705 6 123939894 123940272 5231857 26 + - 0 0 1 1 147 150 1 0 1 INTER cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_6_T;chainID=1 1 90440841 90441211 1 90454669 90455042 4796833 17 + + 2 1 1 1 146 129 1 0 1 INV cancer_singleSample GBM_6_T 0 585 585 825 240 840 0 12 17 9 0,48 extreme_oneoff GBM_6_T;chainID=1 1 90600660 90600873 1 90888749 90888989 4797960 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 0 612 609 767 155 767 3 7 15 10 0,358974 simple NA 1 90733093 90733256 2 242091737 242091941 5048016 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_8_T 0 651 648 750 99 780 3 4 16 19 0,186047 simple NA 1 90784754 90784935 1 90790111 90790281 4799301 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 0 612 607 832 220 847 5 9 12 19 0,367347 simple NA 1 90910268 90910458 2 136303109 136303338 5048044 8 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 0 614 613 916 302 922 1 4 18 28 0,148148 simple NA 1 92201750 92201953 1 92203683 92203883 4810056 5 + - 0 0 1 1 143 150 1 0 1 DEL cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 92675833 92676112 3 142719791 142720043 5129406 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 0 607 604 679 72 751 3 6 12 15 0,307692 simple NA 1 92929775 92929907 1 92933558 92933693 4814662 3 + - 2 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 220 827 13 221 207 827 1 5 7 11 0,357143 simple NA 1 94053704 94053907 1 94928795 94928931 4821637 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 56 575 574 682 107 689 1 9 30 27 0,24 simple NA 1 94123240 94123509 1 94160276 94160558 4821996 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 189 538 1 192 188 538 3 3 33 22 0,0983607 simple NA 1 94409497 94409725 1 94470997 94471297 4823691 11 - - 0 1 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T 222 685 31 219 189 685 -3 0 16 15 0 simple NA 1 94418862 94419077 1 94455811 94456004 4823742 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 94432071 94432207 1 95095614 95095827 4823838 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 634 914 0 607 281 917 -27 7 24 21 0,237288 simple NA 1 94488013 94488237 1 94488801 94489002 4824129 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 0 645 647 723 77 726 -2 NA NA NA NA simple NA 1 96136609 96136785 1 96172061 96172266 4836915 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_17_T 72 233 233 842 161 842 0 8 8 14 0,421053 simple NA 1 96388912 96389126 1 96390053 96390249 4839598 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 637 795 0 638 157 804 1 8 15 7 0,421053 simple NA 1 96409227 96409479 1 96410458 96410743 4839773 23 + - 0 3 1 1 150 137 1 0 1 DEL cancer_singleSample OV_4_T 0 602 599 937 335 965 3 20 11 4 0,727273 simple NA 1 96776677 96776798 1 96787503 96788505 4842702 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T 127 728 30 135 97 728 8 0 19 22 0 simple NA 1 97401902 97402212 1 97412709 97413066 4847939 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 97999533 97999684 1 98337924 98338094 4853418 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 454 642 639 1146 185 1170 3 6 24 19 0,218182 simple NA 1 98822586 98822742 1 98823309 98823492 4860860 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 176 863 30 178 146 863 2 7 18 6 0,368421 simple NA 1 104327683 104327898 1 104348114 104348272 3052982 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 384 998 23 383 361 998 -1 6 7 4 0,521739 simple NA 1 104719770 104719850 1 104720179 104720281 3057264 3 + - 0 1 1 1 139 150 1 0 1 DEL cancer_singleSample OV_10_T 38 585 568 655 70 671 17 NA NA NA NA simple NA 1 105502841 105502966 1 116980520 116980685 3063881 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 61 309 307 707 246 764 2 9 16 17 0,352941 simple NA 1 106407945 106408128 1 106426052 106426233 3071872 8 - + 0 0 1 1 150 141 1 0 1 DUP cancer_singleSample COAD_1_T 630 1257 0 630 627 1257 0 3 17 24 0,12766 simple NA 1 106598744 106598992 1 120051919 120052169 3073353 12 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 106896777 106896928 1 116722032 116722169 3076354 9 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 107081393 107081600 1 107085586 107085811 3077459 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 5 266 266 901 261 904 0 4 13 9 0,266667 simple NA 1 107614013 107614174 1 107617409 107617551 3082739 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 43 459 464 728 265 884 -5 4 18 9 0,228571 simple NA 1 108349685 108349995 1 108359599 108359846 3088805 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 608 605 890 282 909 3 7 14 17 0,311111 simple NA 1 108379284 108379465 1 108380946 108381141 3089072 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 606 845 0 610 235 857 4 2 11 18 0,121212 simple NA 1 108380981 108381192 1 108384799 108385106 3089085 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 608 999 0 610 389 1101 2 4 19 23 0,16 simple NA 1 109518964 109519190 5 170027274 170027467 5178930 6 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T 73 344 342 808 269 814 2 6 25 18 0,218182 simple NA 1 109750984 109751242 5 170285069 170285274 5178962 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 110150174 110150357 1 110152458 110152650 3100412 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 536 1004 0 765 239 1040 229 17 6 7 0,723404 simple NA 1 110595828 110596014 1 110936790 110937019 3102473 6 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 110965418 110965576 5 172836852 172837104 5179074 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample COAD_3_T 0 632 630 724 92 1242 2 7 13 13 0,35 simple NA 1 111151858 111152058 1 115195313 115195511 3104816 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T 83 434 432 829 349 837 2 4 18 20 0,173913 mild_oneoff BRCA_5_T;chainID=1 1 111653928 111654193 3 177017889 177018159 5087129 14 - - 1 3 1 1 150 146 1 0 1 INTER cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 111660273 111660424 3 177023300 177023485 5087130 3 + + 1 4 1 1 150 150 1 0 1 INTER cancer_singleSample OV_4_T 699 961 0 703 258 963 4 13 25 22 0,356164 simple NA 1 112690855 112691131 1 112704869 112704971 3116283 3 + + 1 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T 206 443 56 212 150 501 6 1 12 21 0,0571429 simple NA 1 113031654 113031953 1 113034242 113034566 3118608 12 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 24 468 392 611 143 650 76 8 9 10 0,457143 simple NA 1 113083905 113084051 1 113093772 113094099 3118867 3 - - 0 0 1 1 150 75 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 113844423 113844690 1 113860438 113860683 3122855 10 - + 0 0 1 1 150 115 1 0 1 DUP cancer_singleSample LUSC_13_T 0 612 609 798 186 803 3 13 22 31 0,329114 simple NA 1 113996259 113996455 1 114013113 114013271 3123713 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 656 1326 0 656 656 1326 0 5 13 22 0,222222 simple NA 1 114643527 114643780 8 125197157 125197418 5666234 13 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 0 610 608 855 245 855 2 9 10 23 0,352941 simple NA 1 114952791 114952998 1 115073960 115074153 3129806 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 107 413 71 110 36 712 3 2 20 18 0,0952381 mild_oneoff BRCA_5_T;chainID=1 1 115100642 115100859 1 120152765 120152889 3130597 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T 211 454 453 961 242 984 1 8 23 11 0,32 mild_oneoff BRCA_5_T;chainID=1 1 115173747 115173901 1 115177555 115177833 3131131 5 + - 0 1 1 1 126 142 1 0 1 DEL cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 115337447 115337733 1 115349622 115349881 3131979 20 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 622 619 724 102 737 3 7 13 18 0,311111 simple NA 1 116192156 116192386 1 116197175 116197391 3138251 3 + - 0 0 1 1 150 90 1 0 1 DEL cancer_singleSample BRCA_4_T 1 480 484 600 117 611 -4 7 14 4 0,4375 simple NA 1 116836407 116836696 1 116880189 116880440 3142512 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 465 915 28 466 437 935 1 9 20 16 0,333333 simple NA 1 118569045 118569258 7 145999339 145999603 5612377 7 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 322 505 503 988 181 995 2 3 2 6 0,428571 simple NA 1 118569326 118569530 7 145999617 145999782 5612378 4 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 0 626 624 690 64 704 2 NA NA NA NA simple NA 1 120025437 120025673 1 120030280 120030539 3167067 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 612 1018 0 609 407 1084 -3 7 3 16 0,424242 simple NA 1 120221247 120221318 2 130906766 130906987 4998037 4 + - 2 0 1 1 39 70 1 0 1 INTER cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 120748204 120748334 1 144006184 144006386 3179852 3 + - 0 0 1 1 128 150 1 0 1 INTRA cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 145005977 145006215 3 194355056 194355280 5110792 7 + + 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_7_T 130 234 235 639 105 656 -1 6 55 5 0,166667 simple NA 1 146706944 146707223 1 146709210 146709403 3405499 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 146959403 146959527 1 146981981 146982117 3408284 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 2 333 331 569 236 596 2 23 32 35 0,40708 simple NA 1 146977680 146977851 1 147065309 147065457 3408490 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 147116615 147116893 1 147120869 147121148 3409550 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 609 727 0 611 116 770 2 12 5 15 0,545455 simple NA 1 150522113 150522320 1 242610356 242610580 3444168 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 618 1065 0 621 444 1076 3 7 7 35 0,25 simple NA 1 150593702 150593951 1 150599958 150600191 3444547 5 + - 0 0 1 1 150 102 1 0 1 DEL cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 150626576 150626700 1 150647444 150647524 3444829 3 + - 0 0 1 1 150 132 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 151281846 151282029 1 151283302 151283492 3449447 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 152000431 152000573 1 152006845 152007041 3454158 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 534 744 188 537 207 774 3 2 18 21 0,0930233 simple NA 1 152003816 152004030 1 152034159 152034396 3454192 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 152813417 152813713 1 152816903 152817171 3465259 24 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 298 297 906 297 906 1 14 13 14 0,509091 simple NA 1 153198397 153198608 1 153202040 153202263 3468836 8 + - 0 0 1 1 150 43 1 0 1 DEL cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 154050495 154050728 1 154053732 154053984 3474116 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 154053161 154053451 3 164908802 164909099 5111713 22 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_3_T;chainID=3 1 154669105 154669232 1 154735382 154735630 3477871 5 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 154912479 154912787 1 154936955 154937202 3479138 10 - + 3 2 1 1 150 150 1 0 1 DUP cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 155034766 155034916 1 155400259 155400507 3479496 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 155278739 155278934 1 155283454 155283646 3480395 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 155367330 155367514 1 155374560 155374818 3481386 12 + - 0 0 1 1 147 93 1 0 1 DEL cancer_singleSample OV_6_T 12 298 291 449 151 456 7 1 16 15 0,0606061 simple NA 1 155458590 155458833 1 155471865 155472375 3482398 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 155686355 155686509 1 155701179 155701388 3484483 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 488 692 7 490 202 728 2 6 20 26 0,206897 simple NA 1 155860800 155861004 1 155864046 155864243 3486125 8 + - 0 1 1 1 138 150 1 0 1 DEL cancer_singleSample OV_6_T 0 375 371 585 210 586 4 3 16 13 0,171429 simple NA 1 155865092 155865194 1 156044959 156045061 3486214 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 440 518 5 440 78 527 0 NA NA NA NA simple NA 1 155865359 155865471 1 156044973 156045083 3486231 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 384 795 30 385 354 799 1 21 11 26 0,531646 simple NA 1 156290214 156290471 1 156296469 156296646 3488276 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 613 751 0 617 134 976 4 12 24 24 0,333333 simple NA 1 156417910 156418049 1 160094724 160094910 3488731 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 156469235 156469408 1 161389382 161389584 3488954 3 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_9_T 9 558 558 746 188 759 0 8 28 36 0,2 simple NA 1 157636122 157636356 1 158257590 158257842 3500048 7 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 156 763 24 157 132 763 1 9 19 23 0,3 simple NA 1 158496327 158496726 1 158510120 158510752 3511129 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 158524681 158524864 1 158528503 158528688 3511643 7 - + 0 0 1 1 150 135 1 0 1 DUP cancer_singleSample BRCA_9_T 85 539 539 834 295 866 0 23 30 37 0,40708 simple NA 1 159478901 159479179 1 159482347 159482583 3525357 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 526 883 14 530 353 888 4 3 28 22 0,107143 simple NA 1 159686858 159687115 1 159690414 159690723 3528314 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 608 699 0 608 91 707 0 NA NA NA NA simple NA 1 159962280 159962675 1 159971361 159972519 3531197 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 160972326 160972558 1 160975422 160975636 3541739 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 162315794 162315915 1 182762268 182762530 3555577 3 - + 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff BRCA_4_T;chainID=1 1 163521344 163521612 1 163523987 163524240 3567187 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 7 466 461 1071 454 1071 5 1 20 13 0,0571429 simple NA 1 163561256 163561431 1 163566248 163566476 3567628 8 + - 0 0 1 1 66 139 1 0 1 DEL cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 165010473 165010730 1 165014399 165014670 3582235 23 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 293 566 38 295 255 586 2 11 22 20 0,34375 simple NA 1 165807954 165808156 1 165848208 165848430 3587708 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 368 507 222 371 136 715 3 10 14 18 0,384615 simple NA 1 167351406 167351672 2 176954631 176955008 5025418 23 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_5_T 34 346 345 557 211 557 1 12 26 43 0,258065 simple NA 1 167639502 167639717 1 167650356 167650588 3603185 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 423 658 1 424 234 665 1 4 31 19 0,137931 simple NA 1 167764641 167764850 2 205244911 205245087 5025582 3 + + 2 0 1 1 107 150 1 0 1 INTER cancer_singleSample BRCA_2_T 790 1056 0 786 267 1064 -4 3 0 5 0,545455 simple NA 1 167764992 167765126 2 205245100 205245255 5025583 4 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 595 1030 0 591 436 1086 -4 2 0 8 0,333333 simple NA 1 167831355 167831645 1 167835853 167836125 3604381 20 + - 0 0 1 1 150 53 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 168702580 168702829 1 168705793 168706051 3616328 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 168958184 168958310 1 177905567 177905732 3629470 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_7_T 567 754 351 568 186 1314 1 15 12 19 0,491803 simple NA 1 169808062 169808251 1 169824464 169824682 3643551 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 170074566 170074670 3 174979692 174979899 5112985 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 398 621 31 400 221 638 2 4 20 32 0,133333 simple NA 1 171362780 171362980 1 171560646 171560945 3662171 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_9_T 0 614 610 682 68 683 4 NA NA NA NA simple NA 1 171545563 171545791 1 171548759 171548964 3663311 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 171570336 171570573 1 173765322 173765587 3663466 14 - + 0 1 1 1 92 150 1 0 1 INTRA cancer_singleSample OV_9_T 635 764 0 636 128 768 1 3 32 6 0,136364 simple NA 1 173511727 173511934 1 173668316 173668557 3684886 7 - + 0 0 1 1 150 83 1 0 1 DUP cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 174220126 174220270 1 174282585 174282716 3690314 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_11_T 0 105 100 584 100 588 5 4 23 31 0,129032 simple NA 1 174975427 174975631 1 174976477 174976711 3695677 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 602 602 708 106 723 0 8 14 13 0,372093 simple NA 1 175309056 175309344 3 183921680 183921978 5113504 12 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T 427 796 65 425 361 796 -2 15 14 47 0,32967 simple NA 1 175357916 175358200 3 183930713 183930987 5113505 23 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T 94 707 10 97 84 707 3 12 21 36 0,296296 simple NA 1 175708837 175709072 1 175852796 175853031 3701843 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 0 601 599 958 357 983 2 5 27 17 0,185185 simple NA 1 176007987 176008222 1 176012750 176012980 3704022 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 164 259 9 166 93 646 2 16 16 30 0,410256 simple NA 1 176070686 176070911 1 176104456 176104692 3704276 5 + - 0 0 1 1 147 150 1 0 1 DEL cancer_singleSample OV_3_T 36 507 503 1073 467 1073 4 4 21 4 0,242424 simple NA 1 176109942 176110202 1 176162885 176163114 3704637 15 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 176298874 176299067 1 176300405 176300625 3706142 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 622 620 750 128 792 2 14 28 18 0,378378 simple NA 1 177774591 177774702 1 179880017 179880225 3720922 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_7_T 70 183 181 392 111 494 2 5 13 9 0,3125 simple NA 1 178060515 178060742 1 178537861 178538035 3723483 3 - + 0 0 1 1 120 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff BRCA_4_T;chainID=2 1 178180541 178180741 1 178539986 178540164 3724423 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff BRCA_4_T;chainID=2 1 178538215 178538332 1 178766739 178766852 3726988 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_4_T 58 375 373 708 315 729 2 13 29 19 0,351351 mild_oneoff BRCA_4_T;chainID=2 1 179897749 179897926 1 179910104 179910255 3735868 8 - + 0 0 1 1 133 76 1 0 1 DUP cancer_singleSample OV_3_T 493 629 139 489 137 669 -4 5 12 12 0,294118 simple NA 1 180362241 180362434 1 183831306 183831406 3738356 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 2 359 373 643 271 808 -14 4 25 21 0,148148 simple NA 1 180602489 180602652 1 180905825 180905980 3739999 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 180629246 180629416 1 181976184 181976352 3740109 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 7 586 592 1216 580 1216 -6 3 23 18 0,12766 mild_oneoff BRCA_4_T;chainID=1 1 180740164 180740406 1 182748050 182748297 3740632 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 607 758 0 619 139 809 12 7 26 43 0,168675 mild_oneoff BRCA_4_T;chainID=1 1 181077253 181077514 1 181140536 181140789 3742414 16 - + 1 1 1 1 150 148 1 0 1 DUP cancer_singleSample OV_5_T 19 274 272 583 253 587 2 12 36 25 0,282353 simple NA 1 181436784 181436958 1 200226246 200226453 3745111 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 372 786 806 885 80 915 -20 1 27 23 0,0384615 simple NA 1 181835251 181835393 1 181838907 181839020 3748316 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 68 334 346 950 267 950 -12 10 17 14 0,392157 simple NA 1 181909353 181909632 1 181911004 181911248 3749191 19 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 192 742 2 194 190 781 2 16 15 17 0,5 simple NA 1 181975634 181975826 1 182746219 182746398 3749766 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff BRCA_4_T;chainID=1 1 182203923 182204188 1 182208933 182209206 3751622 14 + - 0 0 1 1 150 146 1 0 1 DEL cancer_singleSample LUSC_13_T 0 601 599 868 267 869 2 14 5 8 0,682927 simple NA 1 182307469 182307704 1 182936465 182936674 3752484 9 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 182444864 182445025 1 182745891 182746087 3753697 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 11 351 349 772 338 772 2 10 37 37 0,212766 mild_oneoff BRCA_4_T;chainID=1 1 182917850 182918062 1 182970057 182970255 3757044 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 183289268 183289446 1 183295247 183295486 3759385 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 1 459 455 675 216 707 4 8 24 8 0,333333 simple NA 1 185614124 185614308 1 185672587 185672760 3778242 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample COAD_3_T 634 718 718 1328 84 1328 0 7 14 16 0,318182 simple NA 1 185663320 185663505 1 185699189 185699363 3778640 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample READ_2_T 63 300 297 912 234 912 3 6 27 21 0,2 simple NA 1 185687470 185687713 1 185689347 185689537 3778869 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 623 996 0 623 373 1023 0 6 17 14 0,27907 simple NA 1 186205369 186205501 1 186319750 186320035 3783738 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 596 1203 118 584 467 1203 -12 4 9 15 0,25 simple NA 1 186995191 186995341 1 186996741 186996973 3789806 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 0 610 607 1220 607 1220 3 4 17 8 0,242424 simple NA 1 189253518 189253712 1 189322801 189323070 3809928 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_1_T 40 199 198 515 158 580 1 6 12 8 0,375 simple NA 1 189590404 189590524 1 189643097 189643249 3812878 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 577 699 212 577 122 699 0 5 7 28 0,222222 simple NA 1 189642995 189643135 1 189676895 189677042 3813320 4 - + 2 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 29 254 254 653 225 653 0 6 31 19 0,193548 simple NA 1 189886091 189886366 1 189887369 189887615 3815205 24 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 291 900 15 296 276 900 5 12 13 19 0,428571 simple NA 1 190390503 190390617 2 214201956 214202055 5028001 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 344 1048 26 347 318 1048 3 6 3 12 0,444444 simple NA 1 191201516 191201769 1 191204123 191204359 3827075 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 191412530 191412670 1 191414542 191414677 3828829 5 + - 0 0 1 1 50 34 1 0 1 DEL cancer_singleSample LUSC_1_T 81 252 269 792 172 839 -17 12 30 24 0,307692 simple NA 1 191423241 191423432 1 191425190 191425361 3828872 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_12_T 3 641 640 1172 531 1187 1 4 12 19 0,205128 simple NA 1 192142032 192142267 1 192144800 192145045 3834914 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 612 609 689 77 696 3 NA NA NA NA simple NA 1 192459771 192459970 1 192462410 192462597 3837927 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 193167229 193167385 1 193174148 193174323 3843718 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 653 653 695 42 709 0 NA NA NA NA simple NA 1 193514747 193514950 1 193663143 193663355 3846684 14 + - 0 0 1 1 147 149 1 0 1 DEL cancer_singleSample OV_3_T 582 1131 0 587 544 1131 5 0 9 7 0 simple NA 1 193780705 193780939 1 193782980 193783224 3849156 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 612 889 0 616 273 904 4 10 12 14 0,434783 simple NA 1 194939469 194939593 1 195011677 195011873 3858131 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_1_T 0 662 685 966 282 997 -23 6 2 3 0,705882 simple NA 1 195786158 195786324 1 195792180 195792368 3865487 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 175 231 3 175 56 285 0 7 15 9 0,368421 simple NA 1 196719397 196719551 1 196804302 196804470 3873440 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 196762569 196762770 1 196887725 196887924 3874141 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 196956106 196956259 1 196976929 196977079 3875350 3 + - 3 0 1 1 69 150 1 0 1 DEL cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 198083720 198083917 1 198089270 198089444 3884154 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 14 367 367 586 219 625 0 3 15 19 0,15 simple NA 1 199310303 199310474 1 199314239 199314490 3895539 6 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_12_T 628 920 0 631 289 963 3 6 10 4 0,461538 simple NA 1 199322203 199322330 1 199429411 199429534 3895744 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 200031996 200032125 1 200035018 200035192 3902216 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 61 474 473 766 292 776 1 7 5 12 0,451613 simple NA 1 201655541 201655749 1 201692059 201692270 3910744 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 626 632 1133 502 1133 -6 1 20 17 0,0512821 simple NA 1 201686843 201687073 1 201963963 201964173 3910877 5 - - 0 4 1 1 150 150 1 0 1 INV cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 202059006 202059240 1 202125371 202125558 3912923 5 + - 1 0 1 1 79 150 1 0 1 DEL cancer_singleSample BRCA_7_T 638 708 2 640 68 708 2 NA NA NA NA simple NA 1 202747003 202747163 1 205698732 205698922 3916104 8 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_14_T 229 547 547 600 53 747 0 8 16 30 0,258065 mild_stepwise GBM_14_T;chainID=1 1 202759537 202759714 1 203572584 203572732 3916188 19 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_14_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_14_T;chainID=1 1 202912644 202912793 1 203048384 203048511 3916969 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 507 895 17 504 389 895 -3 6 29 21 0,193548 simple NA 1 203130353 203130609 1 209584592 209584856 3917894 7 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T 173 410 407 1033 234 1034 3 12 18 20 0,387097 simple NA 1 203452739 203452999 1 203500363 203500621 3919790 17 - + 2 1 1 1 149 150 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 203472600 203472795 1 203618466 203618587 3919861 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 203572581 203572730 1 204449565 204449771 3920496 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_14_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_14_T;chainID=1 1 203601258 203601434 1 204530071 204530257 3920671 18 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_14_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_14_T;chainID=1 1 203687801 203688034 1 203693137 203693377 3921292 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 204097351 204097542 1 204099152 204099322 3924138 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_14_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 204176516 204176747 1 204427025 204427262 3924410 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 0 617 617 697 80 729 0 7 23 16 0,264151 simple NA 1 204229301 204229428 1 204268601 204268857 3924581 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 204262717 204262931 1 205452828 205453072 3924768 51 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 531 864 44 533 331 880 2 18 12 21 0,521739 simple NA 1 204333587 204333755 1 205483197 205483515 3925171 8 - - 5 2 1 1 145 150 1 0 1 INTRA cancer_singleSample GBM_5_T 42 197 197 895 155 895 0 9 10 21 0,367347 simple NA 1 204340049 204340282 1 204448722 204448936 3925216 23 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_14_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_14_T;chainID=1 1 204529310 204529558 1 205817738 205817993 3926122 16 + + 1 0 1 1 132 150 1 0 1 INTRA cancer_singleSample GBM_5_T 179 469 45 180 134 491 1 15 16 16 0,483871 simple NA 1 206192737 206193000 1 206195957 206196222 3933584 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 596 1212 0 595 596 1212 -1 6 19 22 0,226415 simple NA 1 207951866 207952130 1 207963128 207963408 3944041 8 - - 0 1 1 1 150 145 1 0 1 INV cancer_singleSample OV_5_T 58 445 443 628 183 628 2 9 33 29 0,225 simple NA 1 208199888 208200130 1 208216903 208217143 3945094 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 208211250 208211473 1 208354319 208354540 3945113 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 0 592 593 711 119 883 -1 18 36 19 0,395604 simple NA 1 208216930 208217219 1 208252069 208252314 3945121 12 + + 1 1 1 1 150 150 1 0 1 INV cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 208291167 208291420 1 208294191 208294390 3945475 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 614 1060 0 614 446 1060 0 8 30 20 0,242424 simple NA 1 209306893 209307100 1 209323663 209323870 3954198 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 9 412 412 1011 403 1011 0 8 25 12 0,301887 simple NA 1 209501676 209501894 1 209614065 209614303 3955553 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_8_T 150 802 77 152 73 802 2 10 33 33 0,232558 simple NA 1 209505025 209505209 1 209551192 209551330 3955614 5 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T 357 539 32 358 181 558 1 1 28 5 0,0571429 simple NA 1 209878533 209878812 1 211252936 211253159 3958831 9 - - 0 0 1 1 150 139 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_3_T;chainID=1 1 209879248 209879475 1 211279556 211279907 3958836 31 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_3_T;chainID=1 1 210284588 210284701 1 210289506 210289661 3961567 3 + - 1 0 1 1 32 150 1 0 1 DEL cancer_singleSample GBM_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 210423554 210423788 1 210430345 210430623 3962367 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 61 237 232 842 171 842 5 7 24 11 0,285714 simple NA 1 210931376 210931584 1 210933267 210933524 3965861 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 609 606 875 266 921 3 6 16 4 0,375 simple NA 1 210967918 210968127 1 211278665 211278930 3966068 15 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_3_T 558 852 0 558 294 854 0 4 10 2 0,4 extreme_oneoff GBM_3_T;chainID=1 1 210968042 210968182 1 218774393 218774514 3966082 7 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 485 670 17 485 185 672 0 37 24 7 0,704762 extreme_oneoff GBM_3_T;chainID=1 1 210968056 210968193 1 222857715 222857949 3966083 9 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 0 533 531 1184 531 1184 2 0 14 29 0 extreme_oneoff GBM_3_T;chainID=1 1 210968255 210968506 1 218778799 218779082 3966089 13 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 85 693 692 930 237 931 1 8 5 3 0,666667 extreme_oneoff GBM_3_T;chainID=1 1 211253088 211253356 1 218778997 218779285 3968540 20 - - 0 0 1 1 88 150 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_3_T;chainID=1 1 211253245 211253413 1 218779174 218779372 3968539 4 - + 0 0 1 1 101 150 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_3_T;chainID=1 1 211277937 211278053 1 218774395 218774531 3968766 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_3_T;chainID=1 1 211279261 211279507 1 222862505 222862786 3968769 18 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 6 329 329 892 323 899 0 12 14 4 0,571429 extreme_oneoff GBM_3_T;chainID=1 1 211279875 211279985 1 218779009 218779148 3968772 3 + + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 554 835 29 555 280 839 1 6 8 21 0,292683 extreme_oneoff GBM_3_T;chainID=1 1 212322984 212323212 1 212324814 212325001 3975451 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 272 920 10 272 262 920 0 8 13 10 0,410256 simple NA 1 214021796 214022128 1 214028343 214028582 3987461 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_7_T 220 827 12 222 208 831 2 6 10 27 0,244898 simple NA 1 214157633 214157852 1 214163226 214163458 3988638 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 216069670 216069888 1 216070343 216070574 4004474 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 604 676 0 609 67 730 5 7 16 25 0,254545 simple NA 1 216238559 216238742 1 221052234 221052349 4006093 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_8_T 683 1150 0 683 467 1176 0 5 23 36 0,144928 simple NA 1 217325655 217325787 1 217337775 217337984 4015970 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_9_T 222 752 54 222 168 758 0 6 23 20 0,218182 simple NA 1 218088136 218088404 1 218097382 218097616 4022735 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 628 754 0 612 127 771 -16 2 0 19 0,173913 simple NA 1 218774393 218774516 1 218779139 218779349 4027787 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_3_T 0 633 628 715 82 721 5 NA NA NA NA extreme_oneoff GBM_3_T;chainID=1 1 219120464 219120618 1 219130254 219130455 4030901 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 338 582 32 331 245 613 -7 6 27 16 0,218182 simple NA 1 219520499 219520629 1 219521304 219521416 4034841 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 643 643 683 40 683 0 NA NA NA NA simple NA 1 220327024 220327272 1 223159485 223159697 4040884 6 - + 0 0 1 1 88 150 1 0 1 INTRA cancer_singleSample BRCA_7_T 189 586 20 182 163 697 -7 6 27 29 0,176471 simple NA 1 221527710 221527824 1 221535620 221535760 4051453 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 552 646 13 553 93 744 1 1 24 16 0,047619 simple NA 1 221798808 221799097 1 221808781 221809219 4054144 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 223051855 223052031 1 223082488 223082720 4065755 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 568 621 642 755 54 956 -21 6 18 27 0,210526 simple NA 1 224777366 224777628 1 224800926 224801181 4076264 5 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUAD_5_T 38 193 194 707 156 872 -1 1 8 6 0,125 mild_oneoff LUAD_5_T;chainID=1 1 224777687 224777805 1 224801295 224801421 4076266 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUAD_5_T 38 193 194 707 156 872 -1 1 4 13 0,105263 mild_oneoff LUAD_5_T;chainID=1 1 224781329 224781534 1 224783524 224783745 4076297 3 + - 0 0 1 1 150 138 1 0 1 DEL cancer_singleSample LUAD_5_T 0 564 561 825 261 838 3 3 15 22 0,139535 mild_oneoff LUAD_5_T;chainID=1 1 225122015 225122789 1 225134505 225135228 4079241 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 225717297 225717399 1 225717733 225717837 4085912 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 225827194 225827444 1 225854682 225854981 4086552 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 226001968 226002197 1 226018353 226018516 4087356 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 0 104 102 302 102 324 2 9 24 28 0,257143 simple NA 1 226517801 226517976 1 226519087 226519336 4089587 8 + - 1 1 1 1 130 150 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 226979849 226980097 1 226992477 226992732 4091772 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 227091291 227091490 1 227092654 227092896 4092394 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 229418117 229418760 1 229429998 229430192 4105277 3 - - 1 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 229665330 229665528 1 229666832 229667069 4106532 13 + - 0 0 1 1 110 131 1 0 1 DEL cancer_singleSample OV_10_T 581 761 0 583 178 775 2 6 0 1 0,923077 simple NA 1 229733889 229734155 1 229819564 229819773 4106823 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 512 947 6 514 433 962 2 4 15 18 0,195122 simple NA 1 230132666 230132823 1 231171950 231172195 4109684 10 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 338 399 14 339 60 399 1 NA NA NA NA simple NA 1 230299910 230300175 1 230351910 230352171 4110445 23 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 5 473 472 959 467 964 1 31 41 37 0,442857 simple NA 1 231629482 231629696 1 231634866 231635098 4117488 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 232561184 232561410 1 232915074 232915305 4123743 7 + - 1 2 1 1 150 150 1 0 1 DEL cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 232561892 232562145 1 232587744 232588033 4123745 21 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_2_T 463 908 3 466 442 922 3 10 23 26 0,289855 simple NA 1 233103717 233103889 1 233108674 233108920 4127077 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 428 989 0 428 428 1032 0 4 20 18 0,173913 simple NA 1 233244873 233245079 1 233246967 233247172 4128222 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 0 602 600 1169 567 1172 2 6 13 10 0,342857 simple NA 1 234564021 234564282 1 234587501 234587954 4138568 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 13 579 581 799 219 828 -2 8 9 0 0,64 simple NA 1 235163138 235163363 1 235404136 235404277 4141336 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 216 848 81 210 130 848 -6 5 18 25 0,188679 simple NA 1 235316855 235317050 1 235320372 235320579 4141829 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 311 308 525 214 550 3 8 12 22 0,32 simple NA 1 235586729 235586980 1 235589128 235589370 4143112 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_2_T 607 868 12 610 258 897 3 2 15 23 0,0952381 simple NA 1 235854692 235854877 1 235869438 235869668 4144565 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 35 226 224 690 189 696 2 8 32 29 0,207792 simple NA 1 236688280 236688489 1 236689124 236689305 4149299 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 184 308 96 189 88 408 5 9 27 30 0,24 simple NA 1 237180779 237181029 1 237203185 237203420 4152263 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T 0 622 621 1231 609 1231 1 9 21 13 0,346154 simple NA 1 238494716 238494958 1 238498841 238499069 4161424 15 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 153 511 8 154 145 792 1 14 17 13 0,482759 simple NA 1 238759478 238759622 1 238760208 238760335 4163278 3 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 141 688 0 142 141 688 1 4 16 22 0,173913 simple NA 1 241882216 241882428 1 241885256 241885504 4186868 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 348 818 30 351 318 835 3 0 10 21 0 simple NA 1 242904127 242904247 1 242981263 242981393 4193738 3 - + 0 0 1 1 150 77 1 0 1 DUP cancer_singleSample BRCA_4_T 234 486 481 648 162 652 5 5 35 34 0,126582 simple NA 1 244453743 244453974 1 244994474 244994644 4201527 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 315 751 9 316 306 766 1 10 27 34 0,246914 simple NA 1 244637930 244638039 1 244639703 244639830 4202615 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 410 764 11 410 354 860 0 5 32 26 0,147059 simple NA 1 245030110 245030324 1 245031882 245032044 4204815 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 34 193 191 400 157 400 2 8 7 7 0,533333 simple NA 1 245031923 245032062 1 245554603 245554837 4204821 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 40 99 96 579 56 579 3 7 5 9 0,5 simple NA 1 245129182 245129504 1 246059484 246059795 4205370 9 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_2_T 0 576 575 799 223 808 1 9 23 15 0,321429 simple NA 1 245271194 245271426 1 245429535 245429789 4206292 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_2_T 0 625 621 993 368 993 4 0 19 13 0 simple NA 1 245359789 245360044 1 245491931 245492191 4206630 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_5_T 8 501 501 776 275 779 0 8 56 35 0,149533 simple NA 1 246311540 246311777 1 246542205 246542421 4211326 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 1 210 209 467 208 467 1 23 13 17 0,605263 simple NA 1 246369122 246369259 1 246393926 246394063 4211590 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample READ_2_T 118 740 0 120 118 740 2 1 27 15 0,0454545 simple NA 1 246540509 246540632 1 246544129 246544277 4212355 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 1 246546939 246547228 1 246713602 246713868 4212378 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 607 740 0 608 132 743 1 9 29 29 0,236842 simple NA 1 247556255 247556478 1 247644708 247644975 4216911 9 + - 1 0 1 1 144 150 1 0 1 DEL cancer_singleSample OV_9_T 41 547 552 1006 455 1026 -5 4 23 11 0,190476 simple NA 1 248642878 248643001 1 248732078 248732201 4227847 4 - - 2 0 1 1 91 150 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 366368 366581 2 370622 370905 7009814 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 345 591 42 347 244 614 2 4 10 5 0,347826 simple NA 2 838713 838900 2 52493779 52493977 7363597 9 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 294 559 64 294 230 563 0 22 17 36 0,453608 simple NA 2 1944781 1944883 2 1946340 1946511 6618572 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 742 1027 0 746 281 1062 4 3 16 8 0,2 simple NA 2 2059105 2059301 8 140896631 140896836 7851857 8 + - 2 1 1 1 140 150 1 0 1 INTER cancer_singleSample OV_4_T 557 727 0 558 169 744 1 2 5 15 0,166667 simple NA 2 3363304 3363501 2 3379858 3380081 6986635 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 689 684 967 278 969 5 18 6 3 0,8 simple NA 2 3459009 3459253 8 84574683 84574911 7857738 5 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_8_T 48 339 337 860 289 870 2 5 34 23 0,149254 simple NA 2 4266460 4267539 9 21550275 21550714 7871483 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 4436006 4436111 2 54162322 54162461 7063668 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 476 608 57 478 130 623 2 6 19 30 0,196721 extreme_stepwise LUSC_11_T;chainID=5 2 4567276 4567439 3 123592292 123592458 7742284 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 4636764 4637108 2 4643951 4644280 7076552 5 + - 2 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 4805151 4805314 3 123595173 123595327 7742820 3 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_2_T 0 671 682 909 228 927 -11 7 9 37 0,233333 simple NA 2 5253424 5253676 2 60725742 60726008 7124554 7 + - 0 2 1 1 146 133 1 0 1 INTRA cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 5680657 5680887 8 27713582 27713788 7860249 8 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_6_T 149 222 222 312 73 721 0 5 12 8 0,333333 simple NA 2 9036991 9037177 2 9038157 9038340 7438335 6 + - 0 0 1 1 95 150 1 0 1 DEL cancer_singleSample LUSC_11_T 27 323 319 973 292 973 4 4 11 13 0,25 simple NA 2 9349431 9349619 2 9778973 9779199 7689646 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 9401789 9402036 2 27931089 27931313 7689793 5 - - 2 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_5_T 619 964 0 620 344 996 1 7 21 20 0,254545 simple NA 2 9442592 9442822 2 161503262 161503543 7689931 13 + + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_5_T 299 873 82 303 217 902 4 9 17 29 0,28125 simple NA 2 9681130 9681319 2 9687617 9687745 7702250 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 0 595 593 921 326 953 2 6 14 16 0,285714 simple NA 2 13650657 13650912 2 55450268 55450519 6162625 8 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=5 2 13651183 13651440 2 155936887 155937152 6162640 33 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 284 410 40 286 124 485 2 17 20 23 0,441558 extreme_stepwise LUSC_11_T;chainID=5 2 14570509 14570664 4 175737521 175737668 7760668 5 + + 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 711 922 0 714 208 949 3 3 18 7 0,193548 simple NA 2 15359318 15359502 6 29922199 29922379 7808636 4 - - 1 2 1 1 150 142 1 0 1 INTER cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 15409266 15409479 2 15421118 15421340 6309267 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 607 694 0 608 86 694 1 NA NA NA NA simple NA 2 16550487 16550704 2 16552773 16553032 6395608 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 615 615 1177 562 1212 0 7 9 2 0,56 simple NA 2 17657352 17657454 2 17847555 17847740 6474434 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 30 377 374 481 104 508 3 3 19 17 0,142857 simple NA 2 17767898 17768020 2 19800974 19801114 6481235 4 - - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 18890061 18890227 2 19419275 19419445 6575893 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T 606 1224 0 609 606 1224 3 6 14 31 0,210526 simple NA 2 19416693 19416825 2 19419305 19419419 6616046 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample READ_2_T 254 890 54 256 200 890 2 12 14 26 0,375 simple NA 2 20195329 20195466 2 21921456 21921720 6674859 9 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 23489234 23489463 2 117553320 117553575 6897070 23 + + 0 0 1 1 150 135 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=5 2 24219935 24220200 3 50055457 50055627 7732359 9 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_2_T 0 577 578 759 182 790 -1 4 24 35 0,119403 simple NA 2 24437347 24437516 2 24448463 24448618 6925864 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 0 475 473 955 473 958 2 3 24 27 0,105263 simple NA 2 24858293 24858486 2 24867056 24867247 6928717 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 25121269 25121528 2 65074072 65074326 6929964 12 - - 0 2 1 1 150 144 1 0 1 INTRA cancer_singleSample OV_5_T 0 607 597 883 276 922 10 6 8 20 0,3 simple NA 2 25399119 25399354 2 25459605 25459871 6931331 10 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_5_T 612 1065 0 614 451 1083 2 10 22 6 0,416667 simple NA 2 25716121 25716407 2 25718862 25719166 6932622 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 420 820 21 421 399 839 1 12 18 14 0,428571 simple NA 2 26062575 26062729 2 26065151 26065463 6934667 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 26202574 26202858 2 26236776 26237048 6935450 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 607 605 969 362 1007 2 9 15 4 0,486486 simple NA 2 27081868 27082020 2 27114940 27115113 6939154 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_12_T 569 917 2 571 346 919 2 5 17 12 0,25641 simple NA 2 27342020 27342312 2 27343359 27343638 6940035 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 584 1052 18 583 469 1084 -1 2 2 7 0,307692 simple NA 2 28373676 28373882 2 28379495 28379723 6945554 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 395 952 70 395 325 952 0 12 17 12 0,45283 simple NA 2 28646554 28646786 2 29210338 29210597 6947152 11 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 28663244 28663502 2 29521347 29521613 6947199 26 - + 0 0 1 1 146 147 1 0 1 DUP cancer_singleSample OV_3_T 59 289 289 712 230 737 0 16 18 17 0,477612 simple NA 2 28887882 28888045 2 28912661 28912880 6948458 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_8_T 0 576 578 737 160 737 -2 6 24 20 0,214286 simple NA 2 29001984 29002120 2 55434666 55434814 6949342 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=5 2 29002573 29002844 2 54234655 54234849 6949344 17 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=5 2 29021656 29021810 2 29027204 29027372 6949454 4 + - 1 2 1 1 150 89 1 0 1 DEL cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 30206550 30206710 2 30220638 30220783 6958193 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 30312049 30312231 2 55435344 55435463 6958972 6 + + 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 214 926 93 211 119 930 -3 18 16 36 0,409091 extreme_stepwise LUSC_11_T;chainID=5 2 30312177 30312331 2 54235722 54235891 6958973 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=5 2 30491825 30492068 2 30824631 30824813 6959899 4 + - 0 0 1 1 142 150 1 0 1 DEL cancer_singleSample BRCA_1_T 10 365 363 701 336 730 2 3 8 6 0,3 simple NA 2 31690107 31690380 2 159764285 159764605 6967352 6 + + 0 1 1 1 150 144 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 31816205 31816316 2 55247740 55247912 6968247 4 - + 0 0 1 1 55 150 1 0 1 INTRA cancer_singleSample OV_10_T 18 431 428 563 132 608 3 8 7 6 0,551724 simple NA 2 31913904 31914093 20 46322076 46322268 20666043 8 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T 43 549 548 811 262 813 1 12 19 31 0,324324 simple NA 2 32099890 32100210 2 32103312 32103585 6970610 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_3_T 0 585 595 1189 586 1189 -10 2 1 19 0,166667 simple NA 2 32304669 32304824 2 32802140 32802320 6971818 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T 657 923 0 659 264 936 2 10 14 13 0,425532 simple NA 2 32328164 32328398 X 108703093 108703305 2427501 11 - - 0 0 1 1 138 150 1 0 1 INTER cancer_singleSample LUSC_13_T 0 603 618 1081 464 1085 -15 5 74 10 0,106383 simple NA 2 32374598 32374700 2 32401709 32401929 6972257 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 268 711 3 269 265 714 1 2 2 15 0,190476 simple NA 2 32510087 32510359 2 74519556 74519795 6973273 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 371 447 48 372 75 487 1 2 14 13 0,129032 extreme_stepwise LUSC_11_T;chainID=5 2 32558069 32558177 2 32736689 32736816 6973446 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 32591756 32591884 2 55435946 55436172 6973573 4 - + 0 0 1 1 134 94 1 0 1 INTRA cancer_singleSample LUSC_11_T 430 650 28 430 220 664 0 5 19 11 0,25 extreme_stepwise LUSC_11_T;chainID=5 2 32882232 32882577 2 161604168 161604502 6975182 3 - + 4 3 1 1 104 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 32906614 32906917 2 32921215 32921425 6975248 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 637 929 0 639 290 932 2 2 8 0 0,333333 simple NA 2 33206017 33206200 2 40305558 40305764 6983998 6 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 429 823 36 432 391 824 3 1 34 9 0,0444444 extreme_stepwise LUSC_11_T;chainID=5 2 33206609 33206865 2 44437977 44438230 6984028 10 - + 0 0 1 1 150 144 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 607 605 712 105 728 2 10 23 3 0,434783 extreme_stepwise LUSC_11_T;chainID=5 2 33349580 33349686 2 34011346 34011452 6984861 3 + - 3 6 1 1 129 88 1 0 1 DEL cancer_singleSample GBM_6_T 0 653 653 719 66 719 0 NA NA NA NA simple NA 2 33602207 33602423 2 33622863 33623070 6986464 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 33724712 33724975 2 105197656 105197863 6987204 7 - - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 615 823 0 613 209 828 -2 8 28 20 0,25 simple NA 2 34020145 34020348 9 114301328 114301415 7870584 3 - + 0 0 1 1 100 100 1 0 1 INTER cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 34206068 34206315 2 161661205 161661450 6989857 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 34621942 34622265 2 34823249 34823576 6993112 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 35019256 35019486 2 35054553 35054882 6995945 11 - + 0 0 1 1 71 150 1 0 1 DUP cancer_singleSample LUAD_5_T 133 413 34 137 99 413 4 18 10 21 0,537313 simple NA 2 35790026 35790219 2 35974305 35974476 7003055 6 - - 0 0 1 1 66 44 1 0 1 INV cancer_singleSample GBM_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 36225234 36225364 2 36226174 36226294 7006372 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 590 782 21 551 193 797 -39 1 22 4 0,0714286 simple NA 2 36261073 36261311 2 36262344 36262557 7006680 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 603 776 0 605 171 811 2 7 14 13 0,341463 simple NA 2 36293692 36293833 2 36335849 36335980 7007119 7 - + 0 0 1 1 146 150 1 0 1 DUP cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 36403481 36403741 8 82432277 82432523 7858094 9 + + 0 0 1 1 138 150 1 0 1 INTER cancer_singleSample LUSC_1_T 1 467 463 858 391 858 4 10 12 19 0,392157 simple NA 2 37385249 37385420 2 37388496 37388696 7014585 3 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 38192212 38192404 2 38622213 38622473 7020200 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 481 829 7 485 344 848 4 12 30 39 0,258065 simple NA 2 38338529 38338662 2 38517915 38518056 7020896 3 - + 1 0 1 1 66 150 1 0 1 DUP cancer_singleSample BRCA_10_T 266 458 7 265 193 458 -1 23 30 27 0,446602 simple NA 2 39006468 39006748 2 44920712 44920978 7024774 13 + + 2 0 1 1 142 150 1 0 1 INTRA cancer_singleSample OV_5_T 10 577 574 893 316 922 3 7 16 29 0,237288 simple NA 2 39691059 39691249 2 78165764 78166000 7029001 32 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 293 410 22 236 118 410 -57 23 14 18 0,589744 extreme_stepwise LUSC_11_T;chainID=5 2 40305242 40305513 2 185016257 185016534 7033697 35 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 7 280 277 761 270 785 3 30 6 17 0,722892 extreme_stepwise LUSC_11_T;chainID=5 2 40306783 40307041 2 57620756 57621025 7033729 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 5 241 234 800 229 827 7 9 13 14 0,4 extreme_stepwise LUSC_11_T;chainID=5 2 40536754 40536983 7 123608845 123609068 7840887 5 - - 0 0 1 1 76 150 1 0 1 INTER cancer_singleSample LUSC_13_T 17 570 568 618 48 619 2 NA NA NA NA simple NA 2 40660391 40660520 2 40662717 40662850 7036844 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 41774249 41774483 2 41784379 41784836 7048031 3 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 42518585 42518752 2 42703923 42704134 7053268 14 - + 0 0 1 1 143 128 1 0 1 DUP cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 42555247 42555539 2 43570945 43571232 7053484 18 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 607 964 0 610 354 964 3 18 13 15 0,5625 extreme_stepwise LUSC_11_T;chainID=5 2 42695130 42695301 2 42712706 42712887 7054308 4 + - 0 0 1 1 150 116 1 0 1 DEL cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 42916600 42916813 2 47948331 47948453 7055696 9 - + 0 1 1 1 150 81 1 0 1 INTRA cancer_singleSample OV_10_T 26 96 93 673 67 673 3 8 8 16 0,4 simple NA 2 42968702 42968826 2 43844674 43844786 7056011 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 25 333 331 465 132 465 2 2 42 16 0,0645161 simple NA 2 42971562 42971815 2 42975487 42975766 7056025 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 42992307 42992503 2 43399107 43399253 7056070 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 434 808 8 431 375 813 -3 7 7 24 0,311111 simple NA 2 43029527 43029726 2 43365503 43365655 7056194 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 43440958 43441202 2 43449442 43449638 7057833 9 - + 2 0 1 1 124 150 1 0 1 DUP cancer_singleSample OV_4_T 614 749 0 616 133 784 2 7 15 24 0,264151 simple NA 2 43441150 43441411 2 43980765 43981018 7057834 3 - + 2 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 600 675 0 603 72 688 3 NA NA NA NA simple NA 2 43569149 43569284 2 44439516 44439742 7058639 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 26 162 160 777 134 778 2 11 11 10 0,511628 extreme_stepwise LUSC_11_T;chainID=5 2 44670972 44671237 2 44752574 44752832 7065548 17 + - 0 0 1 1 150 125 1 0 1 DEL cancer_singleSample LUSC_13_T 18 116 115 541 97 575 1 18 24 17 0,467532 simple NA 2 45468723 45468894 2 45471531 45471677 7070622 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_12_T 0 635 631 1240 605 1240 4 3 18 23 0,12766 simple NA 2 46023432 46023582 2 46033667 46033826 7074352 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 0 623 621 828 205 828 2 5 26 19 0,181818 simple NA 2 46567343 46567471 2 46578860 46579031 7077590 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 46648428 46648610 2 46652920 46653191 7077859 10 - + 1 1 1 1 141 139 1 0 1 DUP cancer_singleSample OV_4_T 224 832 30 227 194 833 3 8 8 11 0,457143 simple NA 2 47256846 47257030 2 47273032 47273244 7081124 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 47516913 47517102 2 48168141 48168361 7082504 5 + - 3 4 1 1 84 150 1 0 1 DEL cancer_singleSample OV_11_T 0 613 609 805 192 812 4 3 10 8 0,25 simple NA 2 47707609 47707878 2 47788820 47789101 7083907 16 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 581 1120 1 584 536 1126 3 13 25 21 0,361111 simple NA 2 48011662 48011917 2 48183179 48183470 7085836 7 - + 3 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_9_T 105 685 3 109 102 706 4 2 12 6 0,181818 simple NA 2 50183943 50184168 2 50185273 50185538 7104264 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_1_T 610 1150 0 611 539 1151 1 6 31 25 0,176471 simple NA 2 50235087 50235320 2 95888646 95888842 7104611 4 + + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=5 2 50236945 50237231 2 80187729 80187995 7104641 43 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 608 774 0 610 164 781 2 28 19 13 0,636364 extreme_stepwise LUSC_11_T;chainID=5 2 50788119 50788384 5 175126817 175127071 7797562 16 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 50793412 50793564 5 175129865 175130064 7797564 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 10 455 453 908 443 915 2 1 2 15 0,105263 simple NA 2 51458013 51458307 2 51640650 51640943 7114411 47 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 82 392 391 1000 309 1000 1 31 39 42 0,433566 simple NA 2 51793266 51793541 3 178598661 178598943 7743471 11 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_5_T 486 919 21 487 432 953 1 5 22 55 0,114943 mild_stepwise LUSC_5_T;chainID=5 2 51946146 51946392 2 55458860 55459074 7119048 10 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T 0 615 615 1241 615 1241 0 5 26 25 0,163934 simple NA 2 52312930 52313157 2 52313655 52313851 7122396 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 579 577 626 47 650 2 NA NA NA NA simple NA 2 52814733 52814879 2 52852043 52852239 7126856 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 0 639 637 804 165 809 2 6 10 15 0,324324 simple NA 2 52994117 52994349 2 53009135 53009389 7128298 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 53347579 53347819 2 53349809 53350070 7131880 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 307 695 10 306 297 695 -1 9 40 41 0,181818 simple NA 2 53495643 53495909 3 126131196 126131471 7743715 23 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 54061457 54061679 2 55509315 55509496 7137957 5 - + 0 0 1 1 130 150 1 0 1 INTRA cancer_singleSample BRCA_1_T 505 766 10 499 262 828 -6 2 27 2 0,121212 simple NA 2 54162130 54162379 2 154144750 154145002 7138592 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 606 990 0 605 385 992 -1 2 31 18 0,0754717 extreme_stepwise LUSC_11_T;chainID=5 2 54162722 54162940 2 55434885 55435086 7138597 7 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 20 249 246 711 226 711 3 0 43 26 0 extreme_stepwise LUSC_11_T;chainID=5 2 54235646 54235770 2 55435345 55435459 7139025 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 230 436 54 222 169 457 -8 19 10 23 0,535211 extreme_stepwise LUSC_11_T;chainID=5 2 54544401 54544676 2 54547216 54547484 7141063 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 455 573 4 458 115 611 3 6 27 33 0,166667 simple NA 2 55343228 55343371 2 55392497 55392633 7145928 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_16_T 0 646 642 785 139 818 4 8 12 13 0,390244 simple NA 2 55436503 55436630 2 95889163 95889309 7146486 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=5 2 55436542 55436785 2 153634512 153634671 7146487 17 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 648 648 776 128 794 0 23 20 22 0,522727 extreme_stepwise LUSC_11_T;chainID=5 2 55449019 55449327 2 56700321 56700587 7146537 57 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 607 610 707 98 727 -3 26 15 22 0,58427 extreme_stepwise LUSC_11_T;chainID=5 2 55665924 55666195 2 61536345 61536550 7147802 19 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 55684675 55684923 2 61536345 61536545 7147925 31 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 0 450 450 954 450 962 0 19 38 41 0,324786 simple NA 2 56222740 56222918 2 56234017 56234207 7151116 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 56563501 56563756 2 57621838 57622079 7153890 10 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 374 701 9 377 324 728 3 9 13 14 0,4 extreme_stepwise LUSC_11_T;chainID=5 2 56565206 56565462 2 219331152 219331406 7153905 30 - + 0 2 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 37 340 340 588 248 599 0 17 4 16 0,62963 extreme_stepwise LUSC_11_T;chainID=5 2 56704468 56704591 2 74517412 74517588 7155387 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 716 852 0 722 130 878 6 2 19 9 0,125 extreme_stepwise LUSC_11_T;chainID=5 2 56816099 56816309 2 56817837 56818019 7156698 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 217 802 35 221 182 802 4 4 5 10 0,347826 simple NA 2 56816913 56817051 2 56827019 56827719 7156703 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 56860692 56860899 2 57120616 57120812 7157167 6 - + 0 0 1 1 113 150 1 0 1 DUP cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 57198855 57199138 2 57205228 57205520 7161227 43 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 550 825 33 553 272 825 3 27 19 17 0,6 simple NA 2 57540835 57541017 2 63881724 63881893 7164705 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T 376 645 82 376 269 648 0 10 27 23 0,285714 simple NA 2 57735986 57736226 2 57751169 57751380 7166514 15 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 58215146 58215260 2 58216159 58216310 7170680 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 32 263 260 446 183 469 3 2 35 33 0,0555556 simple NA 2 58378898 58379087 2 58379585 58379795 7171789 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 58399571 58399762 2 58401254 58401398 7171882 4 + - 0 0 1 1 150 49 1 0 1 DEL cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 58539130 58539283 2 58539667 58539827 7172633 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_12_T 0 640 626 697 57 766 14 1 11 0 0,153846 simple NA 2 58549374 58549561 2 58550724 58550871 7172723 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 59029406 59029673 2 59030929 59031223 7176426 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 246 856 69 248 177 856 2 13 7 13 0,565217 simple NA 2 60031738 60032003 2 60045977 60046273 7186761 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 500 958 171 499 329 1013 -1 6 28 29 0,173913 simple NA 2 61645038 61645252 2 61657740 61658008 7197757 28 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 62483118 62483219 2 62483698 62483777 7203342 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 465 1037 37 465 428 1037 0 7 0 1 0,933333 simple NA 2 63045083 63045347 2 63055313 63055595 7207565 26 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T 516 890 899 1131 233 1363 -9 9 18 27 0,285714 simple NA 2 64044550 64044698 2 64328674 64328854 7215731 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 64505896 64506130 3 105198833 105199061 7745542 7 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T 205 570 570 910 340 971 0 8 28 29 0,219178 simple NA 2 64753598 64753883 2 65530219 65530464 7220608 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 65026037 65026256 2 78934597 78934834 7221910 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_8_T 372 1145 238 375 134 1145 3 3 3 4 0,461538 simple NA 2 65026280 65026478 2 78934865 78935111 7221913 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_8_T 260 869 153 263 107 869 3 1 2 4 0,25 simple NA 2 65028916 65029125 2 65037065 65037331 7221928 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 425 808 4 423 384 843 -2 8 21 27 0,25 simple NA 2 65642823 65642928 2 65644088 65644331 7225036 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 0 605 602 707 102 722 3 2 7 5 0,25 mild_oneoff BRCA_5_T;chainID=2 2 65642956 65643187 3 176071494 176071717 7745770 5 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T 527 1057 50 531 477 1093 4 5 8 9 0,37037 mild_oneoff BRCA_5_T;chainID=2 2 65643751 65644016 3 176071237 176071449 7745771 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T 0 656 652 813 157 1115 4 4 7 10 0,32 mild_oneoff BRCA_5_T;chainID=2 2 65729889 65730161 2 65736516 65736798 7225572 8 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 66614331 66614564 2 66633042 66633268 7232161 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T 607 899 0 608 291 900 1 2 26 28 0,0689655 mild_oneoff LUSC_3_T;chainID=6 2 66624192 66624319 2 66643374 66643514 7232175 5 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_3_T 0 294 291 547 253 547 3 1 13 20 0,0571429 mild_oneoff LUSC_3_T;chainID=6 2 66632872 66633078 2 66644326 66644552 7232221 5 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_3_T;chainID=6 2 66884453 66884599 2 66890643 66890811 7233586 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 67026687 67026888 2 67044169 67044408 7235033 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T 659 855 0 650 197 867 -9 3 31 28 0,0923077 simple NA 2 67810928 67811096 2 68435631 68435941 7242776 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 468 709 0 470 239 730 2 8 23 13 0,307692 simple NA 2 68074054 68074343 2 68391503 68391743 7245287 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_9_T 487 1101 11 489 476 1106 2 3 11 22 0,153846 simple NA 2 68152436 68152607 2 68235045 68235224 7245929 8 - + 2 2 1 1 150 119 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_5_T;chainID=4 2 68629683 68629782 2 68630608 68630810 7249548 5 + - 0 1 1 1 85 119 1 0 1 DEL cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 68796603 68796798 2 68826254 68826368 7250910 4 - + 0 0 1 1 150 42 1 0 1 DUP cancer_singleSample BRCA_1_T 239 504 10 240 229 513 1 6 7 22 0,292683 simple NA 2 69978088 69978303 2 69978809 69979066 7259530 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 27 287 286 496 209 500 1 9 13 11 0,428571 simple NA 2 70155037 70155205 2 70155912 70156096 7260580 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 19 102 100 708 81 708 2 1 21 18 0,0487805 simple NA 2 70581211 70581384 2 70584734 70584960 7262566 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 645 643 948 303 988 2 7 20 21 0,254545 simple NA 2 70583729 70583877 2 70584648 70584759 7262581 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 605 658 0 606 52 676 1 NA NA NA NA simple NA 2 71256628 71256775 2 71281752 71281922 7266208 4 - - 0 1 1 1 50 150 1 0 1 INV cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 72678469 72678717 2 75553889 75554132 7274884 6 + - 1 4 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_4_T 24 164 162 587 138 620 2 11 11 14 0,468085 simple NA 2 72814574 72814706 2 72912613 72912752 7275868 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 232 642 16 227 212 642 -5 2 20 13 0,108108 simple NA 2 72877262 72877495 2 112925737 112925956 7276261 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 27 455 456 973 429 1005 -1 5 6 10 0,384615 simple NA 2 73855052 73855202 2 73915010 73915154 7281745 3 - + 1 0 1 1 116 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 73861286 73861461 6 137928185 137928384 7823317 11 - + 0 2 1 1 102 139 1 0 1 INTER cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 73861722 73861929 6 137124435 137124626 7823318 7 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 74261028 74261288 2 74894972 74895229 7284295 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 11 432 429 502 70 508 3 NA NA NA NA simple NA 2 74541700 74541908 2 74719136 74719290 7285613 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 75131748 75131901 2 75136581 75136739 7288224 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 75799681 75799812 2 75801623 75801745 7293921 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 77764235 77764447 2 77779791 77780022 7310623 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T 0 608 604 1208 600 1208 4 5 18 14 0,238095 simple NA 2 78041886 78042019 2 78115986 78116126 7312972 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 78085805 78086109 2 78088052 78088312 7313380 22 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 78157044 78157271 2 82782179 82782416 7314063 9 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 484 647 22 484 163 669 0 0 8 10 0 extreme_stepwise LUSC_11_T;chainID=5 2 78283451 78283734 2 78664414 78664695 7315168 36 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 609 728 0 613 115 741 4 14 15 11 0,518519 simple NA 2 78685174 78685380 2 78733304 78733574 7319547 11 - + 0 0 1 1 146 150 1 0 1 DUP cancer_singleSample LUSC_13_T 35 383 380 662 279 666 3 2 26 22 0,0769231 simple NA 2 78687473 78687738 2 78729079 78729380 7319670 17 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 61 481 478 730 249 743 3 8 23 25 0,25 simple NA 2 80335622 80335834 2 80338665 80338925 7332453 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 328 934 19 330 309 934 2 6 17 19 0,25 simple NA 2 80724630 80724831 X 83357364 83357562 2437174 4 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T 7 290 302 418 117 624 -12 4 15 12 0,228571 simple NA 2 81434447 81434705 2 81447620 81448668 7342339 3 - - 0 0 1 1 129 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 81896461 81896722 2 86136644 86136890 7346685 6 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T 587 1081 0 587 494 1082 0 4 9 5 0,363636 simple NA 2 81943438 81943559 2 82784227 82784378 7347124 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T 0 731 729 1037 306 1063 2 10 11 16 0,425532 extreme_stepwise LUSC_11_T;chainID=5 2 82736605 82736806 2 82744744 82744924 7354048 5 + - 0 0 1 1 50 135 1 0 1 DEL cancer_singleSample OV_6_T 0 627 563 1194 563 1194 64 29 10 10 0,74359 simple NA 2 82764229 82764411 2 82777301 82777502 7354336 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 333 899 898 1077 178 1096 1 9 13 21 0,346154 simple NA 2 83840197 83840393 2 83849806 83849993 7363096 6 + - 0 2 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 585 1169 0 589 580 1174 4 4 3 9 0,4 simple NA 2 84041676 84041848 2 84043234 84043480 7364972 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 84779408 84779639 2 84785675 84785847 7371611 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 85769983 85770069 2 85841210 85841384 7377577 5 - + 0 0 1 1 150 107 1 0 1 DUP cancer_singleSample OV_7_T 296 886 24 298 272 886 2 5 10 11 0,322581 simple NA 2 86140295 86140419 2 170712216 170712373 7378877 3 + + 0 0 1 1 150 84 1 0 1 INTRA cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 86290865 86291024 2 86367725 86367864 7379605 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 86386783 86386968 2 86387782 86388046 7380130 16 + - 0 0 1 1 145 150 1 0 1 DEL cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 86475344 86475585 2 86529312 86529572 7380512 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 522 684 27 525 159 684 3 15 27 26 0,361446 simple NA 2 86578414 86578586 2 86579115 86579252 7381086 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 86599615 86599895 2 86602413 86602700 7381205 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 615 613 723 108 728 2 10 12 10 0,47619 simple NA 2 88835677 88835886 2 88836714 88836872 7412868 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 89302599 89302803 2 124335000 124335193 7420895 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_1_T 0 579 579 1008 429 1008 0 4 14 1 0,347826 extreme_oneoff LUAD_1_T;chainID=2 2 91955607 91955854 2 91964200 91964361 7665548 8 - + 0 0 1 1 80 76 1 0 1 DUP cancer_singleSample BRCA_5_T 341 516 26 342 174 551 1 4 9 34 0,156863 simple NA 2 95329273 95329446 2 116874022 116874292 7690195 5 - + 0 0 1 1 80 150 1 0 1 INTRA cancer_singleSample LUAD_1_T 575 921 1 575 346 961 0 1 10 4 0,125 simple NA 2 95739694 95739909 8 134384996 134385121 7863856 4 + + 2 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 95889255 95889457 2 153634520 153634666 7692922 10 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 213 866 61 217 152 901 4 10 14 14 0,416667 extreme_stepwise LUSC_11_T;chainID=5 2 95914170 95914385 2 95916158 95916323 7693015 6 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 96887714 96887987 2 96920857 96921129 7702546 13 - + 0 0 1 1 103 150 1 0 1 DUP cancer_singleSample OV_10_T 381 548 0 380 168 548 -1 6 14 14 0,3 simple NA 2 98291486 98291704 2 98306481 98306719 7714075 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 6 193 189 338 145 338 4 8 47 13 0,210526 simple NA 2 98916496 98916672 2 142651140 142651298 7717497 5 + - 2 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_4_T 0 599 597 1007 408 1143 2 5 14 14 0,263158 simple NA 2 99084592 99084830 2 99119494 99119745 7718346 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 99807485 99807608 2 103838355 103838460 7721837 3 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 239 534 7 208 202 555 -31 18 17 10 0,571429 simple NA 2 99856306 99856474 4 109702665 109702743 7782814 3 - - 1 2 1 1 108 35 1 0 1 INTER cancer_singleSample OV_3_T 420 556 31 431 125 556 11 0 23 20 0 simple NA 2 100027471 100027573 2 100034536 100034666 5911063 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 0 655 654 912 257 912 1 7 16 23 0,264151 simple NA 2 100080453 100080674 7 148877306 148877540 7827085 10 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_10_T 219 534 531 679 145 689 3 6 7 12 0,387097 mild_oneoff OV_10_T;chainID=1 2 100085368 100085525 7 148877602 148877773 7827086 5 - + 0 0 1 1 150 129 1 0 1 INTER cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_10_T;chainID=1 2 100247529 100247746 2 104010271 104010475 5912196 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 100263873 100264029 2 100283629 100283850 5912269 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 557 853 0 559 294 859 2 3 15 2 0,26087 simple NA 2 100999000 100999180 2 100999842 101000079 5917232 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 228 420 1 225 193 420 -3 8 16 39 0,225352 simple NA 2 101244255 101244511 2 101248670 101248995 5918694 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 56 376 374 968 318 1084 2 9 17 8 0,418605 simple NA 2 101458399 101458654 2 101949881 101950093 5919865 11 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise BRCA_4_T;chainID=4 2 101529699 101529956 2 101533412 101533671 5920357 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 101947117 101947273 2 101948339 101948594 5922321 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 576 875 0 575 300 878 -1 18 30 41 0,336449 mild_stepwise BRCA_4_T;chainID=4 2 102035017 102035253 2 102138614 102138892 5922688 25 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise BRCA_4_T;chainID=4 2 102517743 102517860 2 104620327 104620644 5925470 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_1_T 593 938 0 593 345 938 0 4 16 4 0,285714 extreme_oneoff LUAD_1_T;chainID=2 2 102606431 102606714 2 102822492 102822771 5926151 12 - + 2 1 1 1 147 145 1 0 1 DUP cancer_singleSample OV_5_T 470 607 7 473 134 607 3 3 17 24 0,12766 simple NA 2 102731996 102732150 2 102733458 102733696 5926942 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 40 648 650 1031 382 1031 -2 6 22 26 0,2 simple NA 2 102785031 102785266 2 102797345 102797590 5927274 12 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T 364 514 4 365 149 535 1 5 18 26 0,185185 simple NA 2 103046678 103047098 2 103056179 103056848 5929160 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 103222751 103223009 2 103234040 103234328 5930228 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 15 514 511 747 233 787 3 6 24 33 0,173913 simple NA 2 104240638 104240985 2 104251297 104252698 5938137 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 104516270 104516578 2 162091520 162091824 5940478 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T 402 490 0 404 86 527 2 0 14 9 0 simple NA 2 104625918 104626109 2 104627776 104627936 5941416 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 52 496 494 805 309 817 2 4 23 14 0,177778 simple NA 2 104629776 104629972 2 117429240 117429370 5941428 4 - - 0 0 1 1 132 95 1 0 1 INTRA cancer_singleSample LUAD_1_T 0 620 620 1269 620 1269 0 2 50 13 0,0597015 extreme_oneoff LUAD_1_T;chainID=2 2 104927968 104928209 2 104929054 104929324 5943365 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 609 602 832 223 852 7 8 14 22 0,307692 simple NA 2 105140246 105140472 2 162093057 162093279 5944433 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T 588 1282 0 576 577 1282 -12 1 12 7 0,0952381 simple NA 2 105348244 105348503 2 133393263 133393550 5945685 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 600 855 0 604 251 857 4 5 14 11 0,285714 extreme_stepwise LUSC_11_T;chainID=5 2 105350311 105350432 2 113898326 113898508 5945697 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 221 469 22 209 188 489 -12 3 18 9 0,181818 extreme_stepwise LUSC_11_T;chainID=5 2 105696573 105696829 2 111624279 111624552 5947505 5 - + 0 3 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T 11 354 354 461 107 465 0 4 1 6 0,533333 simple NA 2 106342517 106342710 2 195586871 195587083 5950369 5 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 106377364 106377649 2 106403018 106403129 5950487 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 49 361 358 772 309 852 3 4 10 12 0,266667 simple NA 2 106469723 106469895 2 114642755 114642935 5950874 3 + - 2 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T 658 900 0 658 242 910 0 6 14 14 0,3 simple NA 2 106607168 106607806 2 106617825 106618649 5951535 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 107279028 107279214 2 107286185 107286364 5956738 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 359 663 8 359 304 739 0 5 21 11 0,238095 simple NA 2 109387490 109387701 2 109398867 109399135 5974268 8 - + 0 0 1 1 131 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 606 605 794 188 794 1 6 11 22 0,266667 simple NA 2 109534306 109534544 2 109546213 109546443 5975255 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 111720149 111720347 2 111724262 111724471 5987768 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 650 648 1074 424 1107 2 9 12 16 0,391304 simple NA 2 112427350 112427597 3 173240434 173240705 7725689 11 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T 0 614 614 716 102 729 0 19 15 48 0,376238 simple NA 2 112748089 112748334 2 112816265 112816545 5992501 39 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 112915553 112915663 2 112917333 112917647 5993292 6 - + 0 2 1 1 68 117 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 113382562 113382741 2 113500464 113500682 5995308 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample READ_2_T 612 752 0 609 141 765 -3 10 28 27 0,266667 simple NA 2 113428277 113428533 2 113434622 113434845 5995488 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 608 606 690 82 690 2 NA NA NA NA simple NA 2 113866865 113867119 2 113919828 113920114 5998138 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_2_T 448 640 1 450 190 646 2 4 13 14 0,228571 simple NA 2 113899247 113899543 2 184172534 184172769 5998365 20 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 628 883 0 629 254 927 1 20 9 20 0,57971 extreme_stepwise LUSC_11_T;chainID=5 2 114011834 114012069 2 114119150 114119399 5998702 9 - + 1 2 1 1 150 93 1 0 1 DUP cancer_singleSample OV_5_T 12 258 256 503 244 573 2 4 21 22 0,156863 simple NA 2 114499739 114499975 2 119187670 119187936 6000501 7 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T 0 601 599 823 222 826 2 10 4 23 0,425532 simple NA 2 115662205 115662414 2 116372258 116372523 6009328 6 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_11_T 625 997 0 624 373 1011 -1 5 12 10 0,3125 extreme_stepwise OV_11_T;chainID=1 2 117537779 117538014 2 117539070 117539304 6025215 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 611 1075 0 615 460 1133 4 6 12 15 0,307692 simple NA 2 117551390 117551611 2 189762442 189762581 6025300 14 - + 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 505 713 31 504 209 731 -1 15 35 21 0,348837 extreme_stepwise LUSC_11_T;chainID=5 2 117666875 117667083 2 117677447 117677653 6026421 10 + - 0 0 1 1 32 150 1 0 1 DEL cancer_singleSample OV_6_T 5 277 274 656 269 688 3 7 70 12 0,145833 simple NA 2 118052555 118052642 2 119134803 119135062 6029776 3 - + 1 1 1 1 150 129 1 0 1 INTRA cancer_singleSample OV_10_T 0 591 586 914 323 917 5 5 5 7 0,454545 simple NA 2 119158686 119158972 2 119171482 119172023 6039130 3 - - 0 0 1 1 150 107 1 0 1 INV cancer_singleSample BRCA_3_T 387 624 57 428 196 640 41 0 16 12 0 simple NA 2 121657530 121657709 2 121666257 121666438 6052171 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 335 614 0 336 278 614 1 2 21 19 0,0909091 simple NA 2 122441463 122441691 2 122446970 122447230 6055544 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 122564281 122564379 2 122564701 122564834 6056153 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 38 484 472 702 218 702 12 6 0 1 0,923077 simple NA 2 123580220 123580431 2 123599344 123599579 6064478 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 143 786 16 145 127 786 2 6 25 27 0,1875 simple NA 2 123980826 123981025 2 123981878 123982132 6068966 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 141 137 661 137 661 4 3 16 22 0,136364 simple NA 2 123995032 123995122 2 124011406 124011530 6069106 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 124160556 124160809 2 124161756 124161995 6070961 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 605 603 918 313 922 2 4 9 6 0,347826 simple NA 2 124513811 124513907 2 124515229 124515347 6074462 4 + - 0 0 1 1 87 150 1 0 1 DEL cancer_singleSample OV_3_T 707 769 0 709 60 786 2 NA NA NA NA simple NA 2 125309078 125309349 2 144082387 144082663 6081591 33 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=5 2 126850475 126850714 2 126851481 126851688 6095854 21 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 126878361 126878604 2 126914811 126915010 6096136 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_9_T 0 612 611 1254 611 1254 1 4 3 11 0,363636 simple NA 2 127009510 127009654 2 127010615 127010801 6097383 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 269 493 31 272 221 512 3 9 13 11 0,428571 simple NA 2 127770216 127770475 2 127772371 127772634 6102810 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 626 623 701 75 701 3 NA NA NA NA simple NA 2 127879049 127879263 2 127880346 127880545 6103065 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 128835185 128835399 2 128835915 128836102 6107212 7 + - 3 4 1 1 150 129 1 0 1 DEL cancer_singleSample OV_4_T 236 940 0 240 236 970 4 4 5 5 0,444444 simple NA 2 129147524 129147798 2 129670409 129670686 6108446 12 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_7_T 0 618 615 785 167 786 3 9 16 17 0,352941 simple NA 2 130193918 130194159 2 130196197 130196442 6114145 12 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 50 512 512 670 158 670 0 12 11 3 0,631579 simple NA 2 130975073 130975148 2 132214207 132214321 6123057 3 + + 1 0 1 1 109 79 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 131033994 131034189 2 132140569 132141017 6123539 3 - + 0 1 1 1 71 108 1 0 1 INTRA cancer_singleSample BRCA_3_T 70 278 270 556 200 568 8 2 50 22 0,0526316 simple NA 2 133308414 133308704 2 135038463 135038769 6139528 36 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 606 603 850 244 876 3 20 16 13 0,57971 extreme_stepwise LUSC_11_T;chainID=5 2 133392491 133392760 2 135035912 135036153 6140032 10 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 182 663 3 182 179 665 0 8 21 7 0,363636 extreme_stepwise LUSC_11_T;chainID=5 2 133542279 133542538 2 133774974 133775262 6141114 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 574 1064 52 569 491 1107 -5 3 8 21 0,171429 simple NA 2 133879463 133879635 2 133950808 133950974 6144089 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 485 801 23 488 313 803 3 10 17 19 0,357143 simple NA 2 134238593 134238762 2 134265912 134266130 6147200 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 134499096 134499283 2 134550454 134550615 6149162 5 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_2_T 0 316 316 665 316 683 0 3 26 18 0,12 simple NA 2 134912137 134912342 2 134924776 134924925 6151825 3 + + 1 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 135017798 135018046 2 158337744 158338010 6152545 22 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 630 769 1 610 140 798 -20 22 16 14 0,594595 extreme_stepwise LUSC_11_T;chainID=5 2 135186937 135187231 2 135380775 135381056 6154286 21 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 406 596 24 407 189 646 1 13 6 14 0,565217 simple NA 2 135326326 135326572 2 135332876 135333107 6155225 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 33 254 253 471 217 506 1 5 26 25 0,163934 simple NA 2 136141106 136141223 2 136172378 136172524 6160324 3 + - 0 0 1 1 99 32 1 0 1 DEL cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 136978963 136979122 2 163742407 163742601 6165638 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 39 570 568 733 163 767 2 2 18 38 0,0666667 simple NA 2 137501138 137501415 2 137507599 137507872 6170282 18 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 13 542 541 706 164 737 1 7 24 13 0,27451 simple NA 2 137785934 137786075 2 149470132 149470295 6172595 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T 56 404 416 702 287 738 -12 1 12 11 0,08 simple NA 2 138469989 138470189 2 138477328 138477582 6178296 4 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 138499772 138499938 2 142786936 142787123 6178681 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample COAD_3_T 0 608 607 1215 607 1215 1 4 0 11 0,421053 simple NA 2 139935288 139935483 2 139936388 139936573 6193349 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 604 601 763 159 779 3 5 14 23 0,212766 simple NA 2 140200534 140200917 2 140210552 140211015 6195672 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 140747091 140747373 2 140781705 140781937 6200961 8 - + 0 0 1 1 143 146 1 0 1 DUP cancer_singleSample LUAD_3_T 603 904 0 605 299 906 2 4 11 9 0,285714 simple NA 2 140922929 140923178 2 141321010 141321282 6202272 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 424 746 17 422 323 746 -2 0 19 20 0 mild_oneoff LUAD_5_T;chainID=4 2 140937232 140937496 2 141032435 141032706 6202413 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 2 607 607 696 89 713 0 5 27 23 0,166667 mild_oneoff LUAD_5_T;chainID=4 2 140955643 140955876 2 141143365 141143670 6202611 6 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 0 608 600 828 220 842 8 2 29 27 0,0666667 mild_oneoff LUAD_5_T;chainID=4 2 141065925 141066135 3 186373289 186373501 7728670 4 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_1_T;chainID=1 2 141066193 141066354 3 186373715 186373885 7728671 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_1_T;chainID=1 2 141415650 141415821 2 141856998 141857239 6206539 5 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_2_T 0 609 615 750 136 754 -6 6 15 21 0,25 simple NA 2 141575358 141575675 2 141848729 141848965 6207742 9 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_10_T 5 160 157 762 152 762 3 8 2 11 0,551724 simple NA 2 141661162 141661389 2 141737901 141738087 6208340 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 604 742 0 607 135 747 3 5 14 17 0,243902 mild_oneoff LUSC_13_T;chainID=7 2 141678743 141678866 2 141917869 141917989 6208499 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_11_T 639 1258 0 636 620 1258 -3 4 19 15 0,190476 simple NA 2 141704376 141704566 2 141732157 141732442 6208804 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 612 802 0 614 188 815 2 7 27 33 0,189189 simple NA 2 141781762 141781968 2 142139362 142139588 6209493 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 0 177 172 802 172 802 5 1 29 18 0,0408163 simple NA 2 141812682 141812893 2 142019801 142020043 6209798 9 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 616 800 0 619 181 818 3 12 19 7 0,48 mild_oneoff LUSC_13_T;chainID=7 2 141813481 141813775 2 141828972 141829239 6209816 9 + - 0 0 1 1 150 43 1 0 1 DEL cancer_singleSample LUSC_13_T 25 421 419 619 198 684 2 4 14 124 0,0547945 mild_oneoff LUSC_13_T;chainID=7 2 141942440 141942638 2 142067871 142068075 6210999 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_10_T 665 1193 0 665 528 1195 0 4 17 23 0,166667 simple NA 2 142000617 142000804 2 142292565 142292793 6211481 5 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T 20 519 519 860 341 1275 0 1 5 18 0,08 mild_oneoff LUSC_13_T;chainID=7 2 142052308 142052468 2 142844333 142844516 6211813 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 15 173 187 583 159 613 -14 1 14 13 0,0689655 mild_oneoff LUSC_13_T;chainID=7 2 142107659 142107794 2 142113637 142113886 6212159 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 0 609 606 778 169 806 3 5 15 18 0,232558 simple NA 2 142389265 142389487 2 142549503 142549695 6214132 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 55 573 580 769 190 791 -7 6 12 25 0,244898 simple NA 2 142445553 142445748 2 142674894 142675149 6214678 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 133 357 353 615 220 628 4 6 12 18 0,285714 simple NA 2 144078353 144078602 2 153639032 153639272 6228463 28 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 621 729 0 591 109 731 -30 22 4 14 0,709677 extreme_stepwise LUSC_11_T;chainID=5 2 144639396 144639638 2 144647251 144647487 6233253 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_1_T 400 1025 80 403 320 1025 3 6 12 22 0,26087 simple NA 2 144906208 144906467 2 221532698 221532974 6235083 6 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 79 601 598 1133 519 1152 3 4 29 20 0,140351 simple NA 2 144919742 144919927 2 144926726 144926914 6235184 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 145257739 145257858 2 145258487 145258610 6237517 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 146066431 146066596 2 146068880 146069139 6245709 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 107 772 8 108 99 772 1 4 24 17 0,163265 simple NA 2 146243475 146243603 2 146249098 146249236 6248215 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 146330808 146331079 2 146334852 146335109 6249131 19 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 326 458 19 330 128 474 4 7 22 17 0,264151 simple NA 2 147321825 147321959 2 147325490 147325641 6258337 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 0 625 623 1003 378 1029 2 3 7 18 0,193548 simple NA 2 148777396 148777612 2 148786239 148786473 6271087 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 39 323 340 951 285 951 -17 5 26 24 0,166667 simple NA 2 148859937 148860093 2 148862217 148862403 6271614 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 149664884 149665070 2 199036785 199036974 6276996 7 + + 2 4 1 1 148 147 1 0 1 INTRA cancer_singleSample OV_4_T 158 731 11 159 147 758 1 3 7 18 0,193548 simple NA 2 149977192 149977311 2 149982722 149982871 6278331 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 442 445 681 237 696 -3 2 0 17 0,190476 simple NA 2 151135116 151135306 2 167581323 167581574 6287743 18 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 83 669 0 86 83 673 3 11 16 16 0,407407 simple NA 2 151139664 151139910 2 198959878 198960102 6287802 7 - - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 614 980 0 614 366 1007 0 7 21 14 0,285714 simple NA 2 153128214 153128355 2 153130229 153130462 6301961 8 + - 0 0 1 1 150 44 1 0 1 DEL cancer_singleSample GBM_12_T 0 609 612 1058 447 1074 -3 14 11 16 0,509091 simple NA 2 153383557 153383834 3 171101380 171101653 7729515 16 - - 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 153884064 153884336 2 153938101 153938351 6307461 40 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 401 572 13 403 169 594 2 0 39 25 0 simple NA 2 154102929 154103189 2 218818842 218819101 6309375 31 + - 0 0 1 1 134 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 480 1090 24 462 439 1090 -18 20 13 4 0,701754 extreme_stepwise LUSC_11_T;chainID=5 2 154361505 154361689 2 154463067 154463365 6311334 7 - + 2 2 1 1 143 150 1 0 1 DUP cancer_singleSample OV_1_T 0 596 596 1203 596 1203 0 6 13 1 0,461538 simple NA 2 154819579 154819814 2 154953737 154953946 6315151 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 154861946 154862092 2 154875898 154876079 6315373 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 158336439 158336626 2 189762438 189762581 6343694 11 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 712 712 805 93 834 0 9 12 14 0,409091 extreme_stepwise LUSC_11_T;chainID=5 2 158359952 158360099 2 158365669 158365825 6343830 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 158932212 158932347 2 158942568 158943035 6347323 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 158932551 158932866 2 158942749 158943684 6347332 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 159262613 159263012 2 159278044 159279182 6350579 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 159278917 159279172 2 159282967 159283214 6350759 20 + - 0 0 1 1 145 150 1 0 1 DEL cancer_singleSample LUSC_13_T 613 743 0 608 131 806 -5 15 18 16 0,46875 simple NA 2 159957732 159957861 2 161018702 161018814 6354725 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 160427503 160427688 2 161386442 161386700 6358035 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 160708941 160709111 2 160713049 160713207 6359724 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 2 259 264 712 258 1056 -5 2 0 25 0,137931 simple NA 2 160896426 160896599 2 160909029 160909241 6361140 6 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_4_T 138 888 5 141 133 888 3 7 17 21 0,269231 simple NA 2 161866222 161866459 2 161867275 161867509 6367614 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T 404 1014 22 407 382 1014 3 6 20 14 0,26087 simple NA 2 162259174 162259369 2 162990823 162991054 6370599 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 163946245 163946518 3 175017828 175018074 7730311 8 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 164462866 164463101 2 164625529 164625758 6387733 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_4_T 2 170 169 797 167 797 1 14 14 14 0,5 simple NA 2 164840460 164840752 2 189749155 189749384 6390632 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 0 104 105 713 105 715 -1 11 18 14 0,407407 simple NA 2 165076499 165076670 2 165080018 165080192 6392357 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 678 677 1291 613 1291 1 9 10 21 0,367347 simple NA 2 165211288 165211448 2 165316222 165316402 6393422 4 + - 0 0 1 1 150 117 1 0 1 DEL cancer_singleSample LUAD_5_T 48 229 246 471 182 471 -17 0 31 19 0 simple NA 2 165584477 165584723 2 165599699 165599961 6396163 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 380 921 24 382 356 921 2 8 29 34 0,202532 mild_oneoff LUSC_13_T;chainID=8 2 165692209 165692473 2 165694696 165694922 6397042 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 144 449 446 694 245 724 3 0 30 35 0 mild_oneoff LUSC_13_T;chainID=8 2 165695746 165695940 2 165716135 165716411 6397048 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 635 797 0 640 157 808 5 9 31 35 0,214286 mild_oneoff LUSC_13_T;chainID=8 2 165795391 165795641 2 165797331 165797626 6397931 15 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 7 279 279 456 177 526 0 9 24 16 0,310345 mild_oneoff LUSC_13_T;chainID=8 2 165800138 165800334 2 165843314 165843556 6397968 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 632 637 752 116 776 -5 11 31 33 0,255814 mild_oneoff LUSC_13_T;chainID=8 2 165815016 165815274 2 165846473 165846705 6398035 10 - + 0 0 1 1 150 107 1 0 1 DUP cancer_singleSample LUSC_13_T 392 617 3 385 226 620 -7 7 32 11 0,245614 mild_oneoff LUSC_13_T;chainID=8 2 166044329 166044589 2 166047743 166048017 6399382 18 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 13 302 302 805 289 812 0 10 24 10 0,37037 simple NA 2 166045811 166046073 2 166052904 166053189 6399396 19 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 409 662 34 402 254 684 -7 9 35 15 0,264706 simple NA 2 166081429 166081608 2 166117875 166118101 6399778 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 166187170 166187323 2 166195042 166195206 6400690 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 82 423 421 656 233 659 2 5 23 16 0,204082 simple NA 2 166187275 166187468 2 166192669 166192853 6400695 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 652 855 0 653 202 855 1 8 18 23 0,280702 simple NA 2 166616882 166616971 2 166625598 166625691 6404000 3 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_7_T 257 479 38 256 219 499 -1 13 9 7 0,619048 simple NA 2 166874561 166874755 2 166877729 166877882 6405791 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 481 1054 17 482 464 1070 1 2 24 19 0,0851064 simple NA 2 166937901 166938136 2 166951665 166951828 6406208 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 146 714 53 147 93 868 1 4 13 14 0,228571 simple NA 2 167649624 167649808 2 167651065 167651302 6412716 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T 606 712 0 606 106 739 0 8 34 20 0,228571 simple NA 2 168229992 168230148 2 168230842 168231046 6417338 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 194 287 44 188 94 296 -6 2 7 15 0,153846 simple NA 2 169046374 169046565 2 169048469 169048671 6423528 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_12_T 0 616 616 680 64 735 0 6 10 13 0,342857 simple NA 2 169502624 169502903 2 169519047 169519307 6427120 9 - + 0 2 1 1 150 140 1 0 1 DUP cancer_singleSample OV_5_T 0 609 607 687 78 730 2 7 31 19 0,21875 simple NA 2 169855915 169856098 2 169856704 169856865 6429736 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 57 235 236 456 179 534 -1 8 16 16 0,333333 simple NA 2 170399781 170399902 2 170402309 170402442 6433639 4 + - 0 0 1 1 102 150 1 0 1 DEL cancer_singleSample BRCA_1_T 174 740 738 1064 324 1081 2 4 15 16 0,205128 simple NA 2 170578579 170578712 2 170585893 170586048 6434705 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 0 436 445 1070 437 1074 -9 7 0 26 0,35 simple NA 2 170655803 170655988 2 202125711 202125899 6435006 7 + - 0 0 1 1 135 148 1 0 1 INTRA cancer_singleSample LUAD_1_T 37 239 238 791 201 793 1 4 16 20 0,181818 mild_oneoff LUAD_1_T;chainID=3 2 170786393 170786611 2 202131323 202131565 6435652 9 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_1_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUAD_1_T;chainID=3 2 173595716 173595915 2 192815338 192815598 6453880 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 173639384 173639618 2 192818044 192818291 6454124 6 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 174225344 174225573 2 174229818 174229992 6457684 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 175269026 175269200 2 183295616 183295738 6464612 3 + + 1 2 1 1 150 58 1 0 1 INTRA cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 175557286 175557498 2 175605383 175605566 6466382 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 131 332 15 134 116 340 3 6 9 10 0,387097 simple NA 2 176319638 176319827 2 176345297 176345490 6472045 5 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_8_T 12 302 301 655 289 655 1 11 9 10 0,536585 simple NA 2 176671913 176672058 2 176674363 176674511 6475021 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 176969956 176970132 2 176976099 176976362 6477135 3 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 22 607 606 1172 565 1208 1 3 4 11 0,285714 simple NA 2 178079466 178079700 2 178082106 178082355 6484312 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 20 560 571 1013 443 1013 -11 12 12 21 0,421053 simple NA 2 178094576 178094776 2 178110140 178110354 6484382 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 13 159 160 573 147 592 -1 8 30 18 0,25 simple NA 2 178114785 178115028 2 178339292 178339577 6484510 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T 40 465 462 1072 422 1072 3 16 12 7 0,627451 simple NA 2 178999980 179000244 2 179006766 179007042 6491296 13 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 0 608 606 1021 413 1051 2 12 24 14 0,387097 simple NA 2 179656944 179657092 2 179671298 179671409 6496805 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 181110227 181110382 2 181133526 181133707 6507999 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 5 159 156 333 151 370 3 8 16 15 0,340426 simple NA 2 181771567 181771827 2 181779814 181780094 6514284 17 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 156 351 37 156 119 354 0 13 20 13 0,440678 simple NA 2 181807163 181807459 2 181813018 181813295 6514600 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T 0 609 611 787 177 787 -2 5 21 25 0,178571 simple NA 2 182285901 182286193 2 182290274 182290547 6518770 17 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 15 208 211 367 157 393 -3 12 15 5 0,545455 simple NA 2 182764983 182765223 2 183989658 183989918 6522929 7 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 17 476 474 611 135 629 2 10 32 25 0,25974 simple NA 2 183782795 183782992 2 183795323 183795496 6531094 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 184788574 184788714 2 184789766 184789919 6539646 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 278 945 8 278 270 945 0 8 8 13 0,432432 simple NA 2 185660815 185660982 2 185662729 185662911 6548374 4 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 195 755 754 847 92 851 1 NA NA NA NA simple NA 2 186020904 186021161 2 186021704 186021928 6551901 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 186793248 186793455 2 186798128 186798339 6558735 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 187206023 187206242 2 187214542 187214775 6562898 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 3 190 192 803 188 803 -2 9 32 28 0,230769 simple NA 2 187508373 187508648 2 187687279 187687530 6565030 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_8_T 564 688 32 545 125 706 -19 8 29 33 0,205128 simple NA 2 187667786 187667983 2 187679791 187680829 6566060 4 - - 0 0 1 1 150 126 1 0 1 INV cancer_singleSample BRCA_3_T 161 498 55 187 106 563 26 0 16 45 0 simple NA 2 187802352 187802521 2 187816314 187816489 6567159 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 616 913 0 618 295 932 2 5 29 17 0,178571 simple NA 2 190911956 190912179 2 190913699 190913951 6591427 18 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 635 832 0 638 194 848 3 15 3 3 0,833333 simple NA 2 191628113 191628330 2 191629282 191629486 6596482 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 191830163 191830329 2 191866098 191866262 6597849 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 37 607 609 699 91 711 -2 7 8 6 0,5 simple NA 2 192165694 192165815 2 192183838 192183998 6600152 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 668 805 0 669 136 808 1 9 22 13 0,339623 simple NA 2 192259610 192259794 2 192266966 192267156 6600730 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 46 177 176 778 130 778 1 2 9 10 0,173913 simple NA 2 193113561 193113787 2 193283560 193283837 6607099 10 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T 383 968 3 382 380 976 -1 10 10 9 0,512821 simple NA 2 193638615 193638815 2 193641704 193641964 6611372 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 45 314 312 495 181 515 2 6 26 10 0,25 simple NA 2 193959214 193959519 2 194391699 194391963 6614078 16 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 194608089 194608333 2 194617798 194618190 6619527 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 196465341 196465422 2 196506652 196506736 6634618 3 + - 0 1 1 1 112 150 1 0 1 DEL cancer_singleSample OV_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 196717140 196717384 2 197574132 197574368 6636374 9 + + 0 0 1 1 150 142 1 0 1 INV cancer_singleSample LUSC_11_T 325 916 22 325 303 916 0 6 17 17 0,26087 simple NA 2 197835225 197835416 2 197870125 197870380 6644399 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 198685542 198685942 2 198696902 198697473 6649736 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 200178944 200179070 2 200193260 200193484 6663169 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 503 649 20 502 147 711 -1 3 15 6 0,222222 simple NA 2 201341700 201341951 2 202135719 202136013 6671247 7 - - 0 0 1 1 136 150 1 0 1 INV cancer_singleSample LUAD_1_T 582 803 163 584 219 814 2 5 16 15 0,243902 mild_oneoff LUAD_1_T;chainID=3 2 202241530 202241662 2 242512962 242513215 6676307 6 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 202538069 202538224 2 202560923 202561180 6677728 10 - + 0 0 1 1 146 150 1 0 1 DUP cancer_singleSample OV_10_T 171 644 17 171 154 674 0 7 13 18 0,311111 simple NA 2 206131333 206131523 2 206179197 206179430 6699382 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 206452080 206452278 2 207189599 207189844 6701860 8 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 206543086 206543340 2 206559493 206559773 6702661 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 1 129 132 481 129 491 -3 3 26 27 0,101695 simple NA 2 206571282 206571464 2 231794941 231795152 6702739 7 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_6_T 0 610 610 891 281 919 0 7 6 7 0,518519 simple NA 2 210081274 210081498 2 210093840 210094966 6724637 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 210201495 210201692 2 210204832 210204936 6725621 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 28 398 401 891 371 895 -3 3 5 8 0,315789 simple NA 2 210484678 210484940 2 210485740 210485996 6727546 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 605 613 905 293 937 -8 4 14 8 0,266667 simple NA 2 211386644 211386933 2 211389723 211389987 6733947 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 42 487 484 752 265 754 3 7 10 12 0,388889 simple NA 2 211909460 211909609 2 211910680 211910831 6738133 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 212984804 212985019 2 212997368 212997607 6745917 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 213071474 213071626 2 213154716 213154861 6746589 4 + - 0 0 1 1 65 150 1 0 1 DEL cancer_singleSample READ_1_T 642 930 0 635 289 953 -7 2 14 22 0,1 simple NA 2 213925816 213925933 2 214049196 214049382 6752955 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 569 1150 0 573 569 1150 4 7 2 10 0,538462 simple NA 2 214877034 214877162 2 215070324 215070440 6759316 3 + - 1 1 1 1 104 150 1 0 1 DEL cancer_singleSample OV_10_T 1 427 426 866 425 894 1 8 7 1 0,666667 simple NA 2 217270063 217270196 2 217271244 217271479 6776328 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T 356 876 58 357 298 897 1 2 13 16 0,121212 simple NA 2 217650525 217650778 2 217654167 217654400 6778343 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 615 1028 0 621 407 1028 6 6 14 8 0,352941 simple NA 2 217661480 217661629 2 241224917 241225085 6778397 5 - + 1 2 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_10_T 16 336 333 570 234 570 3 3 17 8 0,193548 simple NA 2 220254704 220254948 2 220445552 220445747 6793807 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 451 613 2 451 162 613 0 4 16 21 0,177778 simple NA 2 223021151 223021388 2 223024298 223024487 6815188 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 223511391 223511523 2 223678032 223678177 6818586 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_10_T 278 833 34 280 244 833 2 10 27 19 0,30303 simple NA 2 223571677 223571940 2 223683229 223683501 6818880 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 224466144 224466374 2 224469060 224469274 6825827 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 0 651 648 1257 606 1257 3 2 18 28 0,08 simple NA 2 225530080 225530377 2 225557819 225558063 6833449 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 657 993 0 659 334 1016 2 8 20 17 0,301887 simple NA 2 226277526 226277701 2 226282804 226282969 6839249 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 647 1042 55 649 393 1066 2 9 12 10 0,45 simple NA 2 228611725 228611878 2 228616759 228616972 6857734 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 418 941 3 420 415 941 2 3 25 19 0,12 simple NA 2 229277608 229277924 2 229359550 229359832 6862620 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_2_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_2_T;chainID=1 2 229368948 229369234 2 229377355 229377573 6863533 9 - + 0 2 1 1 134 98 1 0 1 DUP cancer_singleSample OV_4_T 608 1216 0 609 607 1216 1 2 23 8 0,114286 simple NA 2 229377892 229378177 2 229483136 229483433 6863608 15 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_2_T 606 802 0 611 191 821 5 16 12 10 0,592593 mild_oneoff GBM_2_T;chainID=1 2 229378275 229378559 2 229491066 229491325 6863612 18 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_2_T 170 373 373 497 124 534 0 6 11 20 0,27907 mild_oneoff GBM_2_T;chainID=1 2 231285226 231285417 2 231756993 231757266 6878340 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_9_T 531 721 0 533 188 760 2 4 13 29 0,16 simple NA 2 231553266 231554485 2 231562554 231563275 6880335 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 232083528 232083702 2 232090424 232090599 6882709 7 - + 0 0 1 1 132 150 1 0 1 DUP cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 232548294 232548537 2 232552782 232552983 6884344 11 + - 0 0 1 1 145 138 1 0 1 DEL cancer_singleSample GBM_7_T 527 820 0 528 292 827 1 7 4 7 0,56 simple NA 2 232930711 232930953 2 232938968 232939225 6887548 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 232990373 232990583 2 232992829 232993022 6888155 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_16_T 608 983 76 608 375 1034 0 11 14 7 0,511628 simple NA 2 233559973 233560180 2 237139314 237139532 6890953 6 - - 0 0 1 1 129 150 1 0 1 INTRA cancer_singleSample BRCA_9_T 559 641 428 560 81 641 1 NA NA NA NA simple NA 2 233584661 233584814 2 237166761 237166918 6891066 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_9_T 10 226 225 685 215 692 1 8 15 20 0,313725 simple NA 2 233762822 233763063 2 233783593 233783811 6892080 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T 0 605 609 1012 404 1029 -4 9 8 22 0,375 simple NA 2 234195427 234195536 2 239518293 239518478 6893729 8 + + 0 0 1 1 86 122 1 0 1 INTRA cancer_singleSample OV_7_T 307 610 42 306 265 623 -1 10 19 13 0,384615 simple NA 2 234805219 234805476 2 234807597 234807841 6896613 11 + - 0 0 1 1 138 147 1 0 1 DEL cancer_singleSample OV_10_T 156 449 3 157 153 478 1 4 12 13 0,242424 simple NA 2 234822709 234822972 2 234888188 234888434 6896825 16 - + 0 0 1 1 150 144 1 0 1 DUP cancer_singleSample OV_10_T 585 670 0 587 83 701 2 7 25 22 0,229508 simple NA 2 235234610 235234793 2 235243293 235243472 6898962 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 9 77 74 329 65 574 3 6 13 23 0,25 simple NA 2 235417532 235417750 2 235829740 235829945 6900099 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 236564636 236564756 2 236575027 236575244 6905658 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 236682752 236682955 2 237123993 237124171 6905953 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 0 648 646 883 235 898 2 4 7 7 0,363636 simple NA 2 236898684 236898950 2 237125140 237125390 6906635 9 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_5_T 2 402 402 756 354 771 0 4 3 10 0,380952 simple NA 2 237630217 237630487 2 237636288 237636504 6909180 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 298 932 38 284 247 932 -14 5 13 0 0,434783 simple NA 2 237668142 237668222 2 238463875 238464119 6909332 3 - - 0 0 1 1 150 126 1 0 1 INV cancer_singleSample OV_7_T 243 529 2 245 241 573 2 8 10 11 0,432432 mild_oneoff OV_7_T;chainID=1 2 237695364 237695487 2 239264300 239264496 6909449 4 + - 1 0 1 1 129 150 1 0 1 INTRA cancer_singleSample OV_7_T 589 739 0 588 151 763 -1 4 14 7 0,275862 mild_oneoff OV_7_T;chainID=1 2 237750834 237750979 2 238148464 238148697 6909604 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 444 749 20 447 302 775 3 5 12 13 0,285714 simple NA 2 238635529 238635720 2 239337882 239338074 6913035 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_7_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_7_T;chainID=1 2 238788057 238788244 2 238841910 238842120 6913753 5 + + 0 0 1 1 132 150 1 0 1 INV cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 2 240770198 240770322 2 242201572 242201745 6919104 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_3_T 312 470 79 314 156 529 2 9 34 27 0,227848 simple NA 3 2753116 2753304 7 28073962 28074122 9375836 3 - + 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 4541543 4541708 3 5240371 5240572 8932158 5 - + 0 0 1 1 150 136 1 0 1 DUP cancer_singleSample LUAD_5_T 0 607 606 920 313 921 1 6 16 14 0,285714 simple NA 3 4717755 4717937 3 4818634 4818830 8941057 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 629 781 25 626 153 782 -3 5 14 28 0,192308 simple NA 3 7889198 7889354 3 7890107 7890296 9149028 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 8017110 8017247 3 8032639 8032820 9159085 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 8892841 8893073 3 9797809 9798032 9230634 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_2_T 609 1051 0 610 441 1051 1 16 27 19 0,410256 simple NA 3 8909143 8909422 3 9711503 9711755 9232562 14 - + 1 2 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 609 918 0 609 309 933 0 10 18 26 0,3125 simple NA 3 8915484 8915698 3 8937139 8937374 9233187 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 111 480 7 113 104 481 2 7 15 17 0,304348 simple NA 3 9256330 9256602 8 124262670 124262918 9396498 11 - - 0 0 1 1 150 144 1 0 1 INTER cancer_singleSample OV_5_T 0 607 609 869 261 879 -2 3 30 22 0,103448 simple NA 3 9861338 9861540 3 9865612 9865848 9297255 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 9998005 9998158 3 10003215 10003364 9309777 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 10339211 10339312 3 11637448 11637593 7905754 4 - - 0 0 1 1 36 150 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 10550212 10550428 3 78373646 78373885 7924340 6 + - 0 0 1 1 150 57 1 0 1 INTRA cancer_singleSample BRCA_1_T 12 525 522 761 236 770 3 13 17 18 0,42623 simple NA 3 10866010 10866144 3 10871567 10871758 7949112 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 6 679 678 1003 324 1003 1 2 29 23 0,0714286 simple NA 3 10923132 10923304 3 11241594 11241835 7953072 10 - + 1 0 1 1 126 144 1 0 1 DUP cancer_singleSample OV_10_T 601 701 0 601 100 734 0 10 4 11 0,571429 simple NA 3 10991661 10991768 3 10992407 10992549 7959459 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_18_T 407 1012 28 403 376 1013 -4 9 9 10 0,486486 simple NA 3 12885444 12885620 3 12962601 12962880 8097054 9 - + 0 0 1 1 137 150 1 0 1 DUP cancer_singleSample OV_3_T 47 241 241 700 194 702 0 4 17 13 0,210526 simple NA 3 15403663 15403814 4 70176228 70176454 9315014 3 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 134 615 613 828 213 893 2 1 5 14 0,0952381 simple NA 3 15403903 15404132 4 70176118 70176357 9315015 5 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 72 277 276 476 199 818 1 2 9 10 0,173913 simple NA 3 16522247 16522464 3 16533021 16533289 8394099 12 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 31 375 372 765 341 771 3 1 21 17 0,05 simple NA 3 16729648 16729750 Y 21216904 21216982 2443954 3 + + 1 1 1 1 150 31 1 0 1 INTER cancer_singleSample GBM_8_T 0 243 220 396 153 482 23 0 10 8 0 simple NA 3 18522615 18522866 3 77008607 77008901 8595204 10 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 0 512 522 642 121 680 -10 5 21 5 0,277778 simple NA 3 20225690 20225792 3 20721389 20721516 8724837 4 + - 0 0 1 1 146 146 1 0 1 DEL cancer_singleSample OV_3_T 0 628 626 1287 626 1287 2 1 7 9 0,111111 simple NA 3 20269912 20270082 3 20277202 20277451 8725206 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 307 497 24 301 191 526 -6 1 31 26 0,0338983 simple NA 3 20640494 20640655 3 20650892 20651622 8728183 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 23666720 23666913 3 23826568 23826746 8756162 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 263 318 53 263 55 318 0 NA NA NA NA simple NA 3 24794120 24794317 3 27073630 27073829 8764258 8 + + 0 3 1 1 150 147 1 0 1 INTRA cancer_singleSample OV_1_T 632 841 0 611 210 877 -21 8 8 12 0,444444 simple NA 3 24930318 24930500 8 81113842 81114100 9389137 4 - - 2 5 1 1 150 54 1 0 1 INTER cancer_singleSample OV_1_T 506 672 0 507 165 712 1 4 15 5 0,285714 simple NA 3 25407632 25407829 3 25569738 25569954 8769815 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_11_T 67 147 144 656 77 711 3 3 15 16 0,162162 simple NA 3 26286724 26286845 3 26289248 26289497 8778820 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 7 121 120 629 113 640 1 8 19 16 0,313725 simple NA 3 26402393 26402536 3 26827721 26827844 8780107 6 - - 0 1 1 1 150 34 1 0 1 INV cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 27317976 27318175 3 27330651 27330837 8789646 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 27572281 27572460 3 27573018 27573219 8791380 3 + - 0 0 1 1 150 95 1 0 1 DEL cancer_singleSample BRCA_5_T 616 930 0 614 315 957 -2 8 10 10 0,444444 simple NA 3 27948566 27948755 3 27949744 27949911 8794581 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 624 1113 0 628 485 1136 4 5 12 12 0,294118 simple NA 3 31398352 31398601 3 31402489 31402661 8827174 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 0 610 609 1054 444 1067 1 3 18 15 0,153846 simple NA 3 31598097 31598286 3 31640333 31640529 8828780 3 + - 0 0 1 1 150 115 1 0 1 DEL cancer_singleSample BRCA_5_T 65 259 255 511 190 1262 4 4 14 4 0,307692 simple NA 3 32042210 32042467 3 32199218 32199467 8831551 10 - + 1 2 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 528 836 1 530 306 840 2 12 29 24 0,311688 simple NA 3 33433176 33433385 3 33462066 33462192 8841185 5 + - 0 0 1 1 150 136 1 0 1 DEL cancer_singleSample BRCA_11_T 0 628 620 784 156 797 8 3 11 6 0,26087 simple NA 3 34768618 34768904 3 36005627 36005915 8853478 22 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 0 609 607 918 309 948 2 17 10 6 0,68 simple NA 3 35418443 35418693 3 35420798 35421015 8860122 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 611 1008 0 612 396 1112 1 8 18 17 0,313725 simple NA 3 35508047 35508157 3 35509514 35509626 8861072 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 780 947 688 781 92 951 1 9 18 19 0,327273 simple NA 3 37773368 37773519 3 37829224 37829393 8881284 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 681 857 0 683 174 934 2 7 12 6 0,4375 simple NA 3 39910358 39910525 3 39924631 39924846 8896748 5 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_6_T 581 1165 0 581 581 1165 0 7 2 10 0,538462 simple NA 3 40663725 40664038 3 40674382 40674606 8902611 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 40740343 40740480 3 40776161 40776292 8903510 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_3_T 44 463 460 780 317 823 3 10 17 17 0,37037 simple NA 3 40871585 40871842 3 40880158 40880420 8904890 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 536 1150 4 540 532 1150 4 12 24 21 0,347826 simple NA 3 41417625 41417843 3 61405679 61405874 8908886 5 + - 0 0 1 1 118 150 1 0 1 INTRA cancer_singleSample BRCA_7_T 326 476 474 658 148 667 2 4 10 13 0,258065 simple NA 3 41544835 41545107 3 41546360 41546616 8910049 12 + - 2 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 41701002 41701196 3 41811014 41811222 8911168 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 42440043 42440367 3 42446795 42447044 8915595 10 + - 0 2 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 4 607 602 1096 489 1110 5 6 4 22 0,315789 simple NA 3 42452235 42452507 3 42454057 42454185 8915673 5 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 45619796 45620051 3 45626615 45626845 8933295 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_2_T 19 242 241 524 222 569 1 6 23 23 0,206897 simple NA 3 46168058 46168484 3 46177321 46178214 8936343 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T 264 515 49 274 215 547 10 1 24 20 0,0434783 simple NA 3 46631748 46631988 3 46640219 46640444 8939129 22 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 20 415 417 1006 396 1139 -2 4 20 18 0,173913 simple NA 3 47233651 47233938 3 47257174 47257381 8941417 6 - + 0 0 1 1 150 127 1 0 1 DUP cancer_singleSample GBM_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 47275964 47276041 3 47276374 47276480 8941761 3 + - 0 0 1 1 71 150 1 0 1 DEL cancer_singleSample OV_10_T 193 570 0 349 193 594 156 18 5 13 0,666667 simple NA 3 47486190 47486560 3 47497500 47498309 8942579 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 47894484 47894726 3 47895296 47895419 8944600 5 + - 0 0 1 1 136 142 1 0 1 DEL cancer_singleSample OV_10_T 582 868 0 585 283 892 3 3 4 7 0,352941 simple NA 3 48152866 48153159 3 48968161 48968409 8945853 11 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 0 349 346 837 346 854 3 5 23 22 0,181818 simple NA 3 49019722 49019904 3 49026700 49026880 8949566 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 614 844 0 614 230 847 0 8 5 3 0,666667 simple NA 3 49138239 49138453 3 49216470 49216572 8949978 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_7_T 421 709 38 425 284 738 4 6 15 20 0,255319 simple NA 3 49155131 49155298 3 49422496 49422710 8950019 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_16_T 624 729 0 621 106 731 -3 1 15 9 0,0769231 simple NA 3 50055328 50055588 3 50819940 50820202 8953454 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_2_T 2 139 142 541 138 548 -3 3 30 13 0,122449 simple NA 3 50637810 50638083 3 50842566 50842836 8954757 6 + - 4 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 0 571 570 1101 530 1109 1 2 1 10 0,266667 simple NA 3 51735251 51735407 3 51765833 51765980 8961141 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_3_T 616 824 0 615 209 824 -1 3 18 2 0,230769 simple NA 3 52025819 52026008 3 52030460 52030718 8962426 8 + - 0 0 1 1 150 98 1 0 1 DEL cancer_singleSample OV_6_T 400 605 29 403 202 701 3 3 10 4 0,3 simple NA 3 52612773 52612982 3 52692186 52692392 8963731 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 21 264 261 535 240 591 3 6 6 7 0,48 simple NA 3 52783742 52783963 3 52812351 52812630 8964626 5 - + 0 0 1 1 129 150 1 0 1 DUP cancer_singleSample LUAD_5_T 0 626 628 867 240 893 -2 1 11 29 0,047619 simple NA 3 54870581 54870819 3 54918046 54918288 8975471 5 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 55486859 55486971 3 55489549 55489705 8980166 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 94 660 657 839 179 839 3 6 15 9 0,333333 simple NA 3 55556147 55556271 3 55560315 55560599 8980545 7 - + 0 0 1 1 142 144 1 0 1 DUP cancer_singleSample OV_10_T 0 412 412 519 107 532 0 10 12 16 0,416667 simple NA 3 55731013 55731228 3 55968501 55968715 8981576 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_17_T 551 1018 77 554 464 1100 3 6 20 20 0,230769 mild_oneoff GBM_17_T;chainID=2 3 55744545 55744686 3 55755165 55755308 8981715 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 56289065 56289350 3 56290706 56290984 8985712 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 1166 1781 1092 1168 74 1781 2 7 3 3 0,7 simple NA 3 56330516 56330650 3 56445101 56445307 8985928 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 56368546 56368695 3 56371863 56372097 8986162 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 602 1032 0 604 428 1039 2 11 11 13 0,478261 simple NA 3 56840591 56840842 3 57226897 57227150 8988569 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 3 491 487 763 272 820 4 16 21 12 0,492308 simple NA 3 56892436 56892605 3 56905430 56905592 8988980 6 - - 4 1 1 1 150 150 1 0 1 INV cancer_singleSample OV_5_T 0 698 693 752 54 841 5 4 22 12 0,190476 simple NA 3 58180159 58180361 3 58702460 58702729 8996070 12 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 59702219 59702397 3 59864367 59864573 9006202 9 + - 0 0 1 1 46 150 1 0 1 DEL cancer_singleSample OV_6_T 52 367 364 946 312 946 3 6 61 9 0,146341 simple NA 3 59886870 59887081 3 59958893 59959069 9008082 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T 226 834 0 224 225 834 -2 8 2 18 0,444444 simple NA 3 60009834 60009999 3 60174480 60174642 9009271 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T 634 1005 0 635 370 1009 1 2 22 14 0,1 mild_stepwise COAD_1_T;chainID=2 3 60067795 60067974 3 60076102 60076309 9009761 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T 607 788 0 613 175 792 6 7 12 8 0,411765 mild_stepwise COAD_1_T;chainID=2 3 60246396 60246538 3 60510688 60510817 9011218 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise COAD_1_T;chainID=2 3 60283678 60283814 3 60449368 60449482 9011495 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 60317005 60317152 3 82339770 82339878 9011758 3 - + 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_2_T 409 577 7 410 167 599 1 4 19 16 0,186047 simple NA 3 60335087 60335302 3 60423401 60423651 9011867 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T 600 1202 0 603 599 1206 3 10 2 3 0,8 mild_stepwise COAD_1_T;chainID=2 3 60424798 60424924 3 60494986 60495132 9012482 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T 650 1272 0 652 620 1272 2 12 2 3 0,827586 mild_stepwise COAD_1_T;chainID=2 3 60528607 60528796 3 61137597 61137767 9013302 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T 0 624 619 1231 607 1231 5 6 6 11 0,413793 simple NA 3 60619732 60619892 3 60658637 60658840 9014092 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 60656227 60656428 3 60663671 60663873 9014473 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 608 605 1251 605 1251 3 7 12 13 0,358974 simple NA 3 60884885 60885015 6 111155001 111155183 9365359 3 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T 8 167 166 416 158 538 1 5 9 20 0,25641 simple NA 3 64227957 64228213 3 64233098 64233399 9041005 28 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 601 780 24 598 180 781 -3 22 23 25 0,478261 simple NA 3 64285629 64285831 3 64374906 64375150 9041431 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 7 303 319 929 297 929 -16 11 15 17 0,407407 simple NA 3 64956732 64956968 3 64957607 64957900 9046813 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 290 895 71 296 219 895 6 5 7 4 0,47619 simple NA 3 65870489 65870675 3 65916228 65916438 9053524 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_8_T 5 364 362 492 128 503 2 8 17 21 0,296296 simple NA 3 67245592 67245821 3 67248553 67248776 9062092 5 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 595 1034 21 598 436 1052 3 1 15 30 0,0425532 simple NA 3 69118990 69119225 6 107980186 107980378 9366491 4 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 673 768 0 673 95 784 0 3 9 26 0,146341 simple NA 3 69186829 69186950 3 81818027 81818142 9077693 3 + + 0 1 1 1 150 81 1 0 1 INTRA cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 69247780 69248057 3 95576616 95576901 9078097 24 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 34 163 163 665 129 665 0 18 12 37 0,423529 simple NA 3 69250650 69250889 3 69260210 69260450 9078100 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 617 616 1235 616 1235 1 6 3 11 0,461538 simple NA 3 71351668 71351937 3 71615335 71615624 9094296 19 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 73806952 73807077 3 73823547 73823678 9109914 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 46 448 446 578 130 760 2 4 10 6 0,333333 simple NA 3 74361756 74361872 7 91330820 91330918 9383780 3 - + 1 0 1 1 150 83 1 0 1 INTER cancer_singleSample GBM_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 76192603 76192834 3 76199784 76200003 9128296 11 + - 0 0 1 1 150 143 1 0 1 DEL cancer_singleSample OV_10_T 584 778 0 586 192 793 2 4 5 6 0,421053 simple NA 3 80590622 80590880 8 87947232 87947310 9395662 5 + + 0 3 1 1 150 43 1 0 1 INTER cancer_singleSample OV_3_T 530 615 0 570 45 615 40 NA NA NA NA simple NA 3 81642346 81642550 3 81709395 81709628 9171945 3 + - 2 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 385 753 0 387 366 852 2 3 12 16 0,176471 simple NA 3 81737747 81737949 3 81742473 81742637 9172631 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 8 258 255 420 162 560 3 6 13 17 0,285714 simple NA 3 83021587 83021873 3 83059006 83059225 9182964 7 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 0 639 637 1265 626 1265 2 7 16 16 0,304348 simple NA 3 84403901 84404166 3 86481935 86482201 9195911 14 - - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 203 822 15 208 188 822 5 13 7 21 0,481481 simple NA 3 84479537 84479800 3 84480491 84480752 9196766 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 606 607 890 284 890 -1 6 14 14 0,3 simple NA 3 84990369 84990652 3 84991680 84991957 9201028 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 108 709 710 788 79 799 -1 NA NA NA NA simple NA 3 85935697 85935967 3 111141090 111141375 9206859 19 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 344 951 0 345 344 951 1 12 10 21 0,436364 simple NA 3 86028907 86029170 3 86030649 86030909 9207664 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 51 459 457 725 266 725 2 14 6 5 0,717949 simple NA 3 87352329 87352595 9 94321375 94321598 9406687 10 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T 38 347 347 956 309 956 0 9 15 28 0,295082 simple NA 3 87352528 87352784 9 94321372 94321606 9406688 14 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T 0 609 609 726 117 788 0 8 27 23 0,242424 simple NA 3 87880407 87880588 3 87881515 87881623 9221371 3 + - 0 1 1 1 117 82 1 0 1 DEL cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 88257897 88258117 3 96478430 96478594 9224274 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 88258902 88259202 3 96477375 96477660 9224278 26 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 606 773 0 611 162 773 5 22 24 41 0,40367 simple NA 3 88987965 88988194 3 89849235 89849475 9231453 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 197 408 13 202 184 408 5 5 29 31 0,142857 simple NA 3 89155139 89155364 3 137985989 137986201 9233183 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_9_T 487 669 362 488 125 729 1 8 25 23 0,25 simple NA 3 89962639 89962898 3 146536796 146537145 9240874 15 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 15 263 261 709 246 710 2 16 8 11 0,627451 simple NA 3 93529236 93529320 3 97741289 97741439 9251697 3 + - 0 0 1 1 111 150 1 0 1 INTRA cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_8_T;chainID=2 3 93844011 93844298 3 109171071 109171182 9253848 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 94261103 94261172 3 104686427 104686598 9257819 3 + - 0 0 1 1 139 134 1 0 1 INTRA cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 94337749 94338008 3 97680585 97680881 9258658 28 - + 0 0 1 1 146 150 1 0 1 INTRA cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 95834660 95834934 3 95873828 95874079 9272022 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 16 336 335 451 115 460 1 5 18 23 0,196078 simple NA 3 96188815 96189005 3 96191134 96191310 9275182 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 96334529 96334708 3 97627223 97627408 9276597 4 - - 0 0 1 1 150 62 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 3 96346031 96346297 3 104982620 104982846 9276662 5 + + 1 0 1 1 99 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 37 374 373 961 336 973 1 8 7 21 0,363636 extreme_stepwise LUSC_11_T;chainID=1 3 96346332 96346575 3 98390735 98390995 9276666 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 593 587 912 319 936 6 7 7 26 0,297872 extreme_stepwise LUSC_11_T;chainID=1 3 96456884 96457076 3 164551259 164551539 9277574 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 96754624 96754737 3 108763485 108763696 9279796 7 + - 0 0 1 1 150 141 1 0 1 INTRA cancer_singleSample GBM_8_T 300 762 5 300 295 770 0 4 7 8 0,347826 extreme_oneoff GBM_8_T;chainID=2 3 96838818 96838990 3 132789533 132789669 9280762 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 0 615 613 724 109 758 2 2 6 16 0,153846 extreme_oneoff GBM_8_T;chainID=2 3 96961386 96961611 3 109765516 109765716 9282228 10 - - 0 0 1 1 132 150 1 0 1 INTRA cancer_singleSample OV_3_T 0 588 585 779 191 781 3 2 4 21 0,137931 simple NA 3 97003408 97003624 3 97005297 97005560 9282511 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_1_T 0 610 606 936 326 942 4 10 25 30 0,266667 simple NA 3 97057561 97057690 3 172383538 172383715 9283153 4 + + 0 0 1 1 142 109 1 0 1 INTRA cancer_singleSample GBM_8_T 0 417 417 644 227 648 0 2 14 10 0,142857 extreme_oneoff GBM_8_T;chainID=2 3 97087690 97087814 3 109711051 109711154 9283534 5 + + 0 0 1 1 150 145 1 0 1 INTRA cancer_singleSample OV_3_T 35 205 205 857 170 857 0 5 5 22 0,27027 simple NA 3 97678342 97678493 3 97695874 97696038 9288833 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 459 1069 216 464 243 1069 5 1 14 20 0,0555556 simple NA 3 97765003 97765168 3 112821447 112821590 9289406 6 + + 0 0 1 1 150 130 1 0 1 INTRA cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_8_T;chainID=2 3 97885762 97885965 3 97890200 97890403 9291145 7 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 98209306 98209435 3 100685094 100685254 9294388 5 + + 0 0 1 1 150 137 1 0 1 INTRA cancer_singleSample GBM_8_T 7 130 127 237 107 237 3 5 5 18 0,30303 extreme_oneoff GBM_8_T;chainID=2 3 98337248 98337391 3 98338367 98338485 9295129 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 98497252 98497446 3 99006859 99007020 9296264 13 + - 1 0 1 1 140 148 1 0 1 DEL cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 98659494 98659722 3 101424584 101424795 9297573 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 98744889 98745026 3 102483425 102483555 9298298 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 633 1011 0 634 377 1011 1 0 9 8 0 simple NA 3 98968643 98968781 3 158753928 158754113 9300886 6 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 99875472 99875531 4 111624617 111624700 9333428 3 + - 2 1 1 1 35 150 1 0 1 INTER cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 100535064 100535340 3 145994699 145994952 7880408 12 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_1_T 625 1153 0 622 529 1155 -3 11 16 12 0,44 mild_stepwise OV_1_T;chainID=2 3 100553088 100553373 3 100584046 100584316 7880592 15 - - 0 1 1 1 150 150 1 0 1 INV cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_1_T;chainID=2 3 100555231 100555482 3 150102530 150102760 7880613 8 - - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_1_T;chainID=2 3 100581357 100581648 3 100588276 100588525 7880836 30 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 77 74 630 74 651 3 8 21 21 0,275862 mild_oneoff LUSC_13_T;chainID=6 3 100607201 100607342 3 167133105 167133210 7881059 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 17 323 317 538 215 555 6 5 17 8 0,285714 extreme_oneoff GBM_8_T;chainID=2 3 100996944 100997194 3 100999047 100999248 7884882 5 + - 0 0 1 1 125 150 1 0 1 DEL cancer_singleSample LUSC_13_T 90 483 484 1081 394 1081 -1 2 14 21 0,102564 simple NA 3 101017167 101017439 3 119629020 119629258 7885086 6 - - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 619 615 1040 421 1075 4 8 17 32 0,246154 simple NA 3 101142436 101142663 3 101549672 101549879 7886015 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 21 466 466 687 221 902 0 8 23 29 0,235294 simple NA 3 101520977 101521226 3 101521787 101522040 7888593 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T 309 625 0 384 241 677 75 4 14 8 0,266667 simple NA 3 102443442 102443628 3 110444308 110444480 7897070 12 + - 0 0 1 1 122 150 1 0 1 INTRA cancer_singleSample GBM_8_T 593 1099 0 593 506 1099 0 2 9 8 0,190476 simple NA 3 102932911 102933177 3 102936018 102936251 7901975 5 + - 0 0 1 1 130 150 1 0 1 DEL cancer_singleSample BRCA_8_T 351 612 55 353 259 612 2 7 8 12 0,411765 simple NA 3 103006204 103006343 3 133347968 133348098 7902466 6 + - 0 0 1 1 150 129 1 0 1 INTRA cancer_singleSample GBM_8_T 275 428 0 275 153 440 0 6 11 8 0,387097 extreme_oneoff GBM_8_T;chainID=2 3 103007764 103007904 3 103145282 103145433 7902478 5 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_8_T 13 388 386 889 373 912 2 4 3 8 0,421053 extreme_oneoff GBM_8_T;chainID=2 3 103108530 103108732 3 172813916 172814064 7903383 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 0 595 599 1187 589 1188 -4 1 5 2 0,222222 extreme_oneoff GBM_8_T;chainID=2 3 103155150 103155338 3 131788503 131788680 7903697 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_1_T 615 1202 0 616 586 1202 1 10 15 27 0,322581 simple NA 3 103762015 103762272 4 170203144 170203345 9310659 38 - + 0 0 1 1 39 149 1 0 1 INTER cancer_singleSample OV_3_T 266 479 62 268 204 483 2 19 21 12 0,535211 simple NA 3 103765038 103765246 4 170203141 170203330 9310660 22 - - 0 0 1 1 149 139 1 0 1 INTER cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 103962782 103962880 3 165419362 165419467 7910846 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 104220524 104220740 3 104222798 104222932 7913657 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 346 748 10 348 336 787 2 1 21 16 0,0512821 simple NA 3 104393474 104393644 3 111962567 111962696 7915524 6 - + 0 0 1 1 150 133 1 0 1 INTRA cancer_singleSample GBM_8_T 280 850 10 282 270 850 2 4 7 6 0,380952 simple NA 3 104405357 104405525 3 182986733 182986922 7915733 8 - + 0 2 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 4 502 498 810 308 828 4 3 26 33 0,0923077 extreme_stepwise LUSC_11_T;chainID=1 3 104556948 104557122 3 107274939 107275113 7917168 7 - - 0 0 1 1 143 150 1 0 1 INTRA cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_8_T;chainID=2 3 104861950 104862213 3 106287117 106287407 7919314 14 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T 11 339 339 779 328 779 0 9 19 31 0,264706 simple NA 3 105028513 105028699 3 132103910 132104053 7920921 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_11_T 0 610 609 890 280 923 1 5 24 14 0,208333 simple NA 3 105163033 105164369 3 105172499 105173268 7921882 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 105190181 105190290 3 163550160 163550254 7922140 3 - - 1 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 0 584 583 975 391 1019 1 3 12 8 0,230769 simple NA 3 105282348 105282485 3 105452442 105452581 7922890 7 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 105891664 105891791 3 105895936 105896080 7926994 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 237 446 9 239 207 456 2 12 2 10 0,666667 simple NA 3 106178639 106178775 3 122743535 122743740 7929613 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 11 592 591 827 235 837 1 6 14 26 0,230769 simple NA 3 106269690 106269801 3 169485207 169485298 7930268 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 421 796 24 423 373 810 2 2 4 6 0,285714 extreme_oneoff GBM_8_T;chainID=2 3 106308916 106309027 3 132540196 132540385 7930626 6 + + 1 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_8_T;chainID=2 3 106689947 106690147 3 107724853 107725039 7933357 18 + - 0 0 1 1 149 149 1 0 1 INTRA cancer_singleSample OV_3_T 49 98 97 442 48 443 1 6 30 23 0,184615 simple NA 3 106691756 106691955 3 107871480 107871714 7933363 5 - + 0 0 1 1 147 150 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 106830690 106830937 3 107391896 107392119 7934595 6 - + 0 0 1 1 137 132 1 0 1 DUP cancer_singleSample GBM_8_T 388 971 32 390 356 971 2 2 7 2 0,307692 extreme_oneoff GBM_8_T;chainID=2 3 106858227 106858485 3 106877263 106877517 7934782 12 + - 0 0 1 1 150 146 1 0 1 DEL cancer_singleSample LUAD_5_T 1 351 347 546 195 572 4 8 20 36 0,222222 simple NA 3 106946254 106946401 3 135022426 135022517 7935670 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 107277316 107277528 3 116491836 116492071 7938214 16 + - 0 0 1 1 143 150 1 0 1 INTRA cancer_singleSample OV_3_T 0 120 119 460 119 497 1 6 30 21 0,190476 mild_stepwise OV_3_T;chainID=4 3 107325443 107325642 3 140285478 140285583 7938602 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 0 579 580 838 259 870 -1 2 12 9 0,16 extreme_oneoff GBM_8_T;chainID=2 3 107423739 107424045 3 107426640 107426918 7939204 37 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 37 504 507 686 180 689 -3 23 27 28 0,455446 simple NA 3 107445894 107446165 3 107957600 107957863 7939380 12 - + 2 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 619 908 0 626 282 931 7 4 26 16 0,16 simple NA 3 107627714 107627917 3 107631756 107631969 7940668 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 580 770 0 582 188 770 2 0 8 15 0 simple NA 3 108604224 108604424 3 133681861 133682006 7948736 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 441 839 8 359 352 867 -82 7 30 8 0,269231 extreme_stepwise LUSC_11_T;chainID=1 3 108614811 108615059 3 149955113 149955324 7948795 10 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 617 662 927 266 930 -45 12 22 23 0,347826 extreme_stepwise LUSC_11_T;chainID=1 3 108641398 108641625 3 169371678 169371892 7948999 7 + + 0 1 1 1 137 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 1 624 622 857 233 887 2 3 29 19 0,111111 extreme_stepwise LUSC_11_T;chainID=1 3 109048260 109048381 3 110568252 110568416 7951747 4 - + 0 0 1 1 34 131 1 0 1 INTRA cancer_singleSample GBM_8_T 24 350 347 523 173 539 3 6 39 7 0,206897 extreme_oneoff GBM_8_T;chainID=2 3 109520543 109520865 3 109521871 109522123 7955862 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 109527297 109527504 3 109545375 109545656 7955899 9 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_10_T 2 211 209 568 207 579 2 10 34 28 0,243902 simple NA 3 109560258 109560375 3 158991840 158992063 7956045 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 584 1049 0 586 463 1058 2 3 5 3 0,428571 extreme_oneoff GBM_8_T;chainID=2 3 109801845 109801980 3 109806302 109806462 7958325 3 - + 0 0 1 1 66 150 1 0 1 DUP cancer_singleSample BRCA_2_T 80 202 221 862 123 886 -19 2 15 0 0,210526 simple NA 3 109805228 109805427 3 109808984 109809230 7958358 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 599 597 1223 597 1223 2 7 20 18 0,269231 simple NA 3 109811707 109811904 3 132478757 132478907 7958466 6 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 51 130 131 717 80 717 -1 2 0 5 0,444444 extreme_oneoff GBM_8_T;chainID=2 3 109958708 109958977 3 177277200 177277344 7959980 5 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise BRCA_1_T;chainID=3 3 109994958 109995169 3 116475972 116476197 7960233 11 - + 0 0 1 1 150 148 1 0 1 INTRA cancer_singleSample OV_3_T 3 488 489 585 97 587 -1 NA NA NA NA mild_stepwise OV_3_T;chainID=4 3 110117257 110117398 3 137874749 137874942 7961280 4 + - 0 0 1 1 150 133 1 0 1 INTRA cancer_singleSample GBM_8_T 3 356 354 552 196 577 2 3 4 8 0,333333 simple NA 3 110566773 110566893 3 110723813 110723916 7965862 6 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_3_T 27 453 451 786 333 807 2 1 19 13 0,0588235 simple NA 3 110577401 110577597 3 167075361 167075509 7966023 9 - - 0 0 1 1 150 128 1 0 1 INTRA cancer_singleSample GBM_8_T 592 704 0 594 110 720 2 3 10 4 0,3 extreme_oneoff GBM_8_T;chainID=2 3 110723974 110724103 3 117737280 117737408 7967141 8 - - 0 0 1 1 150 136 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 111674048 111674278 3 112366472 112366731 7974611 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_1_T 0 601 603 671 69 674 -2 NA NA NA NA simple NA 3 111721859 111722129 3 161668569 161668869 7974884 10 - + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 55 574 575 873 299 893 -1 17 12 22 0,5 simple NA 3 111807299 111807496 3 167090462 167090636 7975447 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 594 834 0 596 238 852 2 2 9 5 0,222222 extreme_oneoff GBM_8_T;chainID=2 3 112824107 112824299 3 113074519 113074602 7983882 5 - - 0 0 1 1 150 130 1 0 1 INV cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_8_T;chainID=2 3 112981775 112981929 3 112994939 112995113 7985119 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 0 471 469 844 373 844 2 3 18 25 0,122449 simple NA 3 113216744 113216852 3 172665201 172665288 7986773 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 159 342 4 160 155 393 1 5 9 8 0,37037 extreme_oneoff GBM_8_T;chainID=2 3 113656957 113657109 3 113674106 113674349 7989563 3 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 114016119 114016247 3 114740357 114740471 7992283 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 630 762 326 632 130 799 2 4 16 8 0,25 simple NA 3 114377189 114377360 3 114396448 114396615 7995448 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 114486801 114487086 3 149705626 149705907 7996516 19 + - 1 2 1 1 146 150 1 0 1 INTRA cancer_singleSample OV_4_T 49 358 356 677 307 699 2 17 12 22 0,5 simple NA 3 115232398 115232564 3 115293083 115293291 8003575 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 234 672 670 780 108 1081 2 10 10 13 0,465116 simple NA 3 115432154 115432322 3 117023026 117023189 8005335 5 + - 0 0 1 1 147 150 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 115734553 115734735 3 115736971 115737184 8008031 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 108 538 7 106 100 589 -2 3 7 4 0,352941 simple NA 3 115825118 115825350 3 115830668 115830968 8008713 8 - + 0 0 1 1 67 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 561 557 885 324 892 4 6 18 36 0,181818 simple NA 3 115901255 115901491 3 116286453 116286709 8009336 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 0 614 612 772 158 790 2 6 6 8 0,461538 simple NA 3 116280681 116280867 3 116852824 116852973 8011786 6 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_3_T;chainID=4 3 116421248 116421456 3 116438509 116438769 8013137 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T 0 625 626 1250 625 1250 -1 10 28 31 0,253165 simple NA 3 116425404 116425616 3 117251229 117251484 8013177 31 - + 0 0 1 1 148 147 1 0 1 DUP cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_3_T;chainID=4 3 116567516 116567777 3 117530598 117530834 8014520 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 0 628 628 904 276 1242 0 11 5 6 0,666667 simple NA 3 116618497 116618704 3 116806711 116806833 8015015 3 + - 0 2 1 1 150 150 1 0 1 DEL cancer_singleSample OV_11_T 0 656 654 766 110 822 2 3 4 7 0,352941 simple NA 3 116703956 116704157 3 116791348 116791598 8015862 23 + - 0 0 1 1 147 142 1 0 1 DEL cancer_singleSample OV_3_T 334 582 17 338 244 616 4 3 23 26 0,109091 mild_stepwise OV_3_T;chainID=4 3 116855405 116855632 3 117147160 117147345 8016760 18 + - 0 0 1 1 147 139 1 0 1 DEL cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_3_T;chainID=4 3 116993853 116994130 3 117335828 117336134 8018062 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 52 578 577 740 162 775 1 8 11 2 0,551724 simple NA 3 117440699 117440923 3 118189217 118189426 8022088 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 25 457 455 691 234 722 2 9 10 19 0,382979 simple NA 3 117534313 117534490 3 117536083 117536225 8022893 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 646 1121 0 649 472 1142 3 3 26 18 0,12 simple NA 3 117676486 117676743 3 126174832 126175088 8024281 12 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 608 780 0 610 170 812 2 8 27 17 0,266667 extreme_stepwise LUSC_11_T;chainID=1 3 117775673 117775977 3 149476466 149476742 8025249 14 + - 0 1 1 1 150 117 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 3 117895044 117895219 3 122886781 122886935 8026402 4 + + 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_1_T 0 717 716 775 58 820 1 5 6 15 0,322581 mild_oneoff OV_1_T;chainID=1 3 118024983 118025266 3 118026251 118026519 8027789 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 545 547 885 339 900 -2 3 16 19 0,146341 simple NA 3 118944459 118944588 3 120097420 120097589 8035533 6 + + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_6_T 601 942 0 603 339 958 2 6 15 11 0,315789 mild_oneoff BRCA_6_T;chainID=1 3 118952641 118952854 3 119056976 119057198 8035580 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 592 1208 356 591 236 1208 -1 8 13 16 0,355556 mild_oneoff BRCA_6_T;chainID=1 3 119043347 119043506 3 165642691 165642885 8036030 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff BRCA_6_T;chainID=1 3 119072746 119072981 3 126579826 126580089 8036255 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 621 632 888 257 888 -11 11 21 20 0,349206 extreme_stepwise LUSC_11_T;chainID=1 3 119418824 119418943 5 137099011 137099114 9335548 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 220 759 61 222 159 800 2 3 21 44 0,084507 simple NA 3 119522691 119522915 3 127114381 127114611 8039352 10 - - 0 2 1 1 127 150 1 0 1 INTRA cancer_singleSample BRCA_12_T 428 749 0 433 316 763 5 17 9 6 0,693878 mild_oneoff BRCA_12_T;chainID=1 3 119532012 119532201 3 119533409 119533613 8039372 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_12_T 609 872 0 609 263 887 0 28 12 15 0,674699 mild_oneoff BRCA_12_T;chainID=1 3 119533684 119533891 3 123964699 123964893 8039377 7 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_12_T 0 498 507 646 140 646 -9 0 4 17 0 mild_oneoff BRCA_12_T;chainID=1 3 119571087 119571237 3 119813573 119813698 8039795 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 119795240 119795433 3 119806196 119806413 8041397 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 119933629 119933855 3 126576070 126576328 8042434 9 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 28 448 447 820 372 847 1 10 27 18 0,307692 extreme_stepwise LUSC_11_T;chainID=1 3 119936672 119936849 3 119987545 119987772 8042460 9 + + 0 0 1 1 98 150 1 0 1 INV cancer_singleSample LUSC_11_T 0 415 422 686 265 821 -7 3 20 29 0,109091 extreme_stepwise LUSC_11_T;chainID=1 3 119987231 119987508 3 155910359 155910633 8042819 16 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 607 813 0 609 204 814 2 9 27 25 0,257143 extreme_stepwise LUSC_11_T;chainID=1 3 121889224 121889488 3 190117364 190117619 8059626 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 42 342 341 868 299 886 1 3 26 15 0,12766 simple NA 3 122161474 122161684 3 122164200 122164392 8061416 7 - + 0 1 1 1 150 113 1 0 1 DUP cancer_singleSample OV_4_T 0 624 623 755 131 786 1 10 14 50 0,238095 simple NA 3 122886685 122886832 3 124783914 124784121 8065610 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_1_T 488 829 37 488 341 892 0 2 14 14 0,125 mild_oneoff OV_1_T;chainID=1 3 123312299 123312526 3 123332994 123333101 8067794 5 + - 0 0 1 1 150 119 1 0 1 DEL cancer_singleSample OV_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 123359237 123359346 3 123366071 123366176 8068031 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_7_T 45 210 210 449 165 466 0 4 13 18 0,205128 simple NA 3 123608242 123608421 3 124104532 124104743 8069610 17 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_12_T 61 363 363 639 276 653 0 30 9 15 0,714286 simple NA 3 123958208 123958550 3 125897569 125897980 8072851 119 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 609 1070 4 612 458 1070 3 39 19 14 0,702703 simple NA 3 123997938 123998202 3 126832853 126833249 8073153 59 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 0 633 632 689 56 689 1 NA NA NA NA simple NA 3 124064810 124065110 3 149827076 149827254 8073731 6 - - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_1_T 600 772 0 602 170 808 2 2 27 41 0,0555556 simple NA 3 124393421 124393563 3 124394774 124394911 8076457 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 440 642 60 442 200 643 2 8 29 22 0,238806 simple NA 3 124590472 124590609 3 125712667 125712826 8077694 4 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 275 811 36 265 230 833 -10 6 0 21 0,363636 simple NA 3 124775957 124776078 3 183846749 183846908 8078834 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 730 1002 0 723 273 1002 -7 5 18 6 0,294118 extreme_stepwise LUSC_11_T;chainID=1 3 125257329 125257502 3 149468967 149469141 8081934 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 508 1073 13 504 492 1085 -4 1 25 12 0,0512821 extreme_stepwise LUSC_11_T;chainID=1 3 125416747 125416938 3 125439182 125439322 8083046 4 + - 1 0 1 1 150 54 1 0 1 DEL cancer_singleSample GBM_14_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 126081434 126081584 3 126082892 126083030 8086545 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_1_T 47 635 640 765 126 796 -5 5 32 30 0,138889 simple NA 3 126240717 126241097 3 185241635 185241979 8086848 88 + + 0 0 1 1 150 148 1 0 1 INTRA cancer_singleSample LUSC_6_T 550 761 1 551 210 761 1 2 14 21 0,102564 simple NA 3 126888717 126889177 3 126898250 126898905 8089499 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 127181365 127181806 3 177743376 177743682 8090590 58 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 604 912 0 605 307 912 1 37 17 36 0,582677 extreme_stepwise LUSC_6_T;chainID=1 3 127188124 127188433 3 182820478 182820770 8090599 43 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_6_T;chainID=1 3 127658389 127658503 3 133278497 133278648 8092445 4 + + 0 0 1 1 150 69 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 3 127685383 127685589 3 127696097 127696493 8092739 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 127796464 127796581 3 129577724 129577880 8093275 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 655 974 29 580 320 1012 -75 3 13 25 0,136364 extreme_stepwise LUSC_11_T;chainID=1 3 127847501 127847731 3 127852251 127852526 8093466 24 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 128421690 128421826 3 138162930 138163052 8095408 3 - + 0 0 1 1 105 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 18 539 598 926 329 926 -59 1 20 27 0,0408163 extreme_stepwise LUSC_11_T;chainID=1 3 128555942 128556090 3 169375925 169376049 8096011 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 651 672 765 94 772 -21 7 24 30 0,205882 extreme_stepwise LUSC_11_T;chainID=1 3 128556337 128556614 3 186678897 186679147 8096013 3 - - 0 0 1 1 77 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 619 619 901 282 905 0 1 12 16 0,0666667 extreme_stepwise LUSC_11_T;chainID=1 3 128668082 128668257 3 128668747 128668910 8096417 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_11_T 0 625 625 704 79 765 0 2 24 12 0,1 simple NA 3 128849210 128849386 3 128851831 128852000 8097014 3 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 128889833 128890116 3 128913586 128913851 8097224 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 28 122 121 532 93 587 1 5 33 30 0,136986 simple NA 3 128894822 128894967 3 128897402 128897582 8097231 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 128964763 128964997 3 129495389 129495658 8097591 4 + + 1 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T 46 551 476 893 342 907 75 2 10 23 0,108108 extreme_stepwise LUSC_11_T;chainID=1 3 129066856 129067078 3 133199561 133199767 8097928 14 - + 0 0 1 1 150 93 1 0 1 INTRA cancer_singleSample LUSC_11_T 647 721 0 619 75 724 -28 NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 3 129069098 129069211 3 197206458 197206601 8097938 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 519 744 35 397 226 744 -122 12 17 15 0,428571 extreme_stepwise LUSC_11_T;chainID=1 3 129380701 129380895 3 185774144 185774370 8098936 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 274 704 9 272 264 704 -2 4 20 17 0,177778 extreme_stepwise LUSC_11_T;chainID=1 3 129409959 129410103 3 129419055 129419221 8099216 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 626 821 0 611 196 825 -15 0 31 29 0 simple NA 3 129460445 129460665 3 134147510 134147718 8099557 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 605 618 981 364 986 -13 9 28 12 0,310345 extreme_stepwise LUSC_11_T;chainID=1 3 129489631 129489872 3 134029358 134029583 8099747 10 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 613 917 0 611 305 953 -2 11 32 17 0,309859 extreme_stepwise LUSC_11_T;chainID=1 3 129546804 129546907 3 184011074 184011186 8100124 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 34 178 225 769 145 772 -47 11 16 17 0,4 extreme_stepwise LUSC_11_T;chainID=1 3 129556277 129556574 3 140587302 140587574 8100196 11 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 564 1109 0 564 545 1136 0 10 9 22 0,392157 extreme_stepwise LUSC_11_T;chainID=1 3 129576345 129576584 3 180346227 180346479 8100306 7 + - 0 0 1 1 114 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 3 129582587 129582739 3 133636871 133637024 8100332 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 3 130051757 130051878 3 130075472 130075653 8103080 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 130168272 130168567 3 140933780 140934071 8104294 11 - - 1 1 1 1 72 150 1 0 1 INTRA cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_1_T;chainID=3 3 130168537 130168799 3 130393669 130393926 8104296 9 + + 1 1 1 1 115 150 1 0 1 INV cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_1_T;chainID=3 3 130168861 130169165 3 131010048 131010321 8104307 15 - + 2 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_1_T;chainID=3 3 130465726 130465887 3 132015227 132015458 8106247 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_1_T;chainID=3 3 130872402 130872572 3 165998684 165998856 8108933 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 132256120 132256228 3 133412391 133412526 8120103 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 507 666 13 489 160 687 -18 11 15 6 0,511628 extreme_stepwise LUSC_11_T;chainID=1 3 132375267 132375353 3 132440410 132440506 8121239 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_8_T 697 862 0 699 163 874 2 4 9 8 0,32 extreme_oneoff GBM_8_T;chainID=2 3 132388171 132388293 3 172628942 172629058 8121276 5 - + 0 0 1 1 150 140 1 0 1 INTRA cancer_singleSample GBM_8_T 402 845 18 403 384 851 1 4 11 6 0,32 extreme_oneoff GBM_8_T;chainID=2 3 132440656 132440757 3 169093719 169093837 8121562 5 - - 0 0 1 1 135 107 1 0 1 INTRA cancer_singleSample GBM_8_T 0 340 340 432 92 432 0 NA NA NA NA extreme_oneoff GBM_8_T;chainID=2 3 132534505 132534602 3 150888708 150888932 8122169 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 0 627 627 963 336 1005 0 7 5 16 0,4 extreme_oneoff GBM_8_T;chainID=2 3 132641891 132642038 3 168794115 168794208 8123048 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 579 1198 0 585 579 1198 6 5 14 5 0,344828 simple NA 3 132865176 132865286 3 161722229 161722367 8124541 3 - - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 24 189 182 667 158 961 7 5 14 4 0,357143 extreme_oneoff GBM_8_T;chainID=2 3 132875631 132875750 3 137262270 137262442 8124732 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 0 585 583 954 369 961 2 4 2 9 0,421053 extreme_oneoff GBM_8_T;chainID=2 3 133085462 133085604 3 133297139 133297305 8126492 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 0 610 607 881 271 886 3 18 27 26 0,404494 simple NA 3 133105722 133105926 3 158964856 158965014 8126539 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 14 280 283 445 163 484 -3 7 10 8 0,4375 extreme_oneoff GBM_8_T;chainID=2 3 133167866 133168049 3 133175263 133175474 8126809 11 + - 0 0 1 1 150 142 1 0 1 DEL cancer_singleSample GBM_8_T 312 594 20 315 279 595 3 4 14 12 0,235294 extreme_oneoff GBM_8_T;chainID=2 3 133171515 133171699 3 138436382 138436515 8126849 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 452 633 0 402 182 634 -50 8 21 29 0,242424 extreme_stepwise LUSC_11_T;chainID=1 3 133280223 133280447 3 168989616 168989841 8127414 7 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 308 672 9 272 264 715 -36 20 19 23 0,487805 extreme_stepwise LUSC_11_T;chainID=1 3 133291253 133291358 3 183816495 183816665 8127466 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 609 839 0 616 223 839 7 3 18 18 0,142857 extreme_stepwise LUSC_11_T;chainID=1 3 133296882 133297094 3 196721287 196721479 8127474 9 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 3 133408469 133408745 3 186794754 186795028 8128144 9 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 609 610 710 101 740 -1 9 24 15 0,315789 extreme_stepwise LUSC_11_T;chainID=1 3 133412390 133412698 3 133417835 133418105 8128166 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 606 811 0 607 204 816 1 6 5 9 0,461538 simple NA 3 133612540 133612752 3 165535671 165535817 8129115 5 - + 0 0 1 1 118 150 1 0 1 INTRA cancer_singleSample GBM_8_T 3 216 215 804 212 804 1 4 17 4 0,275862 simple NA 3 133665307 133665424 3 197341711 197341867 8129363 3 + + 0 0 1 1 150 129 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 565 669 948 280 1006 -104 11 15 30 0,328358 extreme_stepwise LUSC_11_T;chainID=1 3 134034192 134034379 3 197229941 197230191 8131560 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 11 547 535 876 329 888 12 0 10 16 0 extreme_stepwise LUSC_11_T;chainID=1 3 134037104 134037324 3 197226115 197226310 8131565 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 49 588 591 844 254 871 -3 5 20 1 0,322581 extreme_stepwise LUSC_11_T;chainID=1 3 134037530 134037801 3 134315106 134315260 8131570 7 + + 1 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T 272 548 88 245 158 570 -27 5 12 16 0,263158 extreme_stepwise LUSC_11_T;chainID=1 3 134110347 134110560 3 134315106 134315234 8131822 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T 0 634 663 946 284 967 -29 0 20 1 0 extreme_stepwise LUSC_11_T;chainID=1 3 134134925 134135187 3 138461526 138461794 8131917 18 + + 0 0 1 1 129 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 89 342 341 981 252 992 1 8 38 31 0,188235 extreme_stepwise LUSC_11_T;chainID=1 3 134428992 134429237 3 134435135 134435380 8133779 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 619 826 0 620 206 837 1 1 3 10 0,133333 simple NA 3 134573236 134573401 3 149990174 149990332 8134725 5 - + 0 1 1 1 148 136 1 0 1 INTRA cancer_singleSample GBM_8_T 565 613 18 565 48 650 0 NA NA NA NA simple NA 3 134607355 134607452 3 157594178 157594329 8134976 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 0 539 539 754 215 755 0 3 6 10 0,272727 simple NA 3 134716434 134716588 7 136100627 136100784 9372376 5 - - 0 0 1 1 150 36 1 0 1 INTER cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 135411442 135411686 3 135413425 135413596 8141567 4 + - 5 0 1 1 130 150 1 0 1 DEL cancer_singleSample OV_4_T 46 376 0 45 46 988 -1 2 0 18 0,181818 simple NA 3 135882602 135882762 3 163385627 163385759 8145461 7 - + 0 0 1 1 134 132 1 0 1 INTRA cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_8_T;chainID=2 3 135939104 135939243 3 172381541 172381788 8145795 7 + - 0 0 1 1 106 113 1 0 1 INTRA cancer_singleSample GBM_8_T 4 533 532 685 152 692 1 4 19 69 0,0833333 extreme_oneoff GBM_8_T;chainID=2 3 135986494 135986609 3 135993920 135994076 8146019 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 301 589 67 300 234 617 -1 6 22 28 0,193548 simple NA 3 136376214 136376312 3 158126366 158126536 8148921 4 + + 0 1 1 1 112 123 1 0 1 INTRA cancer_singleSample GBM_8_T 234 556 21 281 213 577 47 0 10 37 0 simple NA 3 136528490 136528732 3 136590555 136590793 8149877 13 + - 0 0 1 1 150 143 1 0 1 DEL cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 136555275 136555446 3 138036806 138037012 8149978 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 475 792 4 463 318 804 -12 2 0 9 0,307692 simple NA 3 136593638 136593927 5 137954456 137954734 9336963 9 - + 1 0 1 1 150 135 1 0 1 INTER cancer_singleSample LUSC_11_T 569 673 40 570 103 1132 1 7 19 23 0,25 extreme_stepwise LUSC_11_T;chainID=1 3 137054286 137054454 3 137055414 137055569 8153644 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 39 459 459 642 183 663 0 6 9 4 0,48 simple NA 3 137465990 137466152 3 142989005 142989189 8158208 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 275 487 35 277 210 492 2 1 7 7 0,125 simple NA 3 137678818 137678962 3 139317356 139317522 8160048 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 138166293 138166608 3 184001840 184002105 8162995 25 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 3 138513271 138513549 3 138636243 138636505 8164784 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 33 150 150 451 117 451 0 4 30 25 0,126984 simple NA 3 138706223 138706434 3 167092439 167092539 8165603 5 - - 0 1 1 1 136 138 1 0 1 INTRA cancer_singleSample GBM_8_T 591 745 0 591 154 784 0 2 16 7 0,148148 extreme_oneoff GBM_8_T;chainID=2 3 138909211 138909352 3 138917142 138917344 8166884 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 380 753 12 384 368 761 4 5 11 13 0,294118 simple NA 3 139518204 139518332 3 139519246 139519388 8171947 4 + - 1 0 1 1 150 40 1 0 1 DEL cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 139573681 139573887 3 139574590 139574767 8172697 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 139696644 139696777 3 145668364 145668487 8173773 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_7_T 104 346 13 105 91 361 1 2 28 17 0,0816327 simple NA 3 139837412 139837604 3 139918610 139918804 8174892 5 - - 1 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 140429682 140429800 3 142313607 142313781 8180691 5 + - 1 1 1 1 150 134 1 0 1 INTRA cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 140582856 140583126 3 197578770 197579049 8182645 13 - - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 3 140656957 140657157 3 176189781 176189994 8183559 7 - - 0 0 1 1 62 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 2 659 672 1088 417 1117 -13 5 44 30 0,119048 extreme_stepwise LUSC_11_T;chainID=1 3 140659558 140659778 3 194493830 194494048 8183567 9 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 578 836 21 547 259 855 -31 9 29 8 0,327273 extreme_stepwise LUSC_11_T;chainID=1 3 140823999 140824194 3 152253690 152253897 8184382 5 + + 0 0 1 1 150 127 1 0 1 INTRA cancer_singleSample GBM_8_T 153 402 10 153 143 404 0 5 11 14 0,285714 simple NA 3 140935410 140935674 3 140945533 140945826 8185256 15 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 248 594 17 249 231 1025 1 3 18 24 0,125 simple NA 3 141719601 141719790 3 141720500 141720678 8190369 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 53 331 346 981 279 981 -15 5 12 29 0,196078 simple NA 3 142380139 142381056 3 142391312 142392099 8195014 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 142625994 142626111 3 142714093 142714274 8196898 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 38 227 223 757 185 757 4 5 6 7 0,434783 simple NA 3 142844434 142844735 3 142845871 142846176 8198080 25 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 182 224 23 184 40 284 2 6 23 21 0,214286 simple NA 3 143326929 143327176 3 181457792 181458039 8202093 8 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_3_T;chainID=7 3 143491881 143492102 3 143525279 143525530 8203546 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 143518594 143518785 3 147884796 147884992 8203764 10 + + 0 0 1 1 137 126 1 0 1 INTRA cancer_singleSample LUSC_3_T 341 620 24 346 274 690 5 11 75 28 0,176 simple NA 3 144259195 144259328 3 144269562 144270493 8210685 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 144435252 144435436 3 144435924 144436120 8212513 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 34 619 616 825 206 829 3 6 28 21 0,196721 simple NA 3 144943572 144943777 3 176855591 176855776 8216987 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 144946443 144946584 3 176875141 176875371 8217001 6 + + 0 0 1 1 99 150 1 0 1 INTRA cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 145684260 145684484 3 145688763 145688983 8223774 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 1243 1354 1353 1518 110 1582 1 3 16 15 0,162162 simple NA 3 145707111 145707247 3 147970817 147970992 8224047 9 + - 0 0 1 1 146 150 1 0 1 INTRA cancer_singleSample OV_3_T 605 904 0 603 300 939 -2 3 5 16 0,222222 simple NA 3 145882159 145882486 3 161847515 161847921 8225336 15 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 145901844 145902073 3 166839839 166840236 8225589 13 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 145918717 145918893 3 169040924 169041076 8225682 7 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_8_T;chainID=2 3 146093803 146094130 3 166809264 166809497 8227357 9 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 84 535 534 879 344 904 1 9 15 34 0,268657 extreme_stepwise LUSC_5_T;chainID=1 3 146177264 146177523 7 148285901 148286134 9372849 14 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_1_T 461 878 0 462 416 893 1 10 36 15 0,28169 extreme_oneoff LUSC_1_T;chainID=2 3 146199506 146199770 7 148281976 148282227 9372851 10 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_1_T 9 116 113 658 104 658 3 7 27 24 0,215385 extreme_oneoff LUSC_1_T;chainID=2 3 146317203 146317316 3 190964170 190964287 8228947 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 563 765 6 565 200 779 2 7 25 32 0,197183 extreme_stepwise LUSC_5_T;chainID=1 3 146505196 146505449 3 151069117 151069412 8230576 27 - + 0 0 1 1 149 150 1 0 1 INTRA cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 146619349 146619622 3 161802315 161802697 8231611 12 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 146639804 146640069 3 161847992 161848281 8231812 10 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 246 386 175 247 71 488 1 6 37 38 0,137931 extreme_stepwise LUSC_5_T;chainID=1 3 146677591 146677835 3 146909040 146909179 8232195 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 147185491 147185623 3 172267390 172267591 8236629 5 - + 0 0 1 1 145 125 1 0 1 INTRA cancer_singleSample GBM_8_T 472 917 7 468 446 939 -4 5 5 4 0,526316 extreme_oneoff GBM_8_T;chainID=2 3 147315426 147315580 3 147325405 147325923 8237970 3 - - 1 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 147348563 147348846 3 147350554 147350844 8238264 25 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 22 122 122 516 100 516 0 20 34 15 0,449438 simple NA 3 148183060 148183180 3 148186062 148186171 8246610 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 148765391 148765621 3 161533638 161533905 8251191 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 148780355 148780644 3 163985601 163985896 8251256 11 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 0 610 610 821 211 861 0 4 39 6 0,150943 simple NA 3 149043145 149043272 3 149367711 149367966 8253040 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 78 228 225 553 147 564 3 14 41 27 0,291667 mild_stepwise BRCA_4_T;chainID=6 3 149057749 149057986 3 149337349 149337504 8253231 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 429 570 291 384 94 570 -45 15 43 34 0,280374 mild_stepwise BRCA_4_T;chainID=6 3 149069967 149070175 3 160832148 160832444 8253310 5 + + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 149300482 149300645 3 161168776 161168965 8254955 8 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 149333920 149334015 3 168393277 168393359 8255242 3 + + 1 5 1 1 150 115 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 149452932 149453220 3 149494196 149494518 8256102 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 149500491 149500722 3 151662786 151663027 8256458 9 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 3 149664100 149664305 3 150128575 150128806 8257592 5 + - 0 4 1 1 150 143 1 0 1 DEL cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_1_T;chainID=2 3 149982314 149982514 3 183025005 183025171 8260380 9 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 545 606 717 112 878 -61 8 22 20 0,275862 extreme_stepwise LUSC_11_T;chainID=1 3 150071169 150071424 3 166235925 166236237 8261260 22 + + 2 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_1_T;chainID=2 3 150269834 150270046 3 163520885 163521100 8262791 3 + - 0 4 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 150314216 150314458 3 161259125 161259368 8263111 7 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T 21 541 540 1165 519 1165 1 4 24 30 0,129032 simple NA 3 151035242 151035473 3 157353793 157354076 8268012 22 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T 5 247 238 293 46 294 9 NA NA NA NA mild_stepwise LUSC_3_T;chainID=3 3 151049998 151050248 3 153575073 153575313 8268186 11 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_3_T;chainID=3 3 151054541 151054755 3 164986970 164987185 8268223 20 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_3_T;chainID=3 3 151205089 151205341 3 157002866 157003139 8269101 11 + - 0 1 1 1 130 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 604 790 0 606 184 792 2 14 15 16 0,474576 simple NA 3 151652755 151653016 3 152153812 152154079 8273249 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 44 273 271 881 227 881 2 11 8 30 0,366667 simple NA 3 151722010 151722192 6 157102380 157102545 9355893 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T 10 367 379 526 148 844 -12 11 30 20 0,305556 simple NA 3 152043912 152044051 3 152052222 152052389 8276748 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 592 1168 0 596 572 1168 4 2 10 7 0,190476 simple NA 3 152154127 152154219 3 152206915 152207021 8277591 3 + - 0 0 1 1 150 126 1 0 1 DEL cancer_singleSample OV_7_T 0 615 614 735 120 743 1 5 7 5 0,454545 simple NA 3 153062016 153062396 3 166946713 166946990 8284373 17 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 611 944 0 611 333 944 0 7 36 40 0,155556 extreme_stepwise LUSC_5_T;chainID=1 3 153067975 153068129 3 158258046 158258222 8284426 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 185 486 38 186 147 486 1 6 31 23 0,181818 extreme_stepwise LUSC_5_T;chainID=1 3 153122791 153122938 3 156023157 156023321 8284755 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 153384592 153384842 3 191708530 191708950 8287336 9 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 153403654 153403870 3 167446622 167446853 8287469 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 153534828 153534906 3 153535291 153535367 8288628 3 + - 0 0 1 1 124 116 1 0 1 DEL cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 153866126 153866384 3 154715309 154715579 8292051 14 + - 0 1 1 1 150 102 1 0 1 DEL cancer_singleSample OV_1_T 0 617 617 743 126 827 0 3 29 29 0,09375 simple NA 3 154126160 154126372 3 169216167 169216307 8294170 5 + + 0 0 1 1 136 150 1 0 1 INTRA cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 154303365 154303524 3 156542450 156542595 8295818 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_10_T 85 695 9 92 76 695 7 13 20 36 0,317073 simple NA 3 154447535 154447755 3 164921709 164921938 8297438 7 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_1_T 0 630 627 724 94 725 3 NA NA NA NA simple NA 3 154968843 154969107 3 191028028 191028242 8302457 19 - + 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 15 587 585 777 190 816 2 7 32 35 0,17284 extreme_stepwise LUSC_5_T;chainID=1 3 154977770 154977971 3 154981908 154982159 8302608 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 302 908 33 299 267 915 -3 4 25 27 0,133333 simple NA 3 154988379 154988655 3 158251314 158251611 8302747 15 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 155599438 155599716 3 157230582 157230878 8307373 18 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 614 1224 0 616 608 1224 2 7 30 35 0,177215 simple NA 3 155973091 155973300 3 169375906 169376079 8309816 9 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 360 710 28 365 332 716 5 5 19 19 0,208333 extreme_stepwise LUSC_11_T;chainID=1 3 156004957 156005115 3 156074424 156074670 8309992 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 413 679 6 417 262 694 4 4 14 18 0,2 simple NA 3 156286711 156286905 3 160358286 160358679 8312635 7 + + 0 0 1 1 134 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 156385861 156386188 3 168404006 168404307 8313439 9 - - 0 0 1 1 150 144 1 0 1 INTRA cancer_singleSample LUSC_5_T 248 635 25 256 223 635 8 4 27 40 0,106667 extreme_stepwise LUSC_5_T;chainID=1 3 156408273 156408551 3 156409472 156409748 8313555 15 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 629 625 818 189 858 4 8 22 27 0,246154 simple NA 3 156514817 156514964 3 191906892 191907104 8314301 6 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 4 468 465 607 139 623 3 5 26 35 0,140845 simple NA 3 157259024 157259341 3 158536818 158537087 8321709 7 + - 1 2 1 1 146 150 1 0 1 INTRA cancer_singleSample OV_1_T 0 609 612 926 315 957 -3 6 25 23 0,2 simple NA 3 157355460 157355740 3 162241957 162242223 8322725 35 + - 0 0 1 1 125 150 1 0 1 INTRA cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_3_T;chainID=3 3 157396878 157397056 3 173310324 173310492 8323219 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_8_T 227 412 13 230 182 453 3 3 11 12 0,206897 simple NA 3 157503981 157504139 3 157596259 157596449 8324402 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 158258210 158258457 3 167445090 167445541 8330644 11 - - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 21 391 386 556 165 571 5 16 25 42 0,323232 extreme_stepwise LUSC_5_T;chainID=1 3 158680203 158680444 3 166066690 166066966 8333556 73 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 395 552 0 396 156 574 1 53 34 41 0,585635 extreme_stepwise LUSC_5_T;chainID=1 3 158680246 158680441 3 166021693 166021993 8333549 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 90 327 341 685 238 710 -14 33 43 22 0,503817 extreme_stepwise LUSC_5_T;chainID=1 3 158692545 158692825 3 166066688 166066965 8333718 91 - - 0 0 1 1 150 141 1 0 1 INTRA cancer_singleSample LUSC_5_T 105 474 472 774 300 777 2 42 36 32 0,552632 extreme_stepwise LUSC_5_T;chainID=1 3 158692580 158692914 3 163789092 163789396 8333835 124 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 181 437 0 181 181 453 0 22 42 40 0,349206 extreme_stepwise LUSC_5_T;chainID=1 3 158692619 158692868 3 166016132 166016734 8333824 19 - - 1 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 368 535 20 370 165 535 2 51 58 50 0,485714 extreme_stepwise LUSC_5_T;chainID=1 3 158692673 158692863 3 163809071 163809265 8333857 6 + - 2 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 158870737 158870926 3 158874932 158875142 8335688 5 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 0 127 125 582 125 609 2 7 34 24 0,194444 simple NA 3 158892400 158892564 3 164024135 164024340 8335873 5 + + 1 0 1 1 150 125 1 0 1 INTRA cancer_singleSample GBM_8_T 22 203 202 563 180 578 1 4 7 13 0,285714 extreme_oneoff GBM_8_T;chainID=2 3 159245543 159245823 3 159252288 159252546 8338962 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 37 404 403 773 366 793 1 15 16 22 0,441176 simple NA 3 159322016 159322226 3 171513494 171513694 8339883 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_1_T 383 745 80 389 303 753 6 5 36 35 0,123457 mild_oneoff LUSC_1_T;chainID=3 3 159371080 159371261 3 160807447 160807580 8340431 3 - + 7 0 1 1 116 150 1 0 1 INTRA cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 159787129 159787448 3 167101444 167101700 8343534 18 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 17 365 365 660 295 1342 0 17 43 29 0,320755 simple NA 3 160121667 160121985 3 160146472 160146719 8346164 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 160161567 160161753 3 163206352 163206542 8346372 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 10 268 294 872 259 874 -26 0 20 23 0 simple NA 3 160198054 160198358 3 162219777 162220118 8346633 37 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 160214132 160214401 3 160237593 160237823 8346783 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 160330903 160331034 3 161969458 161969677 8347502 7 - + 0 0 1 1 150 141 1 0 1 INTRA cancer_singleSample GBM_8_T 365 700 0 365 335 700 0 1 20 65 0,0229885 simple NA 3 160350027 160350199 3 161875879 161876093 8347696 4 + + 0 0 1 1 150 127 1 0 1 INTRA cancer_singleSample GBM_8_T 50 147 141 494 91 494 6 3 6 10 0,272727 simple NA 3 160359611 160359834 3 160360586 160360810 8347840 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_1_T 13 394 412 719 308 719 -18 6 40 36 0,136364 simple NA 3 160376558 160376849 3 160821830 160822132 8348069 161 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 160458033 160458242 3 160473424 160473594 8348675 14 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 160499894 160500198 3 182994403 182994673 8348968 50 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T 604 950 6 606 344 950 2 29 46 46 0,386667 mild_stepwise LUSC_3_T;chainID=7 3 160617293 160617583 3 160621877 160622133 8350042 32 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 6 191 210 303 94 397 -19 0 35 38 0 simple NA 3 161106982 161107160 3 161172594 161172846 8353901 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 276 328 326 658 50 664 2 1 12 8 0,0909091 simple NA 3 161726439 161726752 3 161782351 161782640 8361098 17 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 161728119 161728359 3 162073845 162074313 8361138 15 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_6_T 0 632 632 1100 468 1150 0 13 20 18 0,40625 simple NA 3 161855203 161855337 3 171513970 171514121 8362469 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_1_T 85 195 192 733 107 753 3 2 27 40 0,056338 mild_oneoff LUSC_1_T;chainID=3 3 161880528 161880783 3 167451232 167451510 8362748 17 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 161944959 161945169 3 165907170 165907428 8363391 7 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_1_T;chainID=3 3 162104782 162104904 3 172307472 172307610 8364885 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 0 446 445 765 319 775 1 1 12 11 0,08 extreme_oneoff GBM_8_T;chainID=2 3 162222694 162222831 3 168789224 168789417 8366159 8 + - 0 0 1 1 150 144 1 0 1 INTRA cancer_singleSample GBM_8_T 92 517 14 93 78 663 1 1 7 15 0,0833333 simple NA 3 162406448 162406703 3 183146245 183146487 8367479 10 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 162834081 162834620 3 162847630 162848413 8371109 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T 141 403 403 569 166 587 0 0 19 29 0 simple NA 3 162943803 162944039 3 164988530 164988845 8372280 9 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 12 180 180 790 168 790 0 15 15 12 0,526316 simple NA 3 163145790 163145989 3 163146942 163147159 8374216 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 45 504 502 843 339 867 2 6 9 19 0,3 simple NA 3 163504543 163504735 3 170257447 170257663 8377758 16 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T 0 55 52 669 52 669 3 28 30 37 0,455285 simple NA 3 163520439 163520596 3 163576360 163576603 8377923 6 + + 2 0 1 1 150 54 1 0 1 INV cancer_singleSample OV_1_T 602 745 0 606 139 756 4 6 24 46 0,146341 simple NA 3 163587559 163587742 3 163638409 163638627 8378754 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 0 610 614 1076 463 1089 -4 5 7 19 0,277778 simple NA 3 163661357 163661625 3 172425844 172426098 8379486 16 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 586 716 4 593 123 731 7 9 44 47 0,165138 simple NA 3 163697615 163697894 3 165674793 165675085 8379780 5 + - 2 0 1 1 84 150 1 0 1 INTRA cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 163779338 163779512 3 163782117 163782296 8380630 4 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 163809081 163809199 3 164131381 164131487 8381041 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T 43 290 289 400 110 541 1 38 55 49 0,422222 extreme_stepwise LUSC_5_T;chainID=1 3 163809114 163809313 3 164202464 164202745 8381044 17 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 164067270 164067418 3 164091602 164091865 8383582 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T 12 354 351 436 82 452 3 22 56 45 0,303448 extreme_stepwise LUSC_5_T;chainID=1 3 164067273 164067412 3 164088189 164088388 8383583 15 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T 19 266 263 411 145 458 3 36 55 56 0,393443 extreme_stepwise LUSC_5_T;chainID=1 3 164071435 164071714 3 166017098 166017420 8383658 27 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 164071511 164071706 3 164136317 164136479 8383659 17 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T 20 399 393 530 131 531 6 29 40 53 0,384106 extreme_stepwise LUSC_5_T;chainID=1 3 164071722 164071849 3 164088810 164088956 8383671 17 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 164071760 164071954 3 164136313 164136508 8383682 33 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T 430 590 183 433 157 590 3 32 40 52 0,410256 extreme_stepwise LUSC_5_T;chainID=1 3 164088167 164088460 3 181649670 181650170 8383814 60 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 280 691 38 283 242 725 3 9 61 56 0,133333 extreme_stepwise LUSC_5_T;chainID=1 3 164088814 164088956 3 181627216 181627393 8383822 15 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 164131381 164131492 3 164202385 164202632 8384067 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T 89 200 212 482 112 659 -12 39 59 40 0,440678 extreme_stepwise LUSC_5_T;chainID=1 3 164202204 164202394 3 164206576 164206831 8384787 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 227 519 71 230 156 545 3 6 53 29 0,12766 simple NA 3 164587215 164587494 3 164595454 164595654 8388176 9 - + 2 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_9_T 248 659 36 247 212 680 -1 8 13 17 0,347826 simple NA 3 164609830 164610009 3 164611462 164611646 8388406 4 + - 0 0 1 1 150 70 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 164669119 164669383 3 164671255 164671545 8388839 17 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 165436767 165437001 3 165479192 165479494 8396071 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 165576402 165576619 3 165583515 165583711 8397205 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 495 942 7 496 446 950 1 6 23 37 0,166667 simple NA 3 165829072 165829270 3 165830052 165830240 8399466 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 166011015 166011128 3 181628044 181628160 8401403 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 166011104 166011288 3 181627028 181627159 8401406 12 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 166017238 166017367 3 181628161 181628270 8401470 7 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 166017349 166017472 3 182431490 182431597 8401471 7 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 166269226 166269543 3 173293577 173293874 8403636 9 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 230 484 13 233 217 520 3 6 51 34 0,123711 simple NA 3 167175485 167175692 3 167177871 167178071 8412070 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 359 541 13 364 177 576 5 12 24 14 0,387097 simple NA 3 167279639 167279780 3 167293448 167293601 8413278 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 541 1058 336 542 205 1066 1 12 29 28 0,296296 simple NA 3 167443259 167443510 3 190389441 190389786 8415009 16 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 282 736 5 284 277 790 2 6 14 17 0,27907 extreme_stepwise LUSC_5_T;chainID=1 3 167445800 167446085 3 191713356 191713716 8415034 18 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 122 476 7 120 114 576 -2 8 30 27 0,219178 extreme_stepwise LUSC_5_T;chainID=1 3 167971458 167971744 3 167975399 167975648 8419413 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 6 573 571 824 251 846 2 10 45 41 0,188679 simple NA 3 168795551 168795707 3 168810858 168811023 8427832 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 168857076 168857297 3 169961887 169962158 8428322 5 - + 2 3 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 169210196 169210462 3 171690642 171691018 8431512 14 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 250 750 749 941 191 962 1 11 39 36 0,226804 simple NA 3 169355062 169355207 3 183938893 183939022 8432528 8 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 533 860 4 486 328 879 -47 5 8 4 0,454545 extreme_stepwise LUSC_11_T;chainID=1 3 169377400 169377526 3 187936346 187936578 8432668 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 601 627 832 206 849 -26 2 34 21 0,0677966 extreme_stepwise LUSC_11_T;chainID=1 3 169377667 169377885 3 193515023 193515209 8432669 7 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 1 102 136 715 102 715 -34 9 20 19 0,315789 extreme_stepwise LUSC_11_T;chainID=1 3 169859872 169860081 3 172104069 172104266 8436664 6 - - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 169902253 169902445 3 169903151 169903384 8436943 4 + - 0 0 1 1 125 150 1 0 1 DEL cancer_singleSample BRCA_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 170761258 170761525 3 170762434 170762674 8443568 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 110 348 31 107 77 367 -3 3 37 34 0,0779221 simple NA 3 170865156 170865517 3 178468002 178468342 8444576 33 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 605 979 0 609 370 979 4 8 40 37 0,172043 mild_stepwise LUSC_5_T;chainID=5 3 171071889 171072095 3 171271720 171271945 8446516 9 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T 44 341 341 553 212 553 0 8 19 17 0,307692 simple NA 3 171531393 171531657 3 174645740 174645988 8450240 7 + - 5 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 171931648 171931887 3 183402404 183402621 8452985 7 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 763 925 45 707 163 938 -56 8 21 11 0,333333 extreme_stepwise LUSC_11_T;chainID=1 3 171939285 171939439 3 171950985 171951113 8453040 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 172215246 172215477 3 172288684 172288913 8455237 7 - - 1 2 1 1 150 146 1 0 1 INV cancer_singleSample OV_5_T 1 284 283 526 242 529 1 3 35 31 0,0833333 simple NA 3 172215311 172215555 3 172525459 172525658 8455236 14 + + 2 1 1 1 150 150 1 0 1 INV cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 172385248 172385343 3 172905774 172905878 8456592 3 - - 1 2 1 1 111 150 1 0 1 INV cancer_singleSample GBM_8_T 12 360 359 943 347 943 1 2 10 4 0,222222 extreme_oneoff GBM_8_T;chainID=2 3 172422396 172422659 3 172443656 172443925 8456823 3 + - 0 0 1 1 109 116 1 0 1 DEL cancer_singleSample LUSC_7_T 237 805 6 238 231 805 1 2 40 31 0,0533333 simple NA 3 172584071 172584324 3 172588666 172588917 8457999 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 172671317 172671521 3 172962642 172962755 8458680 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_8_T 316 530 17 318 212 578 2 4 8 5 0,380952 extreme_oneoff GBM_8_T;chainID=2 3 172772963 172773290 3 172784166 172784589 8459787 27 - + 0 0 1 1 150 148 1 0 1 DUP cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 172783316 172783480 3 174420114 174420246 8459874 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_1_T 0 715 713 908 193 934 2 2 38 34 0,0526316 simple NA 3 172787378 172787518 3 172804017 172805206 8459895 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 173415276 173415424 3 174506247 174506428 8466650 4 + - 0 0 1 1 128 150 1 0 1 INTRA cancer_singleSample BRCA_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 174171755 174171967 3 174321766 174322002 8474088 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 174214744 174214934 3 174418728 174418925 8474648 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 490 772 383 493 107 775 3 4 46 42 0,0833333 simple NA 3 174257545 174257760 3 174261104 174261335 8474978 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 174463112 174463359 3 174635632 174635965 8476808 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 174807148 174807308 3 193269666 193269812 8480230 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 174984057 174984202 3 175342806 175342972 8481898 5 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_2_T 204 827 0 207 204 827 3 7 29 26 0,202899 simple NA 3 175498731 175499058 3 175625147 175625420 8486005 10 - + 0 0 1 1 150 93 1 0 1 DUP cancer_singleSample LUSC_8_T 47 178 175 492 128 492 3 7 25 22 0,229508 simple NA 3 175585654 175585867 3 175589089 175589357 8487120 4 + - 0 0 1 1 150 65 1 0 1 DEL cancer_singleSample LUSC_8_T 212 404 412 516 105 530 -8 2 13 31 0,0833333 simple NA 3 175587755 175588025 3 181494028 181494303 8487158 14 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_3_T;chainID=7 3 175595957 175596081 3 175636685 175636830 8487200 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T 30 491 498 922 425 929 -7 6 48 47 0,11215 mild_stepwise LUSC_3_T;chainID=7 3 175597052 175597258 3 175669254 175669470 8487212 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T 292 660 0 296 292 660 4 8 54 50 0,133333 mild_stepwise LUSC_3_T;chainID=7 3 176087309 176087500 3 176092627 176092844 8492377 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 643 743 17 645 98 761 2 11 49 42 0,19469 simple NA 3 176709933 176710177 3 176711285 176711507 8499370 17 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 176819896 176820030 3 176822697 176822833 8500272 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T 0 644 649 1269 621 1269 -5 3 13 18 0,162162 simple NA 3 176875330 176875497 3 176890056 176890281 8500719 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 177119294 177119404 3 177135472 177135598 8502042 3 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_1_T 454 674 1 453 221 714 -1 9 44 39 0,178218 simple NA 3 177254468 177254771 3 178968499 178968818 8502991 460 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise BRCA_1_T;chainID=3 3 177258073 177258225 3 178967540 178967793 8503085 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise BRCA_1_T;chainID=3 3 177415460 177415585 3 177926606 177926714 8507131 5 - + 0 0 1 1 150 89 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise BRCA_1_T;chainID=3 3 177566956 177567123 3 177927137 177927318 8511495 21 + - 0 0 1 1 150 133 1 0 1 DEL cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise BRCA_1_T;chainID=3 3 177986272 177986573 3 177998621 177999094 8522438 5 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise BRCA_1_T;chainID=3 3 178042942 178043202 3 178787846 178788130 8523726 156 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise BRCA_1_T;chainID=3 3 178072557 178072777 3 178074345 178074548 8524601 16 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 218 869 62 221 156 869 3 4 40 34 0,097561 simple NA 3 178100441 178100596 3 178861155 178861315 8525326 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise BRCA_1_T;chainID=3 3 178516875 178517325 3 178551308 178551748 8537158 143 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_5_T;chainID=5 3 178522490 178522718 3 178534370 178534565 8537352 8 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_5_T;chainID=5 3 178545917 178546208 3 178613047 178613328 8537693 37 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_5_T;chainID=5 3 178549534 178549682 3 178551277 178551436 8537831 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_5_T;chainID=5 3 178631691 178631980 3 178687720 178688119 8539704 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_6_T 12 567 566 696 129 697 1 9 45 39 0,176471 simple NA 3 179119812 179119978 3 187266894 187267079 8547472 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 720 922 0 672 203 975 -48 1 23 9 0,0588235 simple NA 3 179357793 179357997 3 182936781 182937020 8549412 9 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_3_T;chainID=7 3 179606809 179607049 3 179610506 179610771 8551059 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 547 549 791 243 796 -2 5 38 41 0,11236 simple NA 3 180323909 180324075 3 197578412 197578541 8558288 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 3 180324801 180324935 3 197580763 197580936 8558304 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 611 972 0 611 361 981 0 4 22 11 0,195122 extreme_stepwise LUSC_11_T;chainID=1 3 180468017 180468307 3 183034838 183035121 8559582 71 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T 62 117 116 719 54 719 1 12 52 42 0,20339 mild_stepwise LUSC_3_T;chainID=7 3 180605983 180606138 3 180640346 180640525 8561029 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 9 133 133 742 124 742 0 4 31 27 0,121212 simple NA 3 180639345 180639630 3 181306010 181306311 8561264 81 - - 0 0 1 1 150 106 1 0 1 INV cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 180662969 180663166 3 180714522 180714762 8561425 8 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_5_T 0 640 643 860 218 883 -3 6 29 31 0,166667 mild_oneoff OV_5_T;chainID=3 3 180758060 180758211 3 182743181 182743403 8562245 3 + - 2 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T 0 636 655 831 177 839 -19 0 23 16 0 simple NA 3 180787947 180788102 3 183222504 183222861 8562559 10 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 181014988 181015099 3 181024555 181024990 8564569 3 + + 0 0 1 1 150 126 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 181418160 181418386 3 181428787 181429032 8568666 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 181546060 181546332 3 189054243 189054536 8569403 49 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_10_T;chainID=3 3 181553596 181553751 3 181739878 181740056 8569443 5 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_10_T;chainID=3 3 181553820 181553936 3 189157593 189157767 8569448 10 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_10_T;chainID=3 3 181553828 181553924 3 181716477 181716649 8569449 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_10_T;chainID=3 3 181572662 181572759 3 181716593 181716706 8569618 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_10_T;chainID=3 3 181572765 181572899 3 181738435 181738619 8569620 7 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_10_T;chainID=3 3 181598091 181598216 3 182372274 182372376 8569809 3 - - 0 1 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 181598156 181598621 3 182287925 182288060 8569810 19 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 181612298 181612581 3 181613936 181614249 8569871 15 + - 0 0 1 1 144 150 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 181627028 181627167 3 182281517 182281653 8569955 15 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 181627813 181627969 3 182372274 182372376 8569960 5 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 181627876 181628022 3 182287909 182288036 8569961 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 181628037 181628160 3 182289282 182289416 8569964 10 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 181628161 181628270 3 182431531 182431680 8569965 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 181673201 181673430 3 181690112 181690342 8570168 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_10_T;chainID=3 3 181704470 181704668 3 181801638 181801874 8570498 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_10_T;chainID=3 3 181715382 181715632 3 189129268 189129454 8570589 13 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_10_T;chainID=3 3 181738840 181739138 3 189107198 189107424 8570789 15 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_10_T;chainID=3 3 181847932 181848174 3 182982146 182982406 8571788 11 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_7_T;chainID=1 3 182098440 182098807 3 182963369 182963690 8574108 44 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_6_T;chainID=1 3 182109220 182109542 3 182889868 182890125 8574208 39 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_6_T 445 614 0 448 166 626 3 24 55 34 0,350365 extreme_stepwise LUSC_6_T;chainID=1 3 182281510 182281752 3 182372824 182373200 8575950 318 + + 0 0 1 1 150 148 1 0 1 INV cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 182281605 182281751 3 182289280 182289416 8575957 27 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 182287909 182288357 3 182372271 182372891 8576070 463 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 182288639 182289180 3 182380642 182381120 8576076 405 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 182289280 182289416 3 182373226 182373569 8576092 40 - - 1 0 1 1 150 140 1 0 1 INV cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 182374004 182374348 3 182376616 182376928 8577015 60 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 182374359 182374479 3 182431951 182432124 8577023 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 182374364 182374494 3 182431586 182431745 8577022 8 - + 2 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 182441804 182442262 3 183384341 183384617 8577518 47 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 3 182619313 182619492 3 184427133 184427333 8578831 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T 14 211 210 425 196 435 1 3 15 11 0,1875 simple NA 3 182876762 182877044 3 182890505 182890814 8580834 16 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_7_T;chainID=1 3 182994391 182994575 3 182999485 182999699 8581602 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 183071882 183072134 3 183077005 183077397 8582217 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 183251632 183251890 3 183302479 183302755 8583546 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 183341793 183341940 3 190300562 190300769 8584143 3 - - 1 0 1 1 100 150 1 0 1 INTRA cancer_singleSample BRCA_2_T 222 428 72 224 150 431 2 12 10 23 0,421053 simple NA 3 183405325 183405551 3 185045692 185045909 8584518 6 - - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 406 827 19 410 387 894 4 1 22 7 0,0645161 extreme_stepwise LUSC_11_T;chainID=1 3 183465820 183465987 3 183485165 183485362 8584881 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 183615303 183615476 3 183906521 183906687 8585803 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_16_T 13 123 123 762 110 762 0 6 13 8 0,363636 extreme_oneoff GBM_16_T;chainID=3 3 183627058 183627267 3 183904839 183905040 8585841 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_16_T 608 897 0 609 288 950 1 4 9 3 0,4 extreme_oneoff GBM_16_T;chainID=3 3 183655936 183656074 3 183699572 183699719 8586123 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_16_T 612 852 0 612 240 889 0 16 19 10 0,52459 extreme_oneoff GBM_16_T;chainID=3 3 183695899 183696100 3 183838326 183838487 8586384 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_16_T 168 591 34 168 134 591 0 5 1 16 0,37037 extreme_oneoff GBM_16_T;chainID=3 3 183696737 183696855 3 183945419 183945547 8586394 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_16_T 436 619 22 436 183 654 0 6 19 3 0,352941 extreme_oneoff GBM_16_T;chainID=3 3 183716770 183716990 3 183777766 183777996 8586577 7 - + 0 0 1 1 150 106 1 0 1 DUP cancer_singleSample GBM_16_T 600 731 0 598 132 754 -2 2 14 6 0,166667 extreme_oneoff GBM_16_T;chainID=3 3 183731927 183732050 3 183865488 183865612 8586668 4 + + 0 0 1 1 150 127 1 0 1 INV cancer_singleSample GBM_16_T 642 788 0 638 147 831 -4 14 13 8 0,571429 extreme_oneoff GBM_16_T;chainID=3 3 183733872 183734052 3 183769393 183769542 8586672 7 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_16_T;chainID=3 3 183735494 183735690 3 183739329 183739574 8586674 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 158 768 23 159 135 768 1 4 11 24 0,186047 simple NA 3 183743060 183743265 3 183773381 183773617 8586735 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 38 241 237 720 199 720 4 33 34 28 0,515625 simple NA 3 183779412 183779546 3 183866442 183866596 8586984 6 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_16_T;chainID=3 3 183794779 183794980 3 183837559 183837721 8587096 6 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_16_T 609 1182 0 609 573 1200 0 9 15 8 0,439024 extreme_oneoff GBM_16_T;chainID=3 3 183823089 183823356 3 183840863 183841144 8587218 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 614 705 0 616 89 720 2 5 17 11 0,263158 simple NA 3 183845371 183845562 3 195468220 195468427 8587429 15 + + 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 3 183873979 183874100 3 183880959 183881082 8587512 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_16_T 0 672 671 1151 479 1707 1 5 4 7 0,47619 extreme_oneoff GBM_16_T;chainID=3 3 183931808 183931960 3 183933625 183933765 8587718 3 + - 5 3 1 1 117 150 1 0 1 DEL cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 183966722 183966983 3 183990079 183990351 8587816 6 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 1 158 157 769 156 769 1 4 7 30 0,177778 simple NA 3 183967393 183967584 3 183978410 183978607 8587820 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 184171036 184171205 3 184555247 184555463 8588568 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 35 381 379 450 69 483 2 1 31 23 0,0357143 simple NA 3 184198266 184198417 3 184462949 184463095 8588828 13 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 413 668 0 413 255 669 0 28 23 25 0,538462 simple NA 3 184276793 184276971 3 184403003 184403184 8589125 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_1_T 0 618 615 820 202 859 3 2 42 29 0,0533333 simple NA 3 184964921 184965165 3 196640879 196641111 8593193 14 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 575 690 0 561 116 707 -14 12 14 24 0,387097 extreme_stepwise LUSC_11_T;chainID=1 3 185047072 185047328 3 193574731 193574961 8593700 12 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 3 185478400 185478554 3 187953821 187953949 8596844 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 400 681 54 360 282 697 -40 6 20 18 0,24 extreme_stepwise LUSC_11_T;chainID=1 3 185586166 185586314 3 185744438 185744583 8597589 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 185948209 185948458 3 186797557 186797884 8600136 6 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T 44 466 465 907 421 935 1 2 14 13 0,129032 extreme_stepwise LUSC_11_T;chainID=1 3 186219866 186220077 3 187139422 187139578 8602290 3 - - 3 2 1 1 142 150 1 0 1 INV cancer_singleSample OV_5_T 620 797 0 621 176 799 1 4 34 32 0,108108 simple NA 3 186422182 186422460 3 186721347 186721582 8604046 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 77 535 532 665 130 683 3 15 28 33 0,32967 simple NA 3 186685371 186685579 3 196441049 196441287 8605631 9 - - 1 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 662 1094 0 656 433 1118 -6 7 9 24 0,297872 extreme_stepwise LUSC_11_T;chainID=1 3 187751612 187751845 3 187758023 187758243 8616434 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 21 425 428 798 371 809 -3 11 0 36 0,37931 simple NA 3 187939551 187939835 3 197243532 197243805 8618570 7 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 624 621 681 57 727 3 3 19 5 0,2 extreme_stepwise LUSC_11_T;chainID=1 3 188015443 188015631 3 188016725 188016987 8619287 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_7_T 20 283 282 405 122 409 1 8 34 43 0,172043 simple NA 3 188257651 188257872 3 188393998 188394263 8621375 9 - - 1 3 1 1 150 150 1 0 1 INV cancer_singleSample GBM_9_T 611 793 0 615 178 821 4 7 17 11 0,333333 simple NA 3 189061865 189062068 3 189210930 189211145 8629420 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 33 286 287 825 254 843 -1 7 38 34 0,162791 simple NA 3 189129978 189130095 3 189172855 189173019 8629951 3 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_10_T;chainID=3 3 189204588 189204822 3 189467817 189468039 8630752 4 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 18 436 428 591 155 645 8 7 21 22 0,245614 mild_oneoff OV_5_T;chainID=1 3 189211620 189211808 3 189347865 189348038 8630795 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_10_T;chainID=3 3 189518528 189518765 3 190022225 190022436 8634523 14 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 36 600 599 681 81 722 1 6 42 42 0,125 extreme_stepwise LUSC_13_T;chainID=9 3 189566816 189566992 3 189593423 189593601 8634876 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_13_T;chainID=9 3 189575590 189575750 3 189679950 189680151 8634991 5 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_13_T;chainID=9 3 189590441 189590699 3 189638564 189638846 8635158 26 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_13_T;chainID=9 3 189591855 189592186 3 189670104 189670349 8635166 12 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_13_T;chainID=9 3 189593422 189593508 3 189634004 189634199 8635177 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_13_T;chainID=9 3 189595982 189596280 3 189602520 189602789 8635186 19 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_13_T;chainID=9 3 189602801 189603094 3 189679516 189679821 8635251 57 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_13_T;chainID=9 3 189621904 189622126 3 189640033 189640254 8635452 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_13_T;chainID=9 3 189621930 189622081 3 189644181 189644388 8635453 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_13_T;chainID=9 3 189624109 189624339 3 189642265 189642524 8635488 11 - + 0 0 1 1 88 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_13_T;chainID=9 3 189634514 189634822 3 189645539 189645845 8635703 239 - + 0 0 1 1 150 149 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_13_T;chainID=9 3 189637671 189637911 3 189678001 189678280 8635714 36 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_13_T;chainID=9 3 189644928 189645169 3 189680602 189680854 8635783 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_13_T;chainID=9 3 189652003 189652214 3 189663458 189663704 8635943 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_13_T;chainID=9 3 189656587 189656851 3 189684566 189684845 8636008 85 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_13_T;chainID=9 3 190146019 190146269 3 190149381 190149656 8640063 24 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 64 498 496 1024 432 1062 2 11 28 32 0,268293 simple NA 3 190337235 190337501 3 190339720 190339938 8641725 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 190756280 190756581 3 197436553 197436845 8646270 7 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 190928663 190928910 3 191000353 191000573 8647809 8 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 417 514 19 421 93 531 4 3 33 21 0,1 simple NA 3 191326919 191327106 3 191331952 191332141 8651422 4 + - 0 0 1 1 150 127 1 0 1 DEL cancer_singleSample LUSC_13_T 557 853 44 559 294 875 2 6 36 42 0,133333 simple NA 3 191446177 191446464 3 191447542 191447824 8652301 39 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 558 793 0 561 232 797 3 11 26 24 0,305556 simple NA 3 191602568 191602797 3 192086542 192086759 8653872 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 192313721 192313913 3 192617774 192618007 8660417 4 + - 0 0 1 1 127 119 1 0 1 DEL cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 192630763 192631051 3 193638537 193638752 8662514 6 - + 0 0 1 1 134 150 1 0 1 INTRA cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 192942835 192943059 3 192946169 192946456 8665457 21 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 0 610 612 760 149 793 -2 12 4 3 0,774194 simple NA 3 193517354 193517642 3 193518146 193518381 8670356 14 + - 0 0 1 1 129 146 1 0 1 DEL cancer_singleSample OV_10_T 36 281 279 497 216 543 2 9 8 8 0,529412 simple NA 3 193571029 193571230 3 197241756 197241925 8670833 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 617 825 0 589 209 828 -28 3 18 10 0,176471 extreme_stepwise LUSC_11_T;chainID=1 3 193675472 193675661 3 193684255 193684458 8671619 7 + - 0 0 1 1 145 105 1 0 1 DEL cancer_singleSample GBM_7_T 593 858 1 593 265 986 0 4 6 12 0,307692 simple NA 3 194092439 194092599 3 194094312 194094497 8673593 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T 153 675 4 151 148 675 -2 10 7 13 0,5 simple NA 3 194368895 194369086 3 194370334 194370546 8674998 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 194492543 194492835 3 195763410 195763703 8675756 71 + + 0 0 1 1 150 126 1 0 1 INTRA cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_3_T;chainID=2 3 194524418 194524552 3 194525473 194525764 8675918 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 9 308 308 493 185 495 0 12 15 9 0,5 simple NA 3 195691285 195691364 3 195692209 195692454 8704606 3 + - 0 0 1 1 150 43 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 3 195955396 195955586 3 195958436 195958644 8706013 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 4 613 614 737 124 767 -1 8 23 23 0,258065 simple NA 3 196662975 196663174 3 197322382 197322621 8710617 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 3 196845097 196845320 3 196849632 196849936 8713066 15 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 216 814 4 217 212 830 1 7 36 34 0,166667 simple NA 3 196864187 196864336 3 196875841 196875989 8713203 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 601 792 791 1154 190 1154 1 4 17 23 0,166667 simple NA 3 197130706 197130968 3 197147144 197147420 8716595 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 9 421 420 622 201 622 1 9 23 19 0,3 simple NA 3 197506020 197506319 3 197519966 197520227 8718622 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 35 464 464 816 352 817 0 5 24 21 0,181818 simple NA 4 2007422 2007689 8 141476532 141476804 10997769 3 - + 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 0 609 607 914 305 950 2 10 20 34 0,27027 mild_stepwise LUSC_11_T;chainID=6 4 5157541 5157756 4 5158411 5158613 10556581 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 14 171 170 779 156 779 1 9 14 11 0,418605 simple NA 4 6334170 6334345 4 7222090 7222341 10646317 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 0 609 611 1033 423 1033 -2 6 9 16 0,324324 simple NA 4 7629321 7629593 7 131908389 131908620 10990065 5 + - 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_8_T 352 951 60 357 292 951 5 9 6 8 0,5625 simple NA 4 7631438 7631663 7 131908722 131908948 10990076 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_8_T 0 660 658 779 119 791 2 6 5 11 0,428571 simple NA 4 8229777 8229966 8 105626958 105627193 11006066 9 + - 0 1 1 1 133 141 1 0 1 INTER cancer_singleSample OV_8_T 354 514 0 353 161 545 -1 20 5 6 0,784314 simple NA 4 8514423 8514613 7 25922998 25923237 10991113 5 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_8_T 549 605 64 554 51 617 5 NA NA NA NA simple NA 4 8514651 8514875 7 25922688 25922875 10991114 9 - + 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_8_T 0 606 606 736 130 742 0 17 12 13 0,576271 simple NA 4 10347018 10347201 8 81720808 81720956 10994018 13 + - 0 0 1 1 129 145 1 0 1 INTER cancer_singleSample OV_8_T 565 678 0 565 113 680 0 17 19 4 0,596491 simple NA 4 10911954 10912130 4 10912550 10912710 9483515 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_12_T 638 683 0 624 46 685 -14 NA NA NA NA simple NA 4 12778356 12778572 4 12787829 12788085 9632163 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 160 785 49 160 111 785 0 6 9 10 0,387097 simple NA 4 12923079 12923302 5 39795701 39795890 10931154 7 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 17393815 17394078 X 53237945 53238014 2459725 5 + + 1 1 1 1 140 45 1 0 1 INTER cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 18063977 18064079 4 18066681 18066926 10044758 4 + - 0 2 1 1 150 112 1 0 1 DEL cancer_singleSample OV_10_T 0 593 596 1136 541 1137 -3 9 2 11 0,580645 simple NA 4 19610607 19610856 4 19890273 19890567 10113425 10 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_1_T 0 605 603 1041 436 1047 2 7 7 8 0,482759 simple NA 4 19681588 19681682 4 19683811 19683993 10114098 3 - + 0 0 1 1 150 137 1 0 1 DUP cancer_singleSample OV_8_T 583 846 0 583 263 852 0 6 14 10 0,333333 simple NA 4 19803070 19803253 4 105870181 105870320 10115247 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T 358 529 49 355 172 539 -3 6 6 5 0,521739 simple NA 4 20228707 20228862 4 20648681 20648885 10118901 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_3_T 582 1184 0 584 582 1184 2 4 5 13 0,307692 simple NA 4 20389666 20389915 4 23824005 23824238 10119861 5 + + 1 2 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T 3 429 429 726 297 766 0 4 4 4 0,5 simple NA 4 20582784 20583075 4 24459108 24459408 10120925 14 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T 603 717 0 604 113 795 1 9 13 8 0,461538 simple NA 4 20789284 20789490 4 20792504 20792783 10122343 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 196 827 39 192 154 827 -4 7 25 22 0,229508 simple NA 4 21042411 21042679 4 21044550 21044805 10124067 12 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 21983869 21984152 4 21987572 21987838 10131459 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 614 857 0 617 240 877 3 7 12 18 0,318182 simple NA 4 23528245 23528479 4 24279174 24279434 10143482 11 + + 1 1 1 1 150 150 1 0 1 INV cancer_singleSample GBM_9_T 613 903 0 613 290 942 0 10 9 4 0,606061 simple NA 4 25456265 25456556 4 25459607 25459866 10155565 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 612 1228 0 616 612 1228 4 6 7 6 0,48 simple NA 4 27154821 27155078 8 30794632 30794913 10998673 14 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T 409 797 3 407 389 815 -2 10 17 8 0,444444 simple NA 4 27546579 27546838 4 28823110 28823360 10169517 8 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_12_T 403 1016 36 402 367 1016 -1 12 12 18 0,444444 simple NA 4 27641203 27641414 5 153529762 153529839 10936448 7 - - 0 2 1 1 150 150 1 0 1 INTER cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 28761499 28761685 4 28797388 28797553 10179207 7 - - 0 0 1 1 145 150 1 0 1 INV cancer_singleSample GBM_10_T 578 949 0 579 370 966 1 4 4 2 0,571429 simple NA 4 28909099 28909303 4 28909939 28910132 10180327 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T 0 641 638 1265 624 1266 3 3 11 9 0,230769 simple NA 4 29110549 29110816 4 35374804 35375076 10181914 13 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 0 625 622 764 139 791 3 7 24 17 0,254545 simple NA 4 29734574 29734677 4 73224246 73224366 10186819 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_8_T 210 730 80 212 130 734 2 12 30 7 0,393443 simple NA 4 30752479 30752642 4 30818715 30818902 10194607 9 + + 0 0 1 1 124 149 1 0 1 INV cancer_singleSample OV_10_T 580 731 0 584 147 751 4 5 4 2 0,625 simple NA 4 32108097 32108312 4 32110303 32110486 10204104 5 + - 0 0 1 1 150 125 1 0 1 DEL cancer_singleSample BRCA_1_T 0 628 627 849 221 859 1 8 8 5 0,551724 simple NA 4 32211331 32211613 4 32213666 32213936 10204881 10 - + 0 0 1 1 150 134 1 0 1 DUP cancer_singleSample LUSC_13_T 249 878 22 249 227 878 0 5 25 15 0,2 simple NA 4 32526681 32526874 4 32531638 32531817 10207151 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 33202856 33203097 8 73784065 73784284 10999277 6 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 0 629 627 836 207 849 2 6 12 22 0,26087 mild_oneoff LUSC_11_T;chainID=2 4 34098841 34098981 4 168534467 168534651 10219192 3 + + 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_8_T 237 351 57 241 110 398 4 16 5 6 0,744186 simple NA 4 35372799 35373071 4 35375311 35375595 10227298 23 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 36 527 529 729 201 755 -2 19 18 24 0,475 simple NA 4 35865534 35865753 4 35873208 35873454 10230720 14 - + 0 0 1 1 147 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 603 598 702 99 703 5 12 19 22 0,369231 simple NA 4 36140251 36140384 4 36148255 36148445 10232863 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 0 601 603 959 357 967 -2 13 12 20 0,448276 simple NA 4 36400441 36400579 4 36404046 36404178 10234346 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 36404100 36404185 4 36407284 36407436 10234369 4 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 609 606 745 136 787 3 12 9 11 0,545455 simple NA 4 36633857 36633998 4 57728053 57728205 10236107 3 - + 0 0 1 1 138 129 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 36936591 36936806 4 36940969 36941202 10238058 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 473 625 8 480 145 682 7 8 17 14 0,340426 simple NA 4 36950036 36950252 4 48453451 48453581 10238171 3 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T 608 803 0 607 196 850 -1 8 11 7 0,470588 simple NA 4 38232335 38232523 4 38243033 38243238 10244773 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 312 659 38 306 269 665 -6 3 2 24 0,1875 simple NA 4 38307005 38307228 4 38313941 38314191 10245117 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 0 577 581 872 292 887 -4 5 6 20 0,277778 simple NA 4 38851064 38851317 X 64677947 64678054 2462765 3 + - 0 5 1 1 34 91 1 0 1 INTER cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 39195963 39196139 4 64421072 64421226 10250059 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 8 360 366 975 353 975 -6 9 17 12 0,382979 simple NA 4 39940472 39940701 4 41758726 41758981 10254063 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T 0 627 629 1244 616 1244 -2 9 6 7 0,580645 simple NA 4 40004074 40004330 4 40031371 40031600 10254579 6 - + 0 0 1 1 128 113 1 0 1 DUP cancer_singleSample OV_10_T 168 396 31 171 137 399 3 7 10 3 0,518519 simple NA 4 40293788 40293980 5 79428475 79428728 10938205 8 - + 1 0 1 1 110 150 1 0 1 INTER cancer_singleSample OV_5_T 430 859 0 430 429 882 0 11 18 20 0,366667 simple NA 4 40444604 40444867 5 79197748 79197989 10938238 10 + - 1 4 1 1 150 148 1 0 1 INTER cancer_singleSample OV_5_T 310 927 134 312 176 928 2 5 13 8 0,322581 simple NA 4 40541280 40541517 4 40577569 40577767 10257567 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 586 968 0 587 381 1019 1 3 16 10 0,1875 simple NA 4 41310328 41310561 4 41342292 41342536 10261292 13 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_1_T 321 569 83 321 238 572 0 7 26 28 0,205882 simple NA 4 42219547 42219756 4 42263416 42263709 10266351 17 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 0 291 293 709 292 715 -2 19 10 16 0,59375 simple NA 4 45340767 45340893 4 45567554 45567714 10289723 4 - + 4 0 1 1 85 69 1 0 1 DUP cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 46153391 46153631 5 56839722 56839991 10939556 8 + - 0 0 1 1 150 77 1 0 1 INTER cancer_singleSample BRCA_4_T 83 587 586 746 159 757 1 10 10 38 0,294118 mild_stepwise BRCA_4_T;chainID=7 4 46434364 46434531 7 92861668 92861884 10982067 4 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_3_T 8 222 221 568 213 579 1 2 11 1 0,25 simple NA 4 46997225 46997372 4 47878340 47878519 10303837 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_7_T 602 1058 0 602 456 1072 0 3 10 8 0,25 simple NA 4 47027090 47027264 4 47033472 47033682 10304140 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 604 1022 0 608 414 1064 4 5 13 27 0,2 simple NA 4 48776852 48777138 4 48783776 48784090 10315755 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_7_T 0 629 621 812 183 823 8 6 16 26 0,222222 simple NA 4 49260168 49260427 4 49538860 49539203 10514274 3 + + 0 0 1 1 35 38 1 0 1 INV cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 53321696 53321915 4 56048005 56048236 10566979 19 - + 0 1 1 1 118 150 1 0 1 INTRA cancer_singleSample GBM_4_T 0 608 608 803 195 807 0 46 23 18 0,691729 simple NA 4 53610683 53610816 4 53642431 53642656 10569155 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 53741701 53741907 4 158797528 158797787 10569811 10 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T 0 610 608 705 95 910 2 6 12 13 0,324324 simple NA 4 53900964 53901187 4 53963612 53963770 10571057 5 - - 0 0 1 1 95 62 1 0 1 INV cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 54373632 54373851 4 55293702 55293946 10574527 91 - + 0 0 1 1 148 81 1 0 1 DUP cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_8_T;chainID=3 4 54404467 54404592 4 54754982 54755229 10574807 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_8_T;chainID=3 4 54404762 54404915 4 54891898 54892051 10574813 3 - - 0 0 1 1 150 124 1 0 1 INV cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_8_T;chainID=3 4 54420180 54420311 4 54426608 54426820 10574932 5 + - 0 0 1 1 150 143 1 0 1 DEL cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_8_T;chainID=3 4 54733622 54733850 4 55285168 55285384 10577642 26 - + 0 0 1 1 145 150 1 0 1 DUP cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_8_T;chainID=3 4 54870540 54870707 4 55882590 55882765 10578851 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T 291 535 10 292 243 564 1 3 2 16 0,25 simple NA 4 55537924 55538168 4 55556226 55556498 10584453 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 56484407 56484666 4 56491889 56492126 10591893 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 606 605 684 78 689 1 NA NA NA NA simple NA 4 56554302 56554539 4 56558368 56558624 10592559 12 + - 0 0 1 1 150 101 1 0 1 DEL cancer_singleSample LUSC_13_T 614 674 0 618 56 675 4 NA NA NA NA simple NA 4 57081447 57081719 4 132184307 132184542 10595943 10 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_7_T 0 614 612 1026 412 1062 2 6 24 11 0,255319 simple NA 4 57356114 57356322 4 57371416 57371690 10597684 3 - + 4 3 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 57668280 57668544 4 57672512 57672839 10599498 10 + - 0 0 1 1 83 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 59600821 59600946 4 184927851 184927946 10616000 3 + + 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 60684010 60684216 4 87870527 87870676 10625850 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_8_T 188 386 8 189 180 399 1 6 19 17 0,25 simple NA 4 61132373 61132542 4 61136027 61136156 10629310 3 - + 0 0 1 1 150 52 1 0 1 DUP cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 61350995 61351232 4 86510047 86510286 10631160 5 + - 2 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_8_T 559 944 29 561 383 1011 2 9 12 15 0,4 simple NA 4 62290886 62291044 4 65808058 65808352 10638933 10 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 467 570 65 467 103 586 0 3 29 4 0,153846 simple NA 4 62360942 62361166 4 62361620 62361829 10639332 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 38 615 621 837 217 837 -6 14 8 15 0,54902 simple NA 4 62362400 62362584 4 62366151 62366361 10639345 7 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 601 661 0 602 59 672 1 NA NA NA NA simple NA 4 63131051 63131339 4 70428070 70428378 10644465 19 + - 0 0 1 1 146 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 0 584 582 911 327 912 2 11 15 0 0,594595 simple NA 4 63742053 63742208 9 115559750 115559951 11023291 6 + - 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 65020083 65020291 6 130061384 130061528 10965456 21 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_10_T 0 689 687 804 115 831 2 24 19 16 0,578313 simple NA 4 65020884 65021013 6 130061373 130061515 10965457 5 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 65808243 65808459 4 66741166 66741434 10665547 8 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUAD_3_T 627 1213 1 629 584 1213 2 11 13 59 0,234043 simple NA 4 66288248 66288427 4 66288775 66288960 10669414 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 66537613 66537825 4 66553307 66553415 10670950 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 66699912 66700186 4 66700922 66701161 10672364 13 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 66885557 66885839 4 68675852 68676155 10673987 21 - - 0 0 1 1 150 148 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 67304302 67304412 4 67320379 67320514 10677465 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 27 546 540 1203 513 1203 6 7 13 6 0,424242 simple NA 4 69404780 69404862 4 69514188 69514281 10693702 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 69678728 69678850 4 69889105 69889379 10696760 4 - - 1 0 1 1 150 150 1 0 1 INV cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 69791652 69791923 4 76339485 76339758 10697851 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 0 642 642 1244 602 1244 0 15 13 26 0,434783 simple NA 4 70065747 70065898 4 70160576 70160709 10701176 5 + + 0 0 1 1 86 150 1 0 1 INV cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 70977171 70977920 4 70988113 70988391 10710230 3 + + 0 0 1 1 115 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 71687084 71687253 4 71698636 71698862 10716027 4 + - 2 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 72815788 72816038 4 72824302 72824578 10724285 14 - + 0 0 1 1 136 150 1 0 1 DUP cancer_singleSample BRCA_2_T 620 813 0 621 192 842 1 11 26 26 0,297297 simple NA 4 73327513 73327658 9 115560182 115560315 11024136 6 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 73555364 73555599 4 73576813 73577093 10730170 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_12_T 542 1012 8 545 467 1045 3 2 8 4 0,25 simple NA 4 73739527 73739733 8 135082671 135082859 11005264 7 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_3_T;chainID=5 4 73739735 73739936 8 135082485 135082648 11005265 4 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_3_T;chainID=5 4 73966958 73967068 4 73974591 73974825 10733549 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 613 902 0 614 288 914 1 9 29 16 0,285714 simple NA 4 74410748 74410895 4 74838137 74838373 10736252 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_9_T 65 530 525 960 430 960 5 9 2 6 0,692308 simple NA 4 74596646 74596859 7 103945668 103945811 10989893 3 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 590 796 0 595 201 860 5 3 15 11 0,1875 simple NA 4 75811566 75811773 4 75833314 75833470 10747446 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 53 262 259 624 206 655 3 4 16 16 0,2 simple NA 4 77630896 77631029 4 77896335 77896560 10758766 10 - + 0 0 1 1 148 148 1 0 1 DUP cancer_singleSample OV_3_T 0 578 577 901 323 935 1 5 17 12 0,25641 simple NA 4 78024041 78024295 4 78032418 78032654 10760588 4 - + 0 0 1 1 119 150 1 0 1 DUP cancer_singleSample BRCA_2_T 144 550 25 145 119 647 1 0 0 14 0 simple NA 4 78363872 78364175 4 78477111 78477422 10763568 21 + + 0 0 1 1 146 150 1 0 1 INV cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 78677744 78677867 4 79320808 79320954 10765699 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T 0 608 608 1254 608 1254 0 4 13 18 0,205128 simple NA 4 80278157 80278362 4 80282887 80283157 10776448 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 608 606 784 176 789 2 15 19 26 0,4 simple NA 4 80700325 80701025 4 80710983 80711630 10780137 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 81486350 81486512 4 81495561 81496377 10785919 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 82051015 82051178 4 82182814 82182916 10790080 3 + - 0 0 1 1 54 150 1 0 1 DEL cancer_singleSample GBM_10_T 579 698 0 582 116 698 3 4 7 7 0,363636 mild_oneoff GBM_10_T;chainID=2 4 82063773 82063874 4 105404940 105405052 10790166 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_10_T;chainID=2 4 82096701 82096790 4 105404954 105405056 10790300 4 + + 0 0 1 1 128 150 1 0 1 INTRA cancer_singleSample GBM_10_T 85 750 35 87 50 761 2 4 8 2 0,444444 mild_oneoff GBM_10_T;chainID=2 4 83413516 83413698 4 83507757 83508003 10798663 22 - + 0 0 1 1 136 143 1 0 1 DUP cancer_singleSample OV_3_T 11 492 491 617 125 637 1 1 15 21 0,0526316 simple NA 4 84044761 84045021 4 116840796 116841065 10801763 12 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 85 472 470 704 232 716 2 8 16 18 0,32 extreme_oneoff LUSC_6_T;chainID=3 4 84044873 84045123 4 84162178 84162552 10801758 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 624 810 0 625 185 828 1 12 11 7 0,571429 extreme_oneoff LUSC_6_T;chainID=3 4 84062984 84063085 4 84075993 84076190 10801851 4 + - 0 0 1 1 150 129 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 84161741 84161997 4 154803352 154803608 10802485 20 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 615 826 0 617 209 850 2 12 12 4 0,6 extreme_oneoff LUSC_6_T;chainID=3 4 84359333 84359570 4 115979858 115980341 10803590 12 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff LUSC_6_T;chainID=3 4 84359597 84359883 4 118043250 118043482 10803615 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 602 862 0 605 257 862 3 8 10 5 0,516129 extreme_oneoff LUSC_6_T;chainID=3 4 84477413 84477555 4 155178386 155178573 10804252 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 274 903 7 275 267 903 1 7 29 16 0,237288 extreme_oneoff LUSC_6_T;chainID=3 4 84477492 84477686 4 155178440 155178691 10804255 6 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 102 432 434 830 331 1091 -2 18 31 27 0,382979 extreme_oneoff LUSC_6_T;chainID=3 4 84479661 84479823 4 118043544 118043740 10804278 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 437 656 0 413 220 671 -24 11 20 5 0,468085 extreme_oneoff LUSC_6_T;chainID=3 4 84483047 84483278 4 154850538 154850707 10804293 9 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff LUSC_6_T;chainID=3 4 84496621 84496896 4 155152717 155152939 10804329 7 + + 0 1 1 1 99 150 1 0 1 INTRA cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff LUSC_6_T;chainID=3 4 86221607 86221735 8 103339950 103340174 11006447 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_7_T 161 327 324 536 163 576 3 3 18 30 0,111111 simple NA 4 87659630 87659858 4 87877249 87877502 10826931 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 88122381 88122602 4 88179467 88179685 10828911 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 88132401 88132632 4 88133587 88133877 10828972 27 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 88874219 88874473 4 88875605 88875844 10833980 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 143 782 778 925 143 960 4 6 14 20 0,26087 simple NA 4 89059773 89059965 4 89092348 89092567 10834992 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 0 603 602 769 166 787 1 6 19 21 0,230769 simple NA 4 90548180 90548297 4 90548618 90548712 10846315 6 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 91763159 91763359 4 92187930 92188130 10856584 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 0 707 706 1328 621 1328 1 5 12 13 0,285714 simple NA 4 92027777 92028054 6 96380498 96380724 10969330 15 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_8_T 14 409 409 686 277 743 0 8 17 3 0,444444 simple NA 4 92819874 92820066 4 92846907 92847094 10869921 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 570 760 758 869 109 1140 2 10 4 21 0,444444 simple NA 4 93552090 93552320 4 93692834 93693006 10876665 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 93612730 93612934 4 93616561 93616813 10877228 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 615 620 889 270 940 -5 11 16 19 0,385965 simple NA 4 94463368 94463535 4 94604142 94604283 10884291 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 94719259 94719406 4 94724005 94724136 10886178 3 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 94987375 94987633 4 94990794 94991086 10888672 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 95430901 95430983 4 99682612 99682700 10891456 3 - + 4 4 1 1 49 146 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 96044249 96044379 4 96046029 96046288 10895860 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_1_T 0 663 660 1256 593 1256 3 1 7 8 0,117647 simple NA 4 97073867 97074015 4 97074752 97074949 10905095 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 99681143 99681490 4 99691936 99693004 10926467 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 100305167 100305350 4 100387374 100387561 9409170 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 677 1281 19 679 602 1294 2 6 20 10 0,285714 simple NA 4 101052200 101052326 4 101053079 101053204 9414622 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_12_T 0 621 617 1295 617 1295 4 7 3 4 0,666667 simple NA 4 102009040 102009298 4 102013467 102013706 9423135 19 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_10_T 0 624 624 813 189 929 0 12 1 6 0,774194 simple NA 4 102384631 102384727 4 102385620 102385769 9425758 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 17 880 878 1236 356 1263 2 4 7 5 0,4 simple NA 4 102888394 102888623 4 102891093 102891332 9430218 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 527 728 390 528 137 729 1 19 28 20 0,44186 simple NA 4 104694930 104695159 4 104705172 104705388 9444550 15 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 105704738 105704865 4 105836134 105836293 9454345 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_1_T 198 460 457 620 160 748 3 7 16 9 0,358974 simple NA 4 105761970 105762150 4 105771965 105772161 9454892 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_3_T 608 1160 0 612 548 1183 4 5 28 14 0,192308 simple NA 4 106502361 106502560 4 106507203 106507348 9460621 3 - + 1 3 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 210 863 862 1060 197 1081 1 1 7 20 0,0689655 simple NA 4 106578623 106578748 4 185609403 185609689 9461413 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 0 635 631 1245 610 1245 4 1 7 9 0,111111 mild_oneoff LUAD_3_T;chainID=2 4 106584815 106585130 4 180904379 180904669 9461473 4 + - 0 0 1 1 87 100 1 0 1 INTRA cancer_singleSample LUAD_3_T 259 542 61 259 198 647 0 0 3 14 0 mild_oneoff LUAD_3_T;chainID=2 4 106590261 106590403 4 187552905 187553169 9461506 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUAD_3_T;chainID=2 4 106598113 106598370 4 117641545 117641778 9461550 9 - - 0 0 1 1 99 136 1 0 1 INTRA cancer_singleSample LUAD_3_T 585 673 213 586 87 707 1 12 7 14 0,533333 mild_oneoff LUAD_3_T;chainID=2 4 107273929 107274116 4 107282873 107283049 9466583 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 572 1066 43 526 484 1066 -46 10 12 21 0,377358 simple NA 4 107826259 107826470 4 107827556 107827819 9472358 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 108120722 108120967 4 112174090 112174336 9474953 13 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 586 820 0 586 234 820 0 6 9 14 0,342857 mild_oneoff LUAD_3_T;chainID=3 4 108140915 108141179 4 111699863 111700125 9475040 22 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 0 581 580 1182 580 1182 1 5 16 15 0,243902 mild_oneoff LUAD_3_T;chainID=3 4 108691142 108691319 4 129578830 129579038 9480569 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T 0 652 651 964 312 964 1 3 8 16 0,2 simple NA 4 109005655 109005987 4 111046073 111046172 9482890 7 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 14 245 244 822 230 822 1 10 11 7 0,526316 mild_oneoff LUAD_3_T;chainID=3 4 109010368 109010640 4 111046207 111046482 9482906 11 - + 0 0 1 1 127 145 1 0 1 INTRA cancer_singleSample LUAD_3_T 0 611 607 1034 423 1065 4 3 14 6 0,230769 mild_oneoff LUAD_3_T;chainID=3 4 109010847 109010940 4 111046099 111046180 9482909 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUAD_3_T;chainID=3 4 109011733 109011944 4 112174056 112174326 9482924 10 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 0 243 245 826 244 826 -2 6 10 17 0,307692 mild_oneoff LUAD_3_T;chainID=3 4 109967236 109967432 4 109972127 109972329 9489508 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 282 819 25 282 257 863 0 0 15 12 0 simple NA 4 111059599 111059872 4 112174642 112174897 9496800 17 + + 0 0 1 1 150 142 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUAD_3_T;chainID=3 4 113067582 113067827 4 113068362 113068606 9513370 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 113403770 113403963 4 113499662 113499832 9515897 10 - + 0 0 1 1 150 96 1 0 1 DUP cancer_singleSample LUSC_1_T 0 656 660 795 136 841 -4 8 24 69 0,146789 simple NA 4 113707566 113707748 4 114757573 114757813 9517629 6 + - 0 1 1 1 60 133 1 0 1 INTRA cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 113913585 113913798 4 115171284 115171450 9518611 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 0 695 692 828 133 831 3 1 23 20 0,0444444 simple NA 4 114261203 114261427 4 129710167 129710389 9521132 4 - - 0 0 1 1 150 125 1 0 1 INTRA cancer_singleSample LUSC_3_T 174 757 17 175 157 757 1 3 15 14 0,171429 simple NA 4 114402800 114402936 4 114416321 114416449 9522545 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 114604758 114605028 4 130740313 130740559 9524102 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T 0 631 627 1236 605 1236 4 4 17 19 0,181818 simple NA 4 114938021 114938313 4 114941831 114942083 9526715 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 603 600 1208 600 1208 3 15 7 5 0,714286 simple NA 4 116004724 116004988 4 116006492 116006782 9536145 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 597 593 924 327 931 4 12 4 8 0,666667 simple NA 4 116012086 116012265 4 118043158 118043386 9536220 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 664 1146 0 668 478 1160 4 7 9 4 0,518519 extreme_oneoff LUSC_6_T;chainID=3 4 116012562 116012950 4 118042856 118043116 9536233 17 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 436 595 593 1189 157 1204 2 10 14 4 0,526316 extreme_oneoff LUSC_6_T;chainID=3 4 116653018 116653183 4 154803651 154803842 9542331 6 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 14 75 75 511 61 724 0 7 0 11 0,56 extreme_oneoff LUSC_6_T;chainID=3 4 116849880 116850064 4 116942896 116943064 9544323 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 117641743 117641883 4 177014900 177015008 9551086 5 + + 0 0 1 1 115 141 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUAD_3_T;chainID=2 4 117641887 117642044 4 177014727 177014909 9551091 10 - + 0 0 1 1 150 146 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUAD_3_T;chainID=2 4 117757196 117757331 4 117759905 117760103 9552008 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 601 599 770 169 780 2 5 9 13 0,3125 simple NA 4 118428177 118428424 4 118441665 118441939 9558592 16 - + 0 0 1 1 150 124 1 0 1 DUP cancer_singleSample LUSC_13_T 350 830 1 353 349 866 3 15 21 15 0,454545 simple NA 4 118988017 118988286 4 118991219 118991520 9564233 20 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 647 952 0 648 304 952 1 8 1 7 0,666667 simple NA 4 119689718 119689844 4 119692796 119692942 9569216 3 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 119770488 119770707 4 119775610 119775841 9569720 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 121264257 121264541 4 121266657 121266978 9580688 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 122662027 122662193 4 122674286 122674470 9592637 3 - + 0 0 1 1 150 106 1 0 1 DUP cancer_singleSample BRCA_9_T 647 1038 19 648 390 1058 1 4 6 14 0,285714 simple NA 4 123037261 123037443 4 123041312 123041542 9595055 9 + - 1 0 1 1 148 146 1 0 1 DEL cancer_singleSample OV_6_T 582 777 0 584 193 797 2 10 5 11 0,555556 simple NA 4 123287249 123287522 4 123291306 123291551 9596945 11 + - 0 0 1 1 141 117 1 0 1 DEL cancer_singleSample LUSC_13_T 0 628 627 1189 561 1189 1 9 21 40 0,227848 simple NA 4 123450301 123450528 4 123452541 123452805 9598194 19 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 489 950 14 488 462 969 -1 12 20 18 0,387097 simple NA 4 124257601 124257738 4 124259467 124259683 9603958 5 + - 0 0 1 1 81 150 1 0 1 DEL cancer_singleSample OV_10_T 3 590 585 1178 582 1178 5 2 0 0 1 simple NA 4 124377616 124377816 4 124477344 124477539 9604566 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_4_T 0 446 445 720 274 785 1 4 9 7 0,333333 simple NA 4 126443930 126444176 4 126448924 126449150 9621613 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T 619 697 0 614 79 699 -5 NA NA NA NA simple NA 4 130817687 130817807 4 130818889 130819065 9654994 4 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 599 1276 0 599 599 1276 0 8 0 0 1 simple NA 4 132401776 132401971 4 132414771 132415087 9669478 3 + - 1 0 1 1 116 150 1 0 1 DEL cancer_singleSample LUSC_5_T 618 1025 0 620 405 1035 2 1 17 7 0,0769231 simple NA 4 132438224 132438378 4 132438965 132439178 9669776 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 13 147 144 200 53 613 3 5 9 10 0,344828 simple NA 4 132466886 132467102 4 132471867 132472107 9669944 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 610 606 999 389 999 4 9 23 17 0,310345 simple NA 4 132702638 132702875 4 133346684 133346861 9672871 5 - + 0 0 1 1 68 150 1 0 1 DUP cancer_singleSample LUAD_3_T 584 1226 0 588 584 1235 4 5 20 11 0,243902 simple NA 4 139914973 139915253 4 139983931 139984173 9732936 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 301 453 190 303 111 1027 2 2 20 11 0,114286 simple NA 4 141359347 141359579 4 141363653 141363883 9742498 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 617 718 0 619 99 722 2 10 16 18 0,37037 simple NA 4 141553872 141554073 4 141576196 141576451 9743707 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 551 752 432 551 119 1167 0 8 23 16 0,290909 simple NA 4 141783434 141783636 4 141892145 141892337 9745399 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 37 189 188 536 151 581 1 10 21 13 0,37037 simple NA 4 142472509 142472712 4 142989369 142989551 9752013 3 - + 0 0 1 1 103 96 1 0 1 DUP cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 142868468 142868653 4 142869786 142869965 9755849 7 + - 0 1 1 1 129 136 1 0 1 DEL cancer_singleSample OV_10_T 423 1067 0 424 423 1067 1 3 0 0 1 simple NA 4 143130654 143130897 4 143140128 143140341 9759007 7 - + 0 0 1 1 118 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 614 612 781 167 793 2 6 14 13 0,307692 simple NA 4 144254597 144254761 4 144255540 144255711 9769934 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 145982720 145982879 4 146530891 146531074 9787679 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 9 305 301 905 292 905 4 10 21 27 0,294118 simple NA 4 146009754 146009987 4 146010531 146010766 9787825 17 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 608 751 0 609 142 782 1 17 7 5 0,73913 simple NA 4 146628901 146629099 4 146631462 146631649 9792440 14 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 148141305 148141483 4 148972288 148972486 9806127 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 18 322 323 905 305 905 -1 0 12 5 0 simple NA 4 148979918 148980171 4 149032562 149032839 9812547 8 + - 0 3 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 601 840 0 604 236 853 3 7 5 5 0,583333 simple NA 4 150650516 150650747 4 161025988 161026210 9828623 8 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 641 715 0 621 75 725 -20 NA NA NA NA simple NA 4 151046554 151046739 4 151136534 151136787 9832246 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 608 873 0 611 262 939 3 6 16 15 0,27907 simple NA 4 151683481 151683763 4 151686794 151687051 9836954 22 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 591 737 4 593 144 763 2 8 18 25 0,271186 simple NA 4 151777856 151777985 4 151828200 151828304 9837709 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 153123908 153124144 4 153126834 153127045 9846777 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 307 913 76 313 231 913 6 9 12 10 0,45 simple NA 4 153449649 153449831 4 154003691 154003900 9848980 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 347 710 0 351 347 743 4 12 19 13 0,428571 simple NA 4 153468556 153468769 4 186658870 186659101 9849025 11 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T 0 607 606 728 121 749 1 8 6 3 0,64 simple NA 4 153470504 153470738 4 186652362 186652604 9849049 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 153619492 153619763 4 153621955 153622148 9850021 15 + - 1 2 1 1 150 70 1 0 1 DEL cancer_singleSample OV_9_T 0 609 606 675 66 723 3 4 2 28 0,210526 simple NA 4 153896792 153897036 4 154058561 154058797 9851817 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 638 691 0 640 51 711 2 NA NA NA NA simple NA 4 154034518 154034629 4 154120046 154120149 9852977 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 0 582 580 1168 580 1168 2 1 8 6 0,125 simple NA 4 154158520 154158757 4 154245076 154245306 9853750 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 0 597 593 1215 593 1216 4 8 1 14 0,516129 simple NA 4 154181158 154181407 4 154182574 154182771 9853832 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 16 375 371 548 173 1348 4 9 18 8 0,409091 simple NA 4 154853254 154853461 4 155177684 155178052 9858301 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_6_T 354 528 75 354 174 533 0 8 9 12 0,432432 extreme_oneoff LUSC_6_T;chainID=3 4 155152472 155152688 4 155177818 155178051 9860679 15 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_6_T 0 643 642 753 110 758 1 8 15 14 0,355556 extreme_oneoff LUSC_6_T;chainID=3 4 155794606 155794853 4 155798444 155798699 9865858 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 627 793 0 628 165 805 1 4 16 8 0,25 simple NA 4 159425836 159426018 4 159467335 159467525 9893704 6 + - 0 0 1 1 150 111 1 0 1 DEL cancer_singleSample BRCA_8_T 20 436 449 551 103 621 -13 22 2 122 0,261905 simple NA 4 159537978 159538149 4 159539939 159540166 9894372 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 159621946 159622159 4 159905772 159905950 9894868 4 + - 0 0 1 1 150 125 1 0 1 DEL cancer_singleSample GBM_2_T 319 813 5 323 314 818 4 5 11 108 0,0775194 simple NA 4 162352153 162352404 4 162393619 162393819 9915107 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 0 616 615 833 217 836 1 6 22 14 0,25 simple NA 4 162394394 162394573 4 162535132 162535294 9915340 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 539 772 15 540 232 772 1 4 14 14 0,222222 simple NA 4 162599994 162600151 4 162602301 162602506 9916896 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 11 379 376 719 340 736 3 7 4 8 0,538462 simple NA 4 162941762 162942040 4 163189447 163189764 9919200 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_2_T 107 214 212 616 105 645 2 11 15 17 0,407407 simple NA 4 164512601 164512825 4 164514644 164514840 9931514 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 0 335 330 914 330 914 5 5 0 0 1 simple NA 4 166732363 166732660 4 166734256 166734562 9948294 28 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 609 610 916 307 916 -1 15 5 5 0,75 simple NA 4 167084783 167084956 4 167086964 167087121 9951446 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 167106697 167106894 4 167113007 167113234 9951653 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 0 608 607 999 391 1022 1 3 16 15 0,162162 simple NA 4 168462793 168462995 4 168476004 168476237 9962871 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_1_T 83 357 367 553 187 553 -10 9 12 9 0,461538 simple NA 4 169812334 169812559 4 169835546 169835730 9972740 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 19 232 231 846 212 846 1 12 18 20 0,387097 simple NA 4 170487573 170487735 4 170488442 170488594 9977552 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 171409853 171409977 4 171410501 171410615 9984888 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 171889684 171889899 4 171892296 171892516 9989025 12 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 605 603 1212 603 1212 2 15 6 0 0,833333 simple NA 4 174356695 174356858 4 174361023 174361162 10006529 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_14_T 307 521 68 307 214 546 0 15 13 17 0,5 simple NA 4 174572784 174572897 4 174599511 174599658 10007273 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_14_T 0 638 636 709 71 709 2 NA NA NA NA simple NA 4 176852664 176852892 4 176855848 176856092 10021110 9 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 652 964 0 656 308 982 4 6 3 12 0,444444 simple NA 4 179461161 179461381 4 179502331 179502549 10037216 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 75 215 213 750 138 750 2 10 2 17 0,512821 simple NA 4 180108938 180109021 4 180113837 180114112 10041199 3 + - 0 0 1 1 150 139 1 0 1 DEL cancer_singleSample GBM_10_T 0 547 545 1131 545 1131 2 2 2 2 0,5 simple NA 4 180599855 180600003 4 180602124 180602288 10044564 5 + - 0 0 1 1 150 58 1 0 1 DEL cancer_singleSample BRCA_6_T 452 1091 0 455 452 1091 3 8 8 3 0,592593 simple NA 4 181762796 181762989 4 181970284 181970483 10051935 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 183290194 183290345 4 183969341 183969522 10061178 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 4 184393002 184393138 4 184393630 184393859 10066536 4 + - 0 0 1 1 125 150 1 0 1 DEL cancer_singleSample BRCA_1_T 624 1126 0 626 500 1146 2 7 5 3 0,636364 simple NA 4 187010061 187010344 4 187100868 187101201 10078304 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_3_T 571 712 0 577 135 721 6 4 20 13 0,195122 simple NA 4 187156140 187156407 4 187159420 187159684 10078828 17 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 425 961 3 425 422 992 0 11 6 6 0,647059 simple NA 4 187566321 187566493 4 187626453 187626617 10081236 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 111 480 14 111 97 528 0 7 4 18 0,388889 simple NA 4 187668107 187668344 4 187669861 187670133 10081525 28 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 577 799 0 580 219 834 3 20 15 8 0,634921 simple NA 4 190344467 190344701 4 190349095 190349368 10097888 20 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 623 964 0 615 342 972 -8 13 3 2 0,83871 simple NA 4 190632592 190632818 4 190637517 190637776 10105454 17 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 485 1030 24 491 461 1045 6 13 20 44 0,288889 simple NA 5 37049 37175 5 39827 39988 11683279 4 - + 1 0 1 1 108 150 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 3414391 3414566 6 4407313 4407457 12147716 6 + - 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T 434 660 42 432 227 684 -2 10 21 24 0,307692 simple NA 5 3664861 3664994 5 3666777 3666901 11681080 3 + - 0 0 1 1 53 127 1 0 1 DEL cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 3726445 3726661 5 3831497 3831730 11684703 6 - + 2 1 1 1 144 150 1 0 1 DUP cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 4256694 4256845 5 19607433 19607561 11721958 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 76 73 610 73 638 3 5 36 35 0,123457 mild_stepwise LUSC_11_T;chainID=7 5 4259663 4259921 5 4268645 4268940 11722108 27 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 610 617 679 63 680 -7 NA NA NA NA simple NA 5 4423955 4424128 5 6206200 6206390 11734456 10 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 652 728 0 652 76 933 0 6 29 13 0,222222 simple NA 5 4994911 4995040 5 6176333 6176501 11799726 4 + - 0 1 1 1 150 113 1 0 1 INTRA cancer_singleSample LUAD_3_T 0 610 609 814 204 814 1 5 18 15 0,232558 simple NA 5 5255773 5255933 8 80636235 80636384 12219618 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_9_T;chainID=1 5 5255938 5256110 8 80914657 80914897 12219619 7 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_9_T;chainID=1 5 5256107 5256259 8 80643186 80643405 12219620 4 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_9_T;chainID=1 5 6405780 6405920 5 23138010 23138097 11894396 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 6552748 6552908 5 6606780 6606988 11902818 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample READ_2_T 599 980 0 601 379 980 2 13 21 22 0,376812 simple NA 5 6638794 6638923 5 6738023 6738117 11907971 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 201 486 485 723 237 723 1 6 29 25 0,181818 simple NA 5 7275324 7275414 5 45449961 45450128 11957243 3 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_6_T 0 614 609 702 88 741 5 8 4 18 0,421053 simple NA 5 7275509 7275659 5 45449994 45450214 11957253 6 - + 0 0 1 1 150 110 1 0 1 INTRA cancer_singleSample OV_6_T 236 340 19 234 105 360 -2 4 4 14 0,307692 simple NA 5 8824477 8824718 5 8825206 8825425 12055418 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 14 152 174 781 139 781 -22 0 32 11 0 simple NA 5 10601120 10601242 5 39846965 39847102 11067796 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T 0 710 709 1055 345 1058 1 2 21 15 0,1 simple NA 5 11196183 11196382 X 11953204 11953418 2503946 7 + + 0 0 1 1 150 90 1 0 1 INTER cancer_singleSample LUSC_11_T 0 615 612 815 200 847 3 3 35 38 0,0759494 simple NA 5 15798958 15799157 5 15871529 15871699 11415034 4 + - 0 0 1 1 150 49 1 0 1 DEL cancer_singleSample BRCA_4_T 102 738 23 103 79 738 1 10 26 30 0,263158 simple NA 5 16221817 16222073 5 16226384 16226630 11446534 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 16426582 16426796 5 16428349 16428587 11462186 16 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 16 437 435 616 179 616 2 10 48 43 0,18018 simple NA 5 17306807 17307049 5 17310256 17310542 11509458 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 155 515 3 158 152 547 3 3 8 17 0,193548 simple NA 5 17646214 17646364 5 36645845 36645987 11530749 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 10 241 236 352 111 381 5 8 45 30 0,175824 simple NA 5 17908110 17908319 5 17912283 17912468 11539204 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 366 502 23 368 134 510 2 12 6 9 0,615385 simple NA 5 19081973 19082130 7 96475917 96476017 12173300 3 - - 0 1 1 1 74 150 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 19607436 19607618 5 55824312 55824467 11556047 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_11_T;chainID=7 5 20218303 20218518 5 20235078 20235320 11561173 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 8 147 146 472 138 472 1 13 33 39 0,265306 simple NA 5 21374241 21374367 8 130206106 130206251 12214026 6 + - 0 0 1 1 78 150 1 0 1 INTER cancer_singleSample BRCA_2_T 234 377 375 607 141 625 2 14 8 16 0,538462 simple NA 5 21741547 21741717 5 21754479 21754680 11576844 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T 673 802 0 678 124 802 5 9 28 28 0,243243 simple NA 5 22631313 22631533 5 22648660 22648929 11583852 16 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_10_T 227 853 49 230 178 853 3 13 7 13 0,565217 simple NA 5 22778550 22778806 6 147084917 147085100 12145243 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 7 416 413 821 405 875 3 1 8 21 0,0645161 simple NA 5 22797924 22798140 X 151254181 151254378 2507240 5 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T 611 794 0 610 184 812 -1 5 30 22 0,16129 simple NA 5 23990150 23990292 5 24014171 24014294 11593161 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 24068300 24068511 5 24069868 24070094 11593843 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 24221292 24221485 5 24225250 24225493 11594986 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 517 948 21 515 432 970 -2 5 28 31 0,144928 simple NA 5 24809267 24809460 5 27538201 27538425 11599012 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 358 607 0 361 246 611 3 4 38 29 0,106667 simple NA 5 25187734 25187930 8 69393370 69393573 12214486 8 - - 0 0 1 1 150 96 1 0 1 INTER cancer_singleSample LUAD_1_T 405 988 21 406 384 988 1 2 9 11 0,166667 simple NA 5 25415970 25416231 5 25417836 25418133 11604020 7 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 604 600 859 255 872 4 5 30 26 0,151515 simple NA 5 25652464 25652714 5 25653966 25654179 11605852 7 + - 0 0 1 1 141 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 628 627 815 187 839 1 1 63 23 0,0227273 simple NA 5 25692557 25692731 5 25694183 25694360 11606152 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 0 656 653 1207 551 1207 3 3 2 2 0,6 simple NA 5 25893319 25893573 5 25894528 25894797 11607398 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 501 502 604 103 609 -1 7 17 33 0,21875 simple NA 5 26556945 26557137 5 38582458 38582651 11611969 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_8_T 525 939 25 523 415 985 -2 0 12 7 0 simple NA 5 27649967 27650175 5 27652149 27652348 11618760 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 39 375 375 800 336 847 0 7 28 12 0,259259 simple NA 5 28844533 28844795 5 29108566 29108836 11628143 6 - + 4 1 1 1 58 150 1 0 1 DUP cancer_singleSample OV_9_T 113 627 626 855 228 855 1 10 52 14 0,232558 simple NA 5 29761834 29762048 5 29788476 29788786 11635413 23 - + 0 0 1 1 150 144 1 0 1 DUP cancer_singleSample LUAD_3_T 1 601 600 646 45 648 1 NA NA NA NA simple NA 5 31440876 31441105 5 43068048 43068291 11648608 14 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 31896060 31896363 9 127373333 127373601 12227146 4 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 0 611 607 790 179 798 4 5 8 14 0,3125 simple NA 5 32033255 32033486 5 32336311 32336479 11651505 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 548 1085 55 544 490 1117 -4 2 34 34 0,0555556 simple NA 5 32281904 32282148 5 32288860 32289103 11652522 6 - + 0 0 1 1 150 112 1 0 1 DUP cancer_singleSample BRCA_2_T 642 723 0 644 79 741 2 NA NA NA NA simple NA 5 32479596 32479866 5 32515390 32515579 11653552 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 622 1146 0 624 522 1148 2 12 16 13 0,45283 simple NA 5 32666332 32666526 5 33085205 33085412 11654500 3 - + 0 1 1 1 150 101 1 0 1 DUP cancer_singleSample BRCA_4_T 607 711 0 608 103 756 1 10 39 36 0,210526 simple NA 5 32734603 32734701 5 73925173 73925287 11654722 3 + + 0 0 1 1 121 150 1 0 1 INTRA cancer_singleSample OV_10_T 10 529 528 694 165 730 1 0 24 3 0 simple NA 5 33581543 33581710 5 33589727 33589889 11660787 5 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 26 404 400 763 359 771 4 10 12 22 0,37037 simple NA 5 33598998 33599228 8 145522310 145522563 12215652 8 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_9_T 45 361 361 505 144 546 0 11 11 30 0,349206 simple NA 5 33654087 33654286 5 33664483 33665533 11661483 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 33692385 33692655 8 123986558 123986846 12215731 10 + + 1 3 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 35048649 35048841 5 45850818 45850994 11670436 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_9_T 257 876 18 262 239 876 5 5 13 10 0,30303 simple NA 5 36485031 36485232 5 36489635 36489791 11679887 4 - + 0 0 1 1 86 150 1 0 1 DUP cancer_singleSample BRCA_2_T 203 405 19 200 182 626 -3 10 13 0 0,606061 simple NA 5 37624784 37625057 5 37631964 37632230 11686589 25 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 30 193 197 719 164 741 -4 15 37 25 0,326087 simple NA 5 38730774 38731003 5 38734468 38734711 11692922 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 10 614 627 842 216 842 -13 8 4 25 0,355556 simple NA 5 38975066 38975348 5 44073089 44073382 11694347 8 - + 0 0 1 1 150 115 1 0 1 INTRA cancer_singleSample LUSC_13_T 591 735 1 593 142 754 2 3 31 32 0,0869565 simple NA 5 39067945 39068161 5 39077243 39077404 11694978 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 619 643 777 135 779 -24 8 33 32 0,197531 simple NA 5 39511976 39512399 5 39521687 39522270 11697787 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 39688605 39688823 5 39696557 39696776 11699064 8 - + 0 0 1 1 134 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 39727396 39727698 5 39731169 39731475 11699268 20 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 321 932 52 321 269 932 0 14 34 30 0,304348 simple NA 5 39970091 39970310 5 39983685 39983883 11701162 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 40024858 40025091 5 40027049 40027311 11701691 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 34 171 197 479 138 508 -26 4 48 45 0,0792079 simple NA 5 40676362 40676550 5 40718657 40718839 11707179 3 + - 0 0 1 1 108 150 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 40808438 40808556 5 41518600 41518759 11707769 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 42130456 42130690 6 70199026 70199254 12149547 6 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_8_T 398 1029 121 400 277 1033 2 4 29 13 0,16 simple NA 5 42404905 42405171 5 44226104 44226328 11720922 7 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 389 576 3 366 188 576 -23 9 38 48 0,173077 simple NA 5 42752321 42752466 5 42765526 42765684 11723244 12 + - 0 0 1 1 145 134 1 0 1 DEL cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 42884408 42884647 5 42888174 42888417 11724349 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 611 608 777 166 786 3 4 32 42 0,097561 simple NA 5 43236047 43236218 5 43236935 43237095 11725874 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 43563720 43563886 5 43585447 43585621 11728072 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 43796774 43796962 6 63984817 63985024 12150145 4 + + 0 1 1 1 95 150 1 0 1 INTER cancer_singleSample BRCA_1_T 443 853 1 444 409 853 1 8 34 7 0,280702 simple NA 5 44214870 44215165 6 77131280 77131622 12150252 5 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_8_T 240 765 1 241 239 795 1 5 24 30 0,15625 simple NA 5 44364557 44364865 5 44365861 44366142 11735622 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 551 649 15 553 96 816 2 4 16 18 0,190476 simple NA 5 44555470 44555647 9 94411148 94411236 12228619 3 + - 0 2 1 1 150 65 1 0 1 INTER cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 45051986 45052157 5 45052836 45053022 11740857 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 49991704 49991861 5 50120460 50120604 11799974 12 - - 0 0 1 1 149 150 1 0 1 INV cancer_singleSample OV_3_T 0 584 583 1168 583 1168 1 2 5 18 0,148148 simple NA 5 50467568 50467858 5 50606777 50607009 11803442 19 - - 1 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 50905578 50905756 5 94719609 94719814 11806694 9 + - 1 2 1 1 145 150 1 0 1 INTRA cancer_singleSample OV_4_T 690 1135 0 694 441 1154 4 13 10 10 0,565217 simple NA 5 51066660 51066800 5 51386907 51387035 11808110 3 + - 0 0 1 1 150 104 1 0 1 DEL cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 51960122 51960340 5 51985045 51985204 11814838 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 121 475 471 577 102 577 4 7 34 29 0,181818 simple NA 5 52311032 52311218 5 52326821 52327040 11817254 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 483 937 54 482 429 992 -1 5 20 28 0,172414 simple NA 5 52407381 52407545 5 57270590 57270809 11818091 5 + - 0 3 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T 612 994 3 612 382 1012 0 8 3 7 0,615385 simple NA 5 53619727 53619934 5 53631746 53631977 11825963 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 401 767 7 403 364 825 2 5 11 13 0,294118 simple NA 5 54611896 54612097 5 54622281 54622869 11832255 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 54915609 54915860 6 169307863 169308098 12163571 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_19_T 605 870 0 609 261 909 4 1 10 14 0,0769231 mild_oneoff GBM_19_T;chainID=2 5 54920614 54920805 6 117280031 117280226 12163572 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_19_T 608 1235 0 610 608 1235 2 7 18 9 0,341463 mild_oneoff GBM_19_T;chainID=2 5 55680321 55680480 5 130542558 130542702 11837558 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_10_T 408 991 0 412 408 991 4 7 12 7 0,424242 simple NA 5 55828520 55828755 5 55986805 55987061 11838225 60 + + 1 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_11_T;chainID=7 5 56473794 56474096 5 56514410 56514648 11842310 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 45 354 354 744 309 746 0 12 17 12 0,45283 simple NA 5 56671471 56671752 5 57769654 57769920 11843700 19 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 189 304 301 872 112 872 3 24 34 10 0,521739 mild_stepwise BRCA_4_T;chainID=7 5 56684755 56685005 5 56868341 56868568 11843827 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 607 995 0 609 386 1016 2 16 37 34 0,31068 mild_stepwise BRCA_4_T;chainID=7 5 56843337 56843598 5 57764261 57764498 11844850 9 + - 0 0 1 1 84 150 1 0 1 DEL cancer_singleSample BRCA_4_T 606 756 0 608 148 758 2 26 39 28 0,436975 mild_stepwise BRCA_4_T;chainID=7 5 56874479 56874747 5 57090093 57090327 11845124 7 - + 0 2 1 1 150 150 1 0 1 DUP cancer_singleSample OV_9_T 603 1019 0 608 411 1033 5 5 17 7 0,294118 simple NA 5 57087920 57088047 5 57097618 57097795 11846816 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 0 652 649 1125 473 1138 3 6 17 23 0,230769 simple NA 5 57950101 57950302 5 83429649 83429918 11852429 5 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 58177533 58177761 6 169610964 169611187 12164237 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_19_T 615 1222 0 615 607 1222 0 4 14 11 0,242424 mild_oneoff GBM_19_T;chainID=2 5 58203481 58203630 5 58209721 58209898 11853928 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 58242866 58243181 5 58252637 58253627 11854104 3 + + 1 0 1 1 150 107 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 58352496 58352648 6 108125756 108125903 12164265 5 + + 0 3 1 1 102 150 1 0 1 INTER cancer_singleSample GBM_19_T 0 656 654 1116 460 1118 2 6 17 13 0,285714 simple NA 5 58384786 58384957 5 58511832 58511962 11855025 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 7 323 321 997 314 997 2 3 21 9 0,166667 simple NA 5 58520975 58521163 5 58638175 58638386 11856038 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 0 633 630 1244 611 1244 3 4 11 16 0,228571 simple NA 5 58876156 58876509 5 59104313 59104596 11858630 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 13 543 538 874 331 889 5 5 17 14 0,243902 simple NA 5 58933726 58933935 5 59016554 59016740 11859053 4 + + 2 2 1 1 150 139 1 0 1 INV cancer_singleSample OV_1_T 0 602 600 1270 600 1270 2 5 8 11 0,344828 simple NA 5 59116930 59117106 5 59236445 59236639 11860251 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T 632 724 0 626 93 739 -6 7 4 18 0,388889 simple NA 5 59170214 59170367 5 59180846 59181004 11860663 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T 0 605 595 1259 595 1259 10 5 17 16 0,232558 mild_oneoff READ_1_T;chainID=2 5 59207514 59207637 5 59454830 59454947 11860858 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff READ_1_T;chainID=2 5 59233510 59233625 5 59522259 59522434 11860993 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T 0 646 646 1078 432 1130 0 5 6 12 0,357143 mild_oneoff READ_1_T;chainID=2 5 59602183 59602808 5 59613432 59614243 11863666 3 - - 0 0 1 1 150 76 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 59615791 59616029 5 60080214 60080416 11863859 8 - + 0 0 1 1 48 150 1 0 1 DUP cancer_singleSample OV_5_T 539 783 8 537 245 784 -2 3 6 13 0,24 simple NA 5 60527057 60527321 5 60639598 60639797 11869973 15 - + 0 1 1 1 144 141 1 0 1 DUP cancer_singleSample OV_6_T 0 582 579 686 104 686 3 4 14 13 0,228571 simple NA 5 62118859 62119000 7 88998873 88999056 12206891 5 - - 0 0 1 1 45 150 1 0 1 INTER cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 62258741 62258918 5 62260705 62260867 11880359 6 + - 0 0 1 1 134 150 1 0 1 DEL cancer_singleSample BRCA_2_T 640 1277 0 642 635 1311 2 7 2 8 0,583333 simple NA 5 62540483 62540611 5 62544157 62544340 11882409 4 + - 1 2 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 64051873 64052089 5 64052629 64052854 11894369 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 65239406 65239677 5 65298420 65298698 11901407 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 26 271 266 870 240 872 5 6 10 18 0,3 simple NA 5 67342630 67342796 5 67346877 67347128 11914630 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 585 1027 0 587 440 1064 2 5 16 6 0,3125 simple NA 5 67836501 67836639 5 67839522 67839655 11917478 4 + - 0 0 1 1 150 50 1 0 1 DEL cancer_singleSample LUSC_13_T 492 689 16 493 196 722 1 4 13 8 0,275862 simple NA 5 72723263 72723506 5 72727543 72727724 11957172 9 + - 0 0 1 1 141 150 1 0 1 DEL cancer_singleSample OV_10_T 573 1202 0 578 573 1202 5 7 0 0 1 simple NA 5 75269807 75270049 5 75275324 75275620 11972644 6 - + 0 2 1 1 150 128 1 0 1 DUP cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 75888205 75888410 5 75893032 75893266 11976947 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 621 619 1224 603 1224 2 9 9 7 0,529412 simple NA 5 76926566 76926677 5 105488404 105488625 11982878 4 + + 2 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_6_T 0 583 583 1167 583 1167 0 3 1 3 0,6 simple NA 5 76926691 76926886 5 105488658 105488893 11982879 5 - - 4 0 1 1 132 150 1 0 1 INTRA cancer_singleSample OV_6_T 756 801 0 756 45 840 0 NA NA NA NA simple NA 5 77624003 77624172 5 77631608 77631812 11986226 4 + - 0 0 1 1 120 150 1 0 1 DEL cancer_singleSample BRCA_7_T 39 448 445 689 241 801 3 5 9 8 0,37037 simple NA 5 78428838 78429128 5 78432678 78432899 11989941 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 174 782 8 175 166 782 1 5 13 4 0,37037 simple NA 5 80215207 80215402 5 80243220 80243420 12000067 8 - + 1 1 1 1 150 124 1 0 1 DUP cancer_singleSample OV_10_T 222 829 0 227 222 829 5 5 6 2 0,555556 simple NA 5 80453420 80454319 5 80463858 80464596 12001543 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 80505700 80505971 5 80509913 80510121 12001746 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 606 1025 3 607 418 1044 1 3 10 10 0,230769 simple NA 5 80959894 80960120 5 80963851 80964115 12004222 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 2 281 276 837 274 862 5 11 18 16 0,392857 simple NA 5 82182221 82182452 5 82275688 82276287 12011829 8 - + 0 0 1 1 148 124 1 0 1 DUP cancer_singleSample LUAD_3_T 131 731 23 133 108 733 2 8 8 6 0,533333 simple NA 5 82560984 82561181 5 82643361 82643545 12014362 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 550 984 31 552 432 1032 2 1 15 11 0,0714286 simple NA 5 82879240 82879429 5 121188760 121188920 12016506 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 83757473 83757591 5 83760883 83761027 12022828 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 610 899 0 622 277 899 12 8 19 23 0,275862 simple NA 5 84026606 84026797 5 85821987 85822294 12024651 5 + + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T 611 947 10 611 336 949 0 5 15 7 0,3125 simple NA 5 86124654 86124775 5 86129442 86129584 12039549 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 681 680 1341 660 1341 1 7 10 9 0,424242 simple NA 5 86239174 86239329 5 86244825 86244994 12040478 3 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 269 948 4 267 264 948 -2 5 3 4 0,588235 simple NA 5 86666219 86666383 5 133328997 133329125 12043362 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 87809948 87810066 5 116481459 116481665 12052684 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 88926801 88926966 5 88929771 88929951 12060812 4 + - 0 1 1 1 71 98 1 0 1 DEL cancer_singleSample BRCA_4_T 0 633 634 1008 375 1022 -1 4 4 17 0,275862 simple NA 5 89769648 89769875 5 94957198 94957386 12067401 3 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_9_T 201 705 1 207 200 721 6 1 5 2 0,222222 simple NA 5 90504943 90505077 5 90679591 90679829 12071926 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 247 837 25 250 222 837 3 4 4 8 0,4 simple NA 5 90574136 90574238 5 90575609 90575724 12072473 3 - + 0 0 1 1 150 52 1 0 1 DUP cancer_singleSample GBM_7_T 1 223 222 541 221 626 1 4 6 2 0,5 simple NA 5 92948103 92948238 5 138102980 138103200 12088554 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 93756900 93757055 5 94011069 94011261 12093975 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 672 1251 1253 1397 145 1403 -2 9 3 7 0,642857 simple NA 5 94955938 94956117 5 125951264 125951430 12101510 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_9_T 0 626 625 727 101 770 1 4 3 10 0,380952 simple NA 5 95049506 95049708 5 95239326 95239472 12101920 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 634 816 11 633 183 823 -1 0 16 17 0 simple NA 5 95569340 95569508 5 95790589 95790783 12104803 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 624 1222 0 627 595 1222 3 3 2 4 0,5 simple NA 5 95994756 95995014 5 96308591 96308819 12107464 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 67 408 408 1017 341 1017 0 12 18 8 0,48 simple NA 5 96555573 96555691 5 96860866 96860981 12110957 4 + - 0 0 1 1 77 55 1 0 1 DEL cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 99532175 99532385 5 100945634 100945842 12134793 10 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample COAD_1_T 609 784 0 616 168 784 7 6 14 11 0,324324 simple NA 5 102489052 102489216 5 102493220 102493509 11044965 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 0 600 607 1211 601 1211 -7 3 8 12 0,230769 simple NA 5 102971006 102971229 5 102977915 102978094 11048266 9 - + 2 3 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 0 611 612 1218 607 1218 -1 6 17 11 0,3 simple NA 5 103557887 103558154 5 103559068 103559378 11051265 8 + - 2 2 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 103991904 103992071 5 104001735 104002042 11054105 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T 286 638 44 292 242 685 6 0 21 26 0 simple NA 5 104282564 104282771 5 118950228 118950418 11056305 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T 479 713 435 482 44 728 3 5 12 6 0,357143 simple NA 5 104508182 104508384 5 104669439 104669647 11058120 6 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_10_T 18 176 172 792 154 795 4 9 11 18 0,382979 simple NA 5 109479055 109479216 7 141025880 141026033 12170242 4 - + 1 0 1 1 55 150 1 0 1 INTER cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 112707093 112707329 X 120298367 120298660 2503990 4 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 0 610 607 1003 393 1041 3 4 16 10 0,235294 simple NA 5 115120727 115120852 5 115129060 115129186 11130382 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 426 1023 17 428 409 1063 2 8 26 12 0,296296 simple NA 5 116698378 116698603 5 116702552 116702773 11141046 3 + - 0 4 1 1 150 150 1 0 1 DEL cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 116832071 116832256 5 144627721 144627895 11141977 6 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 118054332 118054448 5 118178670 118178808 11151766 3 - + 0 0 1 1 150 84 1 0 1 DUP cancer_singleSample BRCA_5_T 280 705 7 282 273 736 2 10 11 23 0,37037 simple NA 5 118100582 118100856 5 118102887 118103152 11152249 13 + - 1 1 1 1 146 150 1 0 1 DEL cancer_singleSample OV_4_T 0 483 481 704 221 738 2 9 19 8 0,4 simple NA 5 119840361 119840469 5 143565927 143566019 11163556 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_3_T 0 646 645 817 171 817 1 2 9 1 0,285714 simple NA 5 119848536 119848753 5 174668252 174668386 11163633 8 + - 0 0 1 1 147 139 1 0 1 INTRA cancer_singleSample OV_3_T 32 398 395 696 298 716 3 2 15 10 0,137931 simple NA 5 121181993 121182166 5 121192820 121192982 11175069 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample READ_2_T 0 642 638 742 100 780 4 14 21 14 0,444444 simple NA 5 121203921 121204049 5 121204597 121204715 11175227 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 723 822 0 725 97 822 2 NA NA NA NA simple NA 5 121215934 121216211 5 121219282 121219562 11175273 39 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 426 861 31 426 395 929 0 24 22 19 0,539326 simple NA 5 123703840 123704024 5 123964115 123964308 11192953 7 - + 1 2 1 1 150 144 1 0 1 DUP cancer_singleSample OV_5_T 671 839 0 677 162 863 6 5 14 20 0,227273 simple NA 5 125075459 125075565 5 134338305 134338417 11202775 3 - + 0 2 1 1 41 37 1 0 1 INTRA cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 127035311 127035524 5 127054028 127054229 11216284 12 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_4_T 241 860 24 249 217 860 8 12 16 23 0,380952 mild_oneoff BRCA_4_T;chainID=8 5 127054457 127054597 5 127179016 127179111 11216385 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff BRCA_4_T;chainID=8 5 127055292 127055483 5 127178781 127179015 11216393 8 - + 0 1 1 1 150 111 1 0 1 DUP cancer_singleSample BRCA_4_T 250 358 361 824 109 825 -3 10 9 10 0,512821 mild_oneoff BRCA_4_T;chainID=8 5 127091749 127091970 5 128373930 128374230 11216538 8 - + 2 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T 1 474 471 691 217 707 3 3 53 9 0,0882353 simple NA 5 128549644 128549913 5 128553862 128554168 11227613 21 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 611 615 1224 610 1224 -4 15 3 4 0,810811 simple NA 5 130181081 130181327 5 130207569 130207792 11241356 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 610 608 967 357 970 2 13 30 26 0,317073 simple NA 5 130381985 130382225 5 130465526 130465775 11242657 12 + - 0 0 1 1 147 143 1 0 1 DEL cancer_singleSample LUAD_2_T 311 922 5 310 306 922 -1 6 14 10 0,333333 simple NA 5 131753435 131753684 5 131758949 131759204 11250993 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 234 842 64 235 170 842 1 9 25 22 0,276923 simple NA 5 132336994 132337166 5 132406385 132406530 11253732 5 - + 2 0 1 1 135 129 1 0 1 DUP cancer_singleSample BRCA_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 133442824 133443001 5 133445051 133445303 11259494 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 606 794 0 607 187 816 1 0 1 9 0 simple NA 5 133962144 133962281 5 133963008 133963226 11262097 6 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 3 392 386 434 42 461 6 NA NA NA NA simple NA 5 134105890 134106097 5 134958860 134959048 11262855 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 622 707 0 618 86 713 -4 NA NA NA NA simple NA 5 134737342 134737610 5 134748440 134748647 11265545 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 559 991 14 565 426 1006 6 14 22 16 0,424242 simple NA 5 134864877 134865147 5 134866959 134867197 11266007 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 610 848 0 614 234 872 4 4 10 8 0,307692 simple NA 5 135010522 135010743 5 135023203 135023432 11266723 9 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 135845707 135846014 5 135847170 135847460 11271456 17 + - 1 1 1 1 146 150 1 0 1 DEL cancer_singleSample OV_1_T 609 780 0 610 170 787 1 12 9 13 0,521739 simple NA 5 135932933 135933180 5 169386584 169386781 11272585 14 - - 1 0 1 1 148 145 1 0 1 INTRA cancer_singleSample OV_3_T 322 651 650 829 178 831 1 9 0 4 0,818182 simple NA 5 137446217 137446435 5 137450030 137450275 11283936 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 137943917 137944179 5 163007140 163007410 11286625 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 609 606 857 248 866 3 1 9 16 0,0740741 extreme_stepwise LUSC_11_T;chainID=1 5 137971801 137972046 5 138188315 138188551 11286774 7 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_11_T 0 618 632 860 229 885 -14 2 23 0 0,148148 simple NA 5 138453322 138453506 5 138457409 138457608 11288905 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 472 581 24 474 107 592 2 17 14 18 0,515152 simple NA 5 138635442 138635718 5 138670759 138670991 11289710 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 101 562 65 103 36 666 2 1 21 14 0,0540541 simple NA 5 138661174 138661351 5 138665027 138665205 11289808 11 + - 0 0 1 1 141 141 1 0 1 DEL cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 138880619 138880831 5 138882169 138882350 11290657 3 + - 0 0 1 1 128 104 1 0 1 DEL cancer_singleSample BRCA_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 139005400 139005593 5 139033883 139034125 11291328 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 139066019 139066212 5 179361553 179361727 11291417 8 - + 0 0 1 1 138 132 1 0 1 INTRA cancer_singleSample GBM_8_T 38 242 239 486 201 486 3 8 17 9 0,380952 simple NA 5 139457143 139457313 5 178885623 178885785 11293295 6 + - 0 0 1 1 121 108 1 0 1 INTRA cancer_singleSample GBM_8_T 1 369 378 502 125 516 -9 0 9 11 0 simple NA 5 140425463 140425681 5 166124054 166124147 11298399 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_6_T 0 514 513 1151 513 1151 1 1 3 9 0,142857 simple NA 5 140591947 140592106 5 141173958 141174117 11298877 3 - - 1 5 1 1 150 150 1 0 1 INV cancer_singleSample OV_5_T 57 114 121 374 58 406 -7 3 13 2 0,285714 simple NA 5 141113539 141113751 5 141114494 141114711 11301094 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_16_T 0 606 606 1215 606 1215 0 8 21 8 0,355556 simple NA 5 141176440 141176667 5 141201034 141201211 11301277 7 + + 1 1 1 1 150 150 1 0 1 INV cancer_singleSample OV_5_T 644 712 0 645 67 741 1 NA NA NA NA simple NA 5 141386419 141386559 5 141390292 141390398 11301903 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 216 686 32 216 184 700 0 0 10 14 0 simple NA 5 141950256 141950529 5 142713876 142714119 11304239 8 - + 0 1 1 1 150 31 1 0 1 DUP cancer_singleSample OV_9_T 14 589 587 835 246 836 2 7 11 56 0,17284 simple NA 5 142096419 142096709 5 142102752 142103021 11304943 21 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 11 553 551 833 280 860 2 6 17 17 0,26087 simple NA 5 142929370 142929570 5 142933440 142933672 11310640 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 149 462 3 150 146 470 1 11 15 21 0,37931 simple NA 5 145302822 145303040 5 145307165 145307372 11331509 7 - + 0 1 1 1 150 137 1 0 1 DUP cancer_singleSample OV_1_T 614 898 0 615 283 923 1 4 14 22 0,181818 simple NA 5 146182148 146182436 5 146183684 146183959 11336929 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T 2 306 307 917 305 917 -1 5 15 7 0,3125 simple NA 5 148915352 148915455 5 148959979 148960116 11355561 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 601 602 980 379 1026 -1 8 16 26 0,275862 simple NA 5 149934714 149934971 5 149939902 149940217 11359312 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 232 847 14 234 218 847 2 8 10 13 0,410256 simple NA 5 149980866 149980991 5 149987677 149987786 11359442 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 624 821 0 610 198 821 -14 3 20 10 0,166667 simple NA 5 151035006 151035251 5 151048973 151049201 11365383 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 9 478 476 720 242 720 2 9 17 12 0,382979 simple NA 5 152219879 152220057 5 174293891 174294139 11374532 12 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_3_T 584 840 0 586 254 848 2 6 10 7 0,413793 simple NA 5 153119474 153119672 5 153123816 153124027 11382435 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 696 839 554 692 139 1125 -4 3 19 20 0,133333 simple NA 5 154580068 154580352 5 154907696 154907974 11391507 15 - + 2 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_1_T 613 883 0 613 270 883 0 8 15 18 0,326531 simple NA 5 155319994 155320211 5 156880644 156880848 11397424 4 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 428 858 0 430 428 862 2 3 15 14 0,171429 simple NA 5 155320237 155320466 5 156881773 156881967 11397427 6 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 547 1168 17 547 530 1191 0 1 20 20 0,047619 simple NA 5 155765882 155766139 5 155772028 155772274 11400700 11 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 610 713 0 607 104 739 -3 7 8 9 0,451613 simple NA 5 156847100 156847288 5 156849910 156850067 11408063 4 - + 0 1 1 1 45 150 1 0 1 DUP cancer_singleSample BRCA_12_T 618 698 0 620 78 700 2 NA NA NA NA simple NA 5 159544254 159544425 5 159547165 159547406 11425573 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 131 614 614 1103 483 1105 0 0 8 12 0 simple NA 5 160920145 160920290 5 160958637 160959021 11436253 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 657 1297 0 659 638 1297 2 2 8 10 0,181818 simple NA 5 163071019 163071172 5 167720021 167720160 11453081 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 61 548 547 1073 486 1114 1 1 11 2 0,133333 extreme_stepwise LUSC_11_T;chainID=1 5 164905564 164905677 5 165022361 165022460 11466450 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_10_T 580 907 0 581 326 932 1 3 8 5 0,315789 simple NA 5 165486748 165486913 5 165714525 165714706 11470024 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 474 897 54 472 419 899 -2 3 15 3 0,25 simple NA 5 165930553 165930760 5 165939764 165940035 11472894 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 40 602 598 745 143 745 4 6 20 18 0,24 simple NA 5 166246946 166247169 5 166252632 166252900 11474993 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 465 945 0 465 465 945 0 3 19 20 0,133333 simple NA 5 166721971 166722146 5 166723014 166723218 11477532 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 288 696 32 275 244 729 -13 6 8 17 0,324324 simple NA 5 167122514 167122682 5 167124881 167125064 11480044 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 167691230 167691379 5 167770482 167770659 11483403 4 + + 1 0 1 1 79 132 1 0 1 INV cancer_singleSample OV_6_T 151 266 9 149 116 296 -2 7 71 26 0,126126 simple NA 5 167874141 167874381 5 167888001 167888211 11484312 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 595 865 13 599 266 882 4 1 16 10 0,0714286 simple NA 5 169400339 169400539 5 169404363 169404585 11493451 15 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 43 514 513 838 324 851 1 11 7 4 0,666667 simple NA 5 170659885 170660119 5 170708476 170708756 11500751 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 170755552 170755690 5 171519130 171519316 11501150 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 171075554 171075800 5 172727270 172727499 11502172 7 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T 4 605 603 677 72 678 2 NA NA NA NA simple NA 5 171707726 171707842 5 171711257 171711373 11504901 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 59 738 0 62 59 738 3 13 12 0 0,684211 simple NA 5 172922452 172922671 5 172928326 172928458 11508922 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 618 966 0 618 348 970 0 4 21 16 0,177778 simple NA 5 174902726 174902991 5 174928546 174928773 11519448 11 + - 0 0 1 1 149 147 1 0 1 DEL cancer_singleSample GBM_10_T 0 551 548 996 445 996 3 3 6 4 0,375 simple NA 5 175322785 175322936 5 175358152 175358308 11523734 6 - + 0 0 1 1 150 55 1 0 1 DUP cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 175741856 175742070 5 175760195 175760410 11527930 12 + - 0 0 1 1 150 96 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 5 176589023 176589197 5 177426548 177426760 11531135 5 - + 2 1 1 1 132 150 1 0 1 DUP cancer_singleSample OV_5_T 0 599 598 728 129 745 1 5 22 32 0,15625 simple NA 5 176883514 176883760 5 176902344 176902594 11531861 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 0 596 595 981 385 1012 1 4 2 20 0,266667 simple NA 5 177805684 177805910 5 177807499 177807668 11534905 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_7_T 370 860 32 372 338 873 2 3 4 4 0,428571 simple NA 5 180260889 180261153 5 180262738 180262877 11542717 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 0 609 607 863 254 883 2 3 8 20 0,176471 simple NA 6 664728 664939 6 27894499 27894743 13200950 4 - - 0 0 1 1 89 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 0 651 651 986 335 986 0 4 9 8 0,32 simple NA 6 1194456 1194562 6 1207249 1207369 12390453 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 212 838 17 218 195 838 6 6 24 4 0,3 simple NA 6 1618358 1618589 7 130777061 130777196 13472234 3 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T 0 548 547 680 132 772 1 11 12 28 0,354839 simple NA 6 1624966 1625220 7 130785864 130786064 13472241 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 2011252 2011391 6 2170578 2170698 12804300 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 2692505 2692624 6 2810074 2810180 12854828 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 5311488 5311727 6 5392303 5392559 13021206 19 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 605 824 0 608 216 878 3 17 27 26 0,390805 simple NA 6 5315357 5315527 6 27347846 27348044 13021556 7 + + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 73 111 111 730 38 730 0 1 26 13 0,0487805 simple NA 6 5914801 5915058 6 8755573 8755968 13154756 15 - + 0 0 1 1 128 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 642 849 0 639 208 882 -3 8 23 23 0,258065 simple NA 6 6742975 6743057 6 6746597 6746832 13209463 5 + - 0 0 1 1 150 128 1 0 1 DEL cancer_singleSample LUAD_1_T 2 485 482 671 186 671 3 5 16 10 0,277778 simple NA 6 6747564 6747707 6 7540782 7540968 13209888 3 - + 2 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_9_T 18 313 308 438 125 451 5 8 20 19 0,290909 simple NA 6 11604773 11605018 6 20507907 20508168 12364372 9 - + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_4_T 0 275 273 536 261 555 2 13 16 8 0,52 simple NA 6 13191264 13191440 6 51991430 51991640 12497871 10 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 177 608 15 163 149 783 -14 1 24 16 0,047619 simple NA 6 13492067 13492182 6 14613545 14613724 12521885 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 13932186 13932427 6 13934168 13934369 12556739 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 275 937 164 278 111 942 3 6 24 18 0,222222 simple NA 6 15088922 15089184 6 15092159 15092419 12655448 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 16147314 16147558 6 16343830 16344088 12730042 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 262 613 34 262 228 617 0 9 24 22 0,28125 simple NA 6 16614968 16615091 6 16616162 16616288 12759159 3 + - 0 0 1 1 129 150 1 0 1 DEL cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 18272759 18273004 6 65357689 65357888 12788773 11 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 18295264 18295419 6 18298484 18298678 12788895 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 19091240 19091374 6 19117146 19117281 12796585 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_7_T 384 635 32 386 249 635 2 3 11 10 0,222222 simple NA 6 20156622 20156849 6 20158060 20158296 12804533 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 47 439 438 600 161 602 1 14 20 14 0,451613 simple NA 6 20691813 20692046 6 33111279 33111448 12807702 5 + - 0 0 1 1 130 150 1 0 1 INTRA cancer_singleSample OV_10_T 0 602 602 669 67 718 0 6 2 0 0,857143 simple NA 6 20750773 20751041 6 20988567 20988802 12808164 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 21190606 21190822 6 21208153 21208387 12811073 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 21287948 21288197 6 21292958 21293182 12811598 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_2_T 21 427 426 968 405 987 1 1 16 14 0,0625 simple NA 6 21716269 21716369 6 21723608 21723756 12814072 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 332 336 866 333 870 -4 3 13 24 0,139535 simple NA 6 22328469 22328663 6 22330584 22330811 12818014 15 + - 0 0 1 1 148 140 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 24904299 24904612 6 25466147 25466423 12838846 28 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 606 753 0 608 145 764 2 13 30 11 0,38806 simple NA 6 25325012 25325266 6 33406544 33406758 12841583 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_2_T 603 1144 9 604 540 1175 1 0 14 16 0 simple NA 6 25751274 25751560 6 25766745 25767041 12844624 18 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 25752857 25753158 6 27096998 27097347 12844629 5 + + 0 0 1 1 73 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 0 594 595 664 70 664 -1 NA NA NA NA simple NA 6 25953339 25953500 6 56662273 56662492 12846528 9 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_3_T 404 488 0 404 84 521 0 5 18 19 0,212766 simple NA 6 26015237 26015431 6 26116257 26116457 12846910 17 + + 0 0 1 1 141 149 1 0 1 INV cancer_singleSample OV_3_T 54 512 509 1096 455 1096 3 5 10 13 0,30303 simple NA 6 26203721 26203929 6 26205607 26205807 12847717 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 26267386 26267496 6 26268979 26269178 12847940 4 + - 0 2 1 1 150 129 1 0 1 DEL cancer_singleSample OV_6_T 255 789 29 256 226 789 1 5 7 13 0,333333 simple NA 6 27109197 27109471 6 27112897 27113117 12855789 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 28479871 28480085 6 28484734 28484966 12862639 5 - + 0 0 1 1 116 150 1 0 1 DUP cancer_singleSample BRCA_9_T 551 1097 423 551 128 1103 0 6 6 15 0,363636 simple NA 6 28588204 28588399 6 28590929 28591164 12863260 8 + - 0 0 1 1 150 48 1 0 1 DEL cancer_singleSample LUSC_13_T 505 585 0 508 77 635 3 20 21 47 0,37037 simple NA 6 28645862 28646028 6 28650823 28650961 12863464 4 + - 0 0 1 1 150 132 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 29161311 29161535 6 29165162 29165375 12865869 4 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 292 464 8 293 171 473 1 10 6 17 0,465116 simple NA 6 29920325 29920490 X 72681220 72681372 2539393 7 + - 3 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T 664 844 0 666 178 862 2 8 10 6 0,5 simple NA 6 30381921 30382204 6 30383626 30383844 12874582 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 611 782 0 613 169 782 2 6 26 7 0,266667 simple NA 6 31328242 31328513 6 31329365 31329656 12879250 19 + - 0 0 1 1 150 144 1 0 1 DEL cancer_singleSample LUSC_13_T 606 660 0 608 52 664 2 NA NA NA NA simple NA 6 31378617 31378805 6 31473949 31474315 12879558 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 31539267 31539410 6 90164905 90165045 12880309 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_10_T 0 652 649 738 86 738 3 NA NA NA NA simple NA 6 31577371 31577613 6 77704904 77705104 12880520 5 + + 1 0 1 1 150 142 1 0 1 INTRA cancer_singleSample OV_10_T 344 773 127 347 217 779 3 7 2 16 0,4375 simple NA 6 31577681 31577864 6 77704924 77705049 12880523 7 - - 1 0 1 1 150 133 1 0 1 INTRA cancer_singleSample OV_10_T 166 739 0 169 166 749 3 14 3 9 0,7 simple NA 6 31817157 31817306 6 31835355 31835544 12881082 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 33653729 33653921 6 34013362 34013511 12891264 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 588 812 0 590 222 833 2 3 7 17 0,2 simple NA 6 34622326 34622525 6 34630193 34630455 12894409 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 301 816 26 303 275 817 2 5 20 21 0,196078 simple NA 6 36602867 36603108 6 81554422 81554654 12904863 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_10_T 0 645 667 795 129 798 -22 2 7 21 0,125 simple NA 6 38720887 38721107 6 39106035 39106243 12916192 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_9_T 34 635 633 793 158 793 2 8 18 14 0,333333 simple NA 6 39285506 39285644 6 39436715 39436829 12919798 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 343 749 56 348 287 750 5 5 16 10 0,277778 simple NA 6 39689885 39690084 6 39692542 39692785 12922993 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 31 204 217 819 174 819 -13 3 7 20 0,181818 simple NA 6 39705921 39706760 6 39716187 39716601 12923106 3 - - 0 0 1 1 67 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 41153636 41153810 6 41154970 41155174 12933816 7 + - 0 0 1 1 148 150 1 0 1 DEL cancer_singleSample OV_10_T 614 849 0 616 233 888 2 0 2 5 0 simple NA 6 41614011 41614270 6 41776397 41776656 12935649 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 43679423 43679619 6 43691471 43691675 12945224 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 44111860 44112070 6 44117998 44118217 12946817 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 372 604 9 370 233 604 -2 4 22 14 0,181818 simple NA 6 44468788 44469003 6 44480070 44480317 12948404 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T 648 739 3 631 92 746 -17 5 22 19 0,196078 simple NA 6 45097755 45097946 6 45098523 45098725 12952665 4 + - 0 0 1 1 150 99 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 45121680 45121805 6 45131974 45132159 12952823 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 622 675 0 626 49 679 4 NA NA NA NA simple NA 6 45202405 45202651 6 45203231 45203449 12953341 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 198 797 7 202 191 797 4 4 13 9 0,266667 simple NA 6 45664824 45665126 6 47122361 47122639 12956421 10 - + 2 3 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T 0 608 604 799 191 799 4 2 19 17 0,1 simple NA 6 46653562 46653827 6 46708684 46708902 12964536 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 47420188 47420453 6 47489960 47490144 12970805 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 227 370 51 228 142 370 1 4 24 19 0,156863 simple NA 6 47548468 47548723 6 47550394 47550608 12971554 3 + - 0 0 1 1 150 145 1 0 1 DEL cancer_singleSample LUAD_5_T 0 593 589 1057 464 1059 4 4 17 16 0,195122 simple NA 6 48595755 48596037 6 48598751 48599051 12981413 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 260 566 26 263 234 567 3 10 17 23 0,333333 simple NA 6 48725676 48725886 6 54949001 54949280 12982838 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_10_T 602 951 0 603 348 969 1 1 18 24 0,0454545 simple NA 6 49061191 49061342 6 49086262 49086477 12986230 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 333 555 19 334 221 609 1 4 18 12 0,210526 simple NA 6 49216736 49217002 6 51929129 51929343 12987744 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 49832324 49832534 6 49834339 49834574 12992878 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 296 433 61 265 138 486 -31 1 17 19 0,0526316 simple NA 6 52184833 52184977 6 80172199 80172365 13014804 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 31 525 523 703 178 1130 2 5 25 23 0,172414 simple NA 6 52279489 52279667 6 52281208 52281465 13015338 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 69 428 422 1018 353 1018 6 6 5 10 0,444444 simple NA 6 52488435 52488635 6 52489957 52490170 13016694 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 332 574 34 333 241 598 1 11 7 2 0,709677 simple NA 6 52777236 52777529 6 63378706 63378996 13018728 17 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 53694642 53694877 6 53704741 53705003 13025351 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 53700335 53700583 6 53720661 53720881 13025404 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T 0 642 639 1245 603 1245 3 2 29 20 0,0754717 simple NA 6 54515915 54516006 6 54516639 54516824 13034595 3 + - 1 0 1 1 150 108 1 0 1 DEL cancer_singleSample OV_6_T 610 1219 0 610 609 1219 0 1 5 6 0,153846 simple NA 6 54649283 54649511 6 54660630 54660905 13035710 16 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 0 610 629 1007 379 1007 -19 19 20 14 0,527778 simple NA 6 54800771 54800924 6 87437627 87437793 13036922 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_10_T 677 1103 0 662 427 1158 -15 3 14 18 0,157895 simple NA 6 54846647 54846787 6 54849160 54849396 13037329 7 - + 0 1 1 1 149 150 1 0 1 DUP cancer_singleSample OV_4_T 393 766 15 394 372 800 1 7 19 16 0,285714 simple NA 6 55078609 55078842 6 55080359 55080603 13039746 18 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 636 649 777 129 819 -13 14 21 25 0,378378 simple NA 6 57766561 57766670 6 66294337 66294460 13067484 3 - + 0 1 1 1 132 150 1 0 1 INTRA cancer_singleSample BRCA_3_T 249 638 191 248 58 670 -1 15 34 19 0,361446 mild_stepwise BRCA_3_T;chainID=2 6 57767471 57767675 6 67007670 67007915 13067493 6 + - 1 0 1 1 108 150 1 0 1 INTRA cancer_singleSample BRCA_3_T 27 378 376 462 84 477 2 17 27 26 0,390805 mild_stepwise BRCA_3_T;chainID=2 6 62779995 62780283 6 62781303 62781611 13166917 20 + - 0 0 1 1 150 86 1 0 1 DEL cancer_singleSample LUSC_13_T 0 609 602 886 277 913 7 8 27 22 0,246154 simple NA 6 62900494 62900774 8 86073813 86074047 13551926 7 + - 1 3 1 1 150 150 1 0 1 INTER cancer_singleSample OV_9_T 0 613 615 939 325 944 -2 4 12 13 0,242424 simple NA 6 63355668 63355943 6 63380088 63380386 13172506 14 - - 0 0 1 1 143 150 1 0 1 INV cancer_singleSample LUAD_5_T 603 800 0 605 195 812 2 12 10 12 0,521739 simple NA 6 63982081 63982248 6 63998215 63998380 13179709 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 10 374 371 509 135 519 3 12 26 16 0,363636 simple NA 6 65551578 65551846 6 65553938 65554185 13192449 15 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 66296039 66296151 6 70165939 70166053 13199508 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_3_T 186 403 23 185 163 423 -1 13 17 17 0,433333 mild_stepwise BRCA_3_T;chainID=2 6 66658841 66659114 6 66669573 66669881 13202677 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 615 1217 0 618 599 1217 3 8 25 24 0,246154 simple NA 6 66734407 66734645 6 66738100 66738338 13203246 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 19 134 136 579 116 587 -2 19 8 16 0,612903 simple NA 6 67353233 67353376 9 130989316 130989437 13575516 3 + - 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T 606 1084 2 606 478 1085 0 11 36 1 0,372881 simple NA 6 67354180 67354361 9 130989313 130989441 13575517 4 + + 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 68212584 68212889 X 142040243 142040514 2568385 12 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T 29 151 149 522 120 522 2 11 37 21 0,275 simple NA 6 68238655 68238887 6 68809610 68809829 13216681 16 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T 211 532 34 208 175 554 -3 7 21 21 0,25 simple NA 6 68909698 68909748 9 101560727 101560796 13575726 4 - + 1 0 1 1 36 117 1 0 1 INTER cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 71720761 71720939 6 71744960 71745177 13243862 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 164 344 341 433 89 474 3 6 14 17 0,27907 simple NA 6 72322217 72322433 6 72326031 72326200 13248685 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 612 703 0 612 91 706 0 NA NA NA NA simple NA 6 72901829 72902097 6 72904869 72905133 13253517 19 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 31 587 591 852 262 852 -4 9 9 15 0,428571 simple NA 6 73624798 73625019 6 73625496 73625722 13258940 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 75 491 491 630 139 637 0 7 12 7 0,424242 simple NA 6 74344978 74345133 6 74346141 74346243 13263084 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 34 238 244 846 205 868 -6 2 23 3 0,133333 simple NA 6 74660747 74661058 6 141399010 141399313 13264687 9 + - 2 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T 42 174 173 339 131 339 1 4 21 20 0,163265 simple NA 6 75120387 75120614 6 75121158 75121360 13268226 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 580 771 0 580 191 771 0 11 11 1 0,647059 simple NA 6 75134256 75134420 6 75193072 75193206 13268416 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 0 734 731 1131 397 1143 3 10 29 28 0,25974 simple NA 6 75556267 75556476 6 75730455 75730671 13272506 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 48 393 389 774 341 794 4 5 16 19 0,222222 simple NA 6 76324436 76324648 6 76425598 76425804 13278041 8 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 76325463 76325614 6 88192802 88192970 13278042 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 76484337 76484539 6 76535292 76535460 13279039 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 108 702 11 110 97 735 2 16 18 15 0,492308 simple NA 6 76853287 76853389 6 87434334 87434462 13281963 3 - - 0 0 1 1 119 150 1 0 1 INTRA cancer_singleSample LUSC_10_T 389 770 27 395 362 825 6 3 20 13 0,153846 simple NA 6 77214422 77214766 6 77224479 77225924 13285640 3 + + 0 0 1 1 120 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 79469830 79469967 6 79494937 79495078 13304834 4 + - 1 0 1 1 89 64 1 0 1 DEL cancer_singleSample LUAD_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 79780271 79780414 6 79781867 79782012 13306956 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T 0 640 639 1008 368 1018 1 7 14 11 0,358974 simple NA 6 80430000 80430226 6 80434921 80435179 13311796 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 81207770 81207921 6 83104732 83104885 13317385 5 - + 0 1 1 1 132 150 1 0 1 INTRA cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 81220220 81220442 6 83326923 83327141 13317512 3 - + 0 0 1 1 84 150 1 0 1 INTRA cancer_singleSample LUAD_4_T 1 290 287 965 286 965 3 1 13 8 0,0869565 simple NA 6 81477888 81478145 6 81486544 81486812 13320082 17 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 637 915 0 606 279 938 -31 17 13 16 0,539683 simple NA 6 81869928 81870089 6 81893933 81894050 13323562 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 547 1211 59 549 488 1211 2 7 4 15 0,424242 simple NA 6 82485488 82485705 6 82490090 82490259 13329435 8 + - 0 0 1 1 150 60 1 0 1 DEL cancer_singleSample LUSC_13_T 501 778 2 502 276 790 1 10 8 6 0,588235 simple NA 6 83698792 83698928 6 83700935 83701193 13339958 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 0 585 580 1041 456 1041 5 2 13 7 0,166667 simple NA 6 84054810 84055000 6 84067988 84068222 13342650 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 44 193 189 445 145 459 4 7 18 21 0,264151 simple NA 6 85754486 85754670 6 85757354 85757745 13355512 9 + - 3 2 1 1 144 150 1 0 1 DEL cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 87010203 87010413 6 87021902 87022905 13366148 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 89154655 89154805 6 89163834 89164040 13382116 5 - + 1 0 1 1 142 150 1 0 1 DUP cancer_singleSample OV_3_T 289 880 28 288 261 880 -1 1 11 7 0,1 simple NA 6 89837960 89838066 6 90493094 90493194 13386794 4 + - 0 2 1 1 55 150 1 0 1 DEL cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 91214148 91214324 6 91217717 91217979 13395043 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 92987081 92987190 6 92993554 92993691 13411214 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 645 972 0 645 327 994 0 6 11 9 0,375 simple NA 6 93227774 93228036 6 93229633 93229914 13413719 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 608 609 724 116 772 -1 4 0 19 0,296296 simple NA 6 96575867 96576019 6 96579172 96579293 13441054 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 607 1264 0 608 607 1264 1 8 17 17 0,32 simple NA 6 99457466 99457602 6 99461074 99461239 13465166 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 99513109 99513300 6 99514320 99514478 13465783 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 612 1120 0 614 506 1130 2 2 11 17 0,125 simple NA 6 100002251 100002486 6 100003569 100003792 12242239 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 101133199 101133441 6 101139142 101139385 12249958 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_11_T 0 610 607 1224 607 1224 3 1 8 1 0,181818 simple NA 6 101961797 101961918 6 102049488 102049613 12255825 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_10_T 175 269 267 506 92 514 2 9 14 13 0,4 simple NA 6 102133419 102133554 6 102137455 102137622 12257455 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 105031008 105031435 6 105040550 105041276 12282822 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 105265912 105266120 6 106087735 106087949 12284454 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 105777726 105777897 6 105780888 105781102 12288012 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 604 1237 0 605 604 1239 1 7 6 8 0,5 simple NA 6 105856350 105856451 6 105861523 105861731 12288480 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_6_T 597 882 0 599 283 908 2 7 15 8 0,378378 simple NA 6 106854360 106854524 6 136785082 136785283 12295760 5 - + 0 0 1 1 91 150 1 0 1 INTRA cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 107106388 107106649 6 107304358 107304611 12297357 19 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 606 658 0 607 51 737 1 5 15 15 0,25 simple NA 6 108760461 108760729 6 108761781 108762071 12307531 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 108898999 108899196 6 108907231 108907412 12308234 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_3_T 0 610 607 801 191 840 3 3 19 15 0,15 simple NA 6 109058510 109058662 6 109105797 109106030 12309134 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 109384418 109384548 6 109405534 109405630 12310904 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 28 513 516 861 346 898 -3 3 15 24 0,133333 simple NA 6 109456314 109456461 6 109470546 109470689 12311358 3 + + 1 1 1 1 62 103 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 110676938 110677165 6 112372122 112372332 12320111 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T 632 825 0 633 192 838 1 9 34 18 0,257143 simple NA 6 110896163 110896466 6 110898436 110898642 12321557 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 465 1025 7 467 458 1028 2 5 19 14 0,232558 simple NA 6 111638469 111638723 6 111641509 111641765 12326575 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 112287612 112287761 6 112296388 112296562 12330770 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 114828190 114828406 6 114829297 114829487 12352115 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 114869034 114869259 6 114874848 114875029 12352384 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 116703835 116704061 6 117602837 117603040 12369219 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_6_T 372 736 33 372 339 757 0 6 6 11 0,413793 simple NA 6 117234365 117234550 6 117240939 117241165 12373371 9 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 117321701 117321817 6 117336872 117337000 12374246 5 + - 0 0 1 1 150 67 1 0 1 DEL cancer_singleSample OV_6_T 409 759 79 324 246 780 -85 11 4 5 0,709677 simple NA 6 118395096 118395339 6 118397451 118397683 12382389 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 46 314 332 554 223 554 -18 4 20 10 0,210526 simple NA 6 120120738 120120879 6 120135691 120135896 12396493 4 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_7_T 587 899 0 596 303 1001 9 4 9 7 0,333333 simple NA 6 121024017 121024288 6 121050895 121051160 12405306 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_11_T 50 156 14 52 36 168 2 NA NA NA NA simple NA 6 123896796 123897109 6 123901906 123902324 12428732 21 + - 0 1 1 1 147 150 1 0 1 DEL cancer_singleSample GBM_6_T 300 494 7 300 194 520 0 1 5 10 0,117647 extreme_oneoff GBM_6_T;chainID=1 6 124865042 124865311 6 124869876 124870125 12437141 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 506 798 34 511 287 847 5 6 17 24 0,226415 simple NA 6 124939901 124940065 6 124940762 124940988 12437769 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 125303172 125303299 6 125879535 125879723 12440717 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 125327659 125327941 6 125639514 125639778 12440927 30 - + 0 0 1 1 123 150 1 0 1 DUP cancer_singleSample LUSC_13_T 279 637 0 283 279 646 4 9 27 32 0,233766 mild_oneoff LUSC_13_T;chainID=10 6 125376027 125376312 6 125558567 125558854 12441445 31 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T 603 801 2 607 194 824 4 15 29 30 0,337079 mild_oneoff LUSC_13_T;chainID=10 6 125395255 125395489 6 125397035 125397297 12441617 10 + - 3 0 1 1 148 150 1 0 1 DEL cancer_singleSample OV_4_T 606 779 1 608 171 782 2 1 5 1 0,25 simple NA 6 125423472 125423744 6 125454458 125454689 12441815 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 1 547 553 680 128 699 -6 7 35 41 0,155556 mild_oneoff LUSC_13_T;chainID=10 6 125876526 125876722 6 126851884 126852108 12444963 6 - + 0 1 1 1 145 150 1 0 1 DUP cancer_singleSample OV_6_T 0 592 604 1188 585 1188 -12 8 11 3 0,533333 simple NA 6 126122399 126122514 6 126128870 126128989 12446935 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 126397639 126397883 6 126446643 126446879 12449093 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 127057528 127057715 6 128817400 128817605 12455437 6 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample COAD_1_T 620 925 0 626 299 927 6 8 13 13 0,380952 simple NA 6 127400266 127400473 6 128818085 128818307 12459057 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample COAD_1_T 617 1227 0 618 609 1227 1 7 12 11 0,378378 simple NA 6 129356274 129356459 6 129365588 129366370 12475771 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 129777976 129778124 7 151938393 151938572 13470643 6 + - 0 2 1 1 150 88 1 0 1 INTER cancer_singleSample LUSC_6_T 66 218 216 937 150 937 2 11 30 15 0,328358 simple NA 6 129829991 129830210 6 129839667 129840192 12479637 3 + + 0 0 1 1 150 65 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 129964245 129964417 6 129981473 129981665 12480983 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 637 861 21 619 225 861 -18 5 22 22 0,185185 mild_oneoff LUSC_13_T;chainID=11 6 129969322 129969540 6 129991303 129991552 12481007 18 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T 21 229 229 381 152 619 0 6 8 26 0,26087 mild_oneoff LUSC_13_T;chainID=11 6 129969680 129969928 6 129984329 129984567 12481008 19 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T 502 729 33 503 226 733 1 10 7 26 0,377358 mild_oneoff LUSC_13_T;chainID=11 6 131582563 131582775 6 131584410 131584633 12494699 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 13 551 550 785 234 786 1 10 11 22 0,377358 simple NA 6 131638099 131638756 6 131648248 131648850 12495295 3 - - 0 0 1 1 150 66 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 132338446 132338577 6 148820085 148820210 12500880 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_8_T 526 681 266 528 153 720 2 1 12 2 0,125 simple NA 6 134233192 134233396 6 134239096 134239337 12516605 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 606 1123 0 605 518 1132 -1 3 12 9 0,222222 simple NA 6 134564815 134565055 6 134566306 134566577 12518896 19 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 15 283 286 746 269 746 -3 12 18 17 0,40678 simple NA 6 134713986 134714169 6 134732669 134732858 12520055 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 428 959 0 428 428 979 0 8 19 14 0,326531 simple NA 6 134735535 134735825 6 134781000 134781263 12520202 14 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T 11 380 376 727 347 764 4 2 13 25 0,0952381 simple NA 6 134813515 134813725 6 135267138 135267310 12520904 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T 466 1026 28 474 438 1047 8 3 6 14 0,230769 simple NA 6 135493559 135493786 6 135500470 135500785 12526017 6 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 254 702 38 249 212 737 -5 5 14 28 0,192308 simple NA 6 136859379 136859573 6 136862623 136862848 12537660 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 0 622 619 1002 380 1002 3 4 11 20 0,205128 simple NA 6 138207437 138207667 6 138229529 138229770 12548327 10 - + 0 0 1 1 96 150 1 0 1 DUP cancer_singleSample BRCA_4_T 172 606 2 172 170 647 0 17 104 33 0,19883 simple NA 6 138516385 138516508 6 138519325 138519460 12551421 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 141400914 141401106 6 141412004 141413152 12573837 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 141489882 141490124 6 141492754 141493008 12574425 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 239 493 24 239 215 520 0 7 14 13 0,341463 simple NA 6 143224307 143224438 6 143228598 143228760 12591030 3 - + 2 2 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 653 788 0 655 133 832 2 0 23 13 0 simple NA 6 144697371 144697500 6 144705507 144705636 12602465 6 + - 0 0 1 1 116 133 1 0 1 DEL cancer_singleSample OV_10_T 0 555 552 1151 552 1151 3 8 3 1 0,8 simple NA 6 146580802 146580970 6 146582001 146582205 12621989 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 146803401 146803586 6 146858329 146858516 12624102 3 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_4_T 215 795 11 219 204 795 4 9 27 23 0,264706 simple NA 6 147135089 147135288 6 148876916 148877134 12627664 8 - + 2 1 1 1 150 123 1 0 1 INTRA cancer_singleSample BRCA_5_T 575 749 0 579 170 761 4 6 21 23 0,214286 simple NA 6 147223240 147223440 6 147261697 147261911 12628336 6 - + 0 0 1 1 150 114 1 0 1 DUP cancer_singleSample BRCA_4_T 465 972 33 466 432 973 1 3 29 34 0,0869565 simple NA 6 147922195 147922314 6 147930760 147930885 12634311 3 - + 0 0 1 1 150 118 1 0 1 DUP cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 148622485 148622659 6 148626115 148626302 12640235 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 149945272 149945534 6 149947088 149947364 12649718 10 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 5 370 368 831 363 846 2 10 3 1 0,833333 simple NA 6 149972070 149972349 6 149975874 149976096 12649835 11 - + 0 0 1 1 150 120 1 0 1 DUP cancer_singleSample OV_10_T 518 743 15 518 225 743 0 4 9 6 0,347826 simple NA 6 150690568 150690721 6 155360112 155360306 12653736 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 0 535 531 996 461 996 4 2 21 19 0,0909091 mild_oneoff LUAD_5_T;chainID=6 6 150877438 150877557 6 150957250 150957437 12655298 3 - + 2 0 1 1 119 150 1 0 1 DUP cancer_singleSample OV_1_T 0 649 646 931 282 934 3 3 8 15 0,206897 simple NA 6 150885110 150885252 6 150896770 150897011 12655371 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 10 412 412 665 253 670 0 12 27 32 0,289157 simple NA 6 151007547 151007784 6 151094560 151094829 12656180 23 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 632 833 0 643 190 840 11 0 30 24 0 simple NA 6 151153515 151153707 6 151195992 151196189 12657065 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 326 914 32 324 293 915 -2 6 18 10 0,3 simple NA 6 151364875 151364965 6 151368071 151368218 12658709 6 + - 0 0 1 1 150 94 1 0 1 DEL cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 151878806 151879070 6 152530978 152531208 12662026 12 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 10 596 596 974 378 990 0 11 21 13 0,392857 simple NA 6 154314325 154314566 6 155386791 155387104 12681530 6 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 639 923 0 640 283 940 1 2 6 23 0,121212 mild_oneoff LUAD_5_T;chainID=6 6 154314594 154314822 6 155451396 155451602 12681531 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 3 630 630 1035 405 1051 0 5 11 18 0,25641 mild_oneoff LUAD_5_T;chainID=6 6 154848266 154848506 6 154849749 154850033 12685003 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 6 327 323 718 317 718 4 8 11 17 0,363636 simple NA 6 157092573 157092803 6 157096063 157096273 12701530 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_4_T 605 1099 0 609 490 1184 4 7 15 20 0,285714 simple NA 6 157094289 157094408 6 157095349 157095475 12701532 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 157237668 157237804 6 157427660 157427872 12702291 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 603 1110 9 605 505 1126 2 6 9 7 0,428571 simple NA 6 157526330 157526526 6 157529087 157529253 12703510 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 628 1286 8 627 620 1286 -1 4 35 20 0,126984 simple NA 6 158507603 158507865 6 170599176 170599435 12709314 4 - + 6 7 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_5_T 233 832 0 233 233 832 0 3 9 1 0,375 simple NA 6 158865154 158865362 6 158874171 158874391 12711273 4 - + 2 0 1 1 118 135 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 158871707 158871995 6 158874407 158874684 12711300 5 + - 0 0 1 1 150 125 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 159480135 159480333 6 159500840 159501007 12714260 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 606 802 0 607 195 849 1 8 16 17 0,326531 simple NA 6 159942987 159943226 6 159944559 159944792 12716865 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 379 984 8 379 371 984 0 3 23 19 0,125 simple NA 6 160375555 160375753 6 160380107 160380301 12719370 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 635 1056 28 633 422 1074 -2 6 16 12 0,3 simple NA 6 160540378 160540600 6 160574353 160574548 12720294 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 623 1233 0 609 610 1236 -14 8 11 8 0,457143 simple NA 6 160916191 160916496 6 160926198 160926760 12722925 3 - - 0 1 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T 28 212 200 422 172 425 12 0 22 3 0 simple NA 6 161565774 161565981 6 161567392 161567615 12730531 4 + - 0 0 1 1 120 150 1 0 1 DEL cancer_singleSample BRCA_3_T 7 204 201 607 194 829 3 1 13 15 0,0666667 simple NA 6 161767167 161767374 6 162232778 162232968 12731470 5 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_1_T 413 981 18 352 335 981 -61 7 17 15 0,304348 simple NA 6 162384962 162385230 6 162399369 162399673 12734511 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 16 169 162 656 146 690 7 9 24 24 0,272727 simple NA 6 162463549 162463690 6 162605589 162605744 12734952 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 162676633 162676850 6 162736201 162736372 12736507 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 162704953 162705164 6 162789165 162789396 12736703 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 162822608 162822831 6 162826331 162826535 12737472 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T 0 614 620 1222 603 1252 -6 7 14 20 0,291667 simple NA 6 162972924 162973184 6 162975575 162975826 12738293 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 0 125 123 448 123 466 2 7 11 6 0,451613 simple NA 6 162984131 162984266 6 162988903 162989054 12738363 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_12_T 0 636 638 966 329 1017 -2 4 11 12 0,258065 simple NA 6 163149568 163149683 6 163159237 163159504 12739251 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 271 875 7 272 264 875 1 6 12 17 0,292683 simple NA 6 163784804 163784977 6 163791674 163791864 12743120 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_2_T 625 789 8 625 164 794 0 2 14 22 0,1 simple NA 6 163838084 163838251 6 163948111 163948267 12743315 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 164690385 164690673 6 164691544 164691779 12748428 12 + - 0 0 1 1 150 144 1 0 1 DEL cancer_singleSample LUSC_13_T 0 613 614 1226 613 1226 -1 6 23 18 0,226415 simple NA 6 164844497 164844735 6 164847264 164847510 12749472 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 239 654 15 236 222 674 -3 0 21 18 0 simple NA 6 165422425 165422696 6 165443582 165443854 12754176 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 166130874 166131176 6 167625619 167625849 12759106 15 + - 1 2 1 1 145 150 1 0 1 INTRA cancer_singleSample OV_1_T 312 765 7 313 305 794 1 12 27 21 0,333333 simple NA 6 166536161 166536593 6 166545916 166547024 12760941 3 - - 0 1 1 1 77 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 167433510 167433969 6 167446043 167446979 12763948 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T 104 473 461 573 100 684 12 0 27 23 0 simple NA 6 167571550 167571816 6 167577489 167577748 12764719 16 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 5 617 616 808 191 843 1 8 13 12 0,390244 simple NA 6 167654864 167654993 6 167680624 167680751 12765845 3 - - 0 1 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 6 169106567 169106825 6 169108409 169108736 12772089 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 607 965 0 610 355 1004 3 0 9 6 0 simple NA 6 169343571 169343715 6 169358813 169358948 12773403 3 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_19_T 0 611 609 913 302 918 2 3 9 17 0,1875 mild_oneoff GBM_19_T;chainID=2 7 674619 674732 X 43636256 43636376 2601771 3 + + 0 3 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T 0 652 655 939 285 949 -3 0 13 22 0 simple NA 7 2864339 2864414 7 2864805 2864907 14094723 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 151 596 7 153 144 605 2 6 11 11 0,352941 simple NA 7 2884195 2884363 7 2913382 2913588 14095936 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 616 1248 0 617 616 1248 1 7 3 11 0,5 simple NA 7 3480125 3480208 7 3577845 3577994 14134823 3 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 275 421 39 280 141 463 5 7 15 14 0,325581 simple NA 7 4309106 4309265 7 4337548 4337766 14193612 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 340 581 0 342 239 627 2 0 9 20 0 simple NA 7 4424690 4424819 7 4425790 4425961 14201183 6 + - 0 0 1 1 103 146 1 0 1 DEL cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 4570775 4570992 7 4580696 4580913 14208353 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 5579475 5579636 7 19987980 19988175 14281891 5 + + 0 0 1 1 39 150 1 0 1 INTRA cancer_singleSample OV_10_T 122 233 0 116 112 247 -6 8 31 9 0,285714 simple NA 7 6388821 6388904 7 6389508 6389761 14577946 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_3_T 0 582 551 680 98 739 31 1 38 8 0,0416667 simple NA 7 7302538 7302760 7 7313281 7313545 14647699 10 + - 0 0 1 1 143 150 1 0 1 DEL cancer_singleSample OV_10_T 0 535 533 866 331 895 2 4 14 0 0,363636 simple NA 7 7457617 7457757 7 7466214 7466313 14656988 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 647 911 0 648 263 911 1 3 10 8 0,25 simple NA 7 8060909 8061039 X 100267523 100267687 2603070 4 - + 0 3 1 1 150 85 1 0 1 INTER cancer_singleSample LUSC_1_T 558 801 79 562 239 861 4 8 20 8 0,363636 simple NA 7 8681240 8681342 7 103801394 103801525 14749463 3 + - 3 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 9988517 9988663 7 9991320 9991441 14853846 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 0 682 679 912 230 981 3 3 2 2 0,6 simple NA 7 10576288 10576515 7 16341526 16341747 13616431 11 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_5_T 0 636 636 747 111 747 0 11 7 14 0,511628 simple NA 7 10638207 10638381 X 106613415 106613589 2573200 6 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_2_T 319 936 68 321 251 936 2 1 6 96 0,0192308 simple NA 7 10876784 10876869 7 56226133 56226306 13641611 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 12060751 12060938 7 12087740 12087947 13748038 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 12631552 12631792 7 25238208 25238431 13798255 17 + + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_5_T 23 347 345 479 132 491 2 6 26 15 0,226415 simple NA 7 12688006 12688247 9 124325947 124326082 14871495 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T 610 763 0 610 153 800 0 4 9 25 0,190476 simple NA 7 15458141 15458337 7 18756597 18756807 13984192 5 + - 1 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_4_T 644 783 0 647 136 825 3 4 8 15 0,258065 simple NA 7 17379345 17379564 7 17383007 17383264 14019097 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 614 612 1239 612 1239 2 6 8 7 0,444444 simple NA 7 17586252 17586475 7 17675165 17675404 14021054 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_8_T 240 417 26 219 178 601 -21 4 34 15 0,140351 simple NA 7 17799448 17799534 7 17804175 17804278 14022641 3 - + 0 0 1 1 137 150 1 0 1 DUP cancer_singleSample OV_8_T 394 459 2 396 63 471 2 NA NA NA NA simple NA 7 18041469 18041603 7 18043177 18043408 14024375 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 196 330 9 198 132 337 2 3 8 25 0,153846 simple NA 7 18087478 18087699 7 18091269 18091466 14024669 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 263 846 18 265 245 846 2 7 3 11 0,5 simple NA 7 18825914 18826091 7 18826445 18826615 14030080 4 + - 0 2 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_12_T 113 488 3 123 110 517 10 0 0 0 0 simple NA 7 19308982 19309159 7 19344005 19344248 14034003 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 169 271 8 171 100 297 2 10 18 23 0,327869 simple NA 7 19790015 19790133 7 19848059 19848256 14038071 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 1 228 224 446 218 496 4 4 16 8 0,25 simple NA 7 19992483 19992726 7 20492448 20492696 14040010 7 - + 1 1 1 1 69 140 1 0 1 DUP cancer_singleSample OV_5_T 602 857 0 605 252 891 3 8 31 13 0,266667 simple NA 7 20226503 20226631 7 20246018 20246148 14041981 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 12 220 217 315 95 760 3 7 23 18 0,254545 simple NA 7 20851555 20851735 7 20860699 20860946 14045953 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 477 527 5 478 49 537 1 NA NA NA NA simple NA 7 21154151 21154368 7 21159428 21159670 14048140 9 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 21791735 21791985 7 46823276 46823536 14052875 19 - - 0 1 1 1 150 148 1 0 1 INTRA cancer_singleSample OV_5_T 0 591 589 835 244 849 2 14 8 19 0,509091 simple NA 7 23159549 23159712 7 23330045 23330236 14061997 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_1_T 163 495 73 165 90 557 2 17 26 35 0,357895 simple NA 7 23401452 23401701 7 23402448 23402688 14063328 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 10 537 537 681 144 681 0 3 21 17 0,136364 simple NA 7 23560049 23560297 7 40168199 40168511 14064191 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T 84 670 663 928 258 928 7 6 3 15 0,4 simple NA 7 24250299 24250500 7 24257686 24257892 14069678 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 633 628 791 158 792 5 5 9 7 0,384615 simple NA 7 24277821 24277964 X 90972256 90972555 2577167 5 - + 0 0 1 1 150 102 1 0 1 INTER cancer_singleSample LUAD_3_T 0 583 583 1226 583 1226 0 3 19 10 0,171429 simple NA 7 24561198 24561344 7 24563207 24563410 14071897 3 + - 4 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 524 771 16 525 246 830 1 10 5 5 0,666667 simple NA 7 25417234 25417459 7 25432992 25433239 14077199 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 606 607 1021 415 1035 -1 9 14 23 0,327273 simple NA 7 25447272 25447473 8 107968985 107969180 14857539 6 + - 0 0 1 1 150 99 1 0 1 INTER cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 27678321 27678445 7 27929788 27930022 14088950 3 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 15 147 144 652 129 656 3 4 18 21 0,170213 simple NA 7 27990021 27990195 8 108412403 108412579 14857959 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 629 785 0 632 153 811 3 5 17 35 0,16129 extreme_stepwise LUSC_11_T;chainID=8 7 29220789 29221076 7 29223173 29223459 14098216 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 398 846 44 401 354 874 3 4 13 8 0,275862 simple NA 7 31142303 31142505 7 31299875 31300093 14108731 6 - + 3 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 641 1048 0 645 403 1052 4 9 17 7 0,428571 simple NA 7 31963998 31964179 7 31966284 31966409 14115454 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 324 342 554 213 575 -18 3 7 2 0,4 simple NA 7 32396769 32397029 7 32406271 32406481 14118217 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_3_T 0 619 614 869 250 892 5 8 24 23 0,253968 simple NA 7 34396090 34396291 7 34428341 34428571 14131539 16 + - 0 0 1 1 147 145 1 0 1 DEL cancer_singleSample OV_3_T 579 676 0 580 96 699 1 6 26 18 0,214286 simple NA 7 35623407 35623556 7 35942836 35942995 14141129 5 - + 0 0 1 1 150 84 1 0 1 DUP cancer_singleSample GBM_16_T 43 143 143 558 100 583 0 9 29 10 0,315789 simple NA 7 36357280 36357547 7 36713090 36713344 14145552 11 - - 2 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_5_T 651 1060 170 648 410 1100 -3 6 18 18 0,25 simple NA 7 37589962 37590121 7 53510290 53510465 14154325 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_13_T;chainID=2 7 37686332 37686537 7 55752931 55753126 14155108 3 + - 0 1 1 1 150 40 1 0 1 INTRA cancer_singleSample GBM_13_T 0 618 623 1005 383 1006 -5 10 25 15 0,333333 extreme_stepwise GBM_13_T;chainID=2 7 38394024 38394378 7 38402927 38403379 14161477 3 - + 0 0 1 1 87 150 1 0 1 DUP cancer_singleSample GBM_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 38412387 38412549 7 38616866 38617044 14161597 3 - + 2 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_5_T;chainID=6 7 38439861 38440009 7 38669726 38669878 14161744 3 - - 1 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T 175 323 10 178 145 341 3 2 25 31 0,0666667 mild_oneoff LUSC_5_T;chainID=6 7 38441609 38441770 7 38616309 38616420 14161762 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_5_T;chainID=6 7 38447855 38448127 7 38615701 38615963 14161830 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_5_T;chainID=6 7 38475753 38476074 7 38617048 38617438 14162028 6 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T 605 859 0 609 250 883 4 2 35 28 0,0597015 mild_oneoff LUSC_5_T;chainID=6 7 38650334 38650506 7 38698697 38698840 14163412 10 + - 0 0 1 1 147 148 1 0 1 DEL cancer_singleSample OV_3_T 584 1107 0 585 522 1107 1 3 13 24 0,139535 simple NA 7 38722704 38722962 7 38733062 38733280 14163868 6 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T 0 634 631 972 338 972 3 0 38 16 0 mild_oneoff LUSC_5_T;chainID=6 7 38756451 38756649 7 38757878 38758080 14164064 4 - + 2 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 440 1128 9 440 431 1128 0 2 15 13 0,125 simple NA 7 39425353 39425449 7 40000443 40000694 14168346 4 - + 2 0 1 1 118 150 1 0 1 DUP cancer_singleSample OV_6_T 217 506 6 218 211 539 1 2 16 11 0,129032 simple NA 7 39582866 39583069 7 39794061 39794303 14169355 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 0 618 618 930 312 937 0 5 18 30 0,172414 simple NA 7 41008361 41008558 7 41009008 41009259 14179225 8 + - 0 0 1 1 140 150 1 0 1 DEL cancer_singleSample GBM_10_T 578 688 0 578 110 688 0 4 8 10 0,307692 simple NA 7 41502567 41502826 7 42464348 42464578 14182838 10 - - 0 0 1 1 144 150 1 0 1 INV cancer_singleSample GBM_8_T 150 305 19 151 131 319 1 4 19 19 0,173913 simple NA 7 42249053 42249251 7 42311605 42311836 14188027 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 363 870 7 365 356 870 2 11 15 15 0,423077 simple NA 7 42432195 42432409 7 46392002 46392176 14189308 11 + + 0 0 1 1 148 150 1 0 1 INTRA cancer_singleSample OV_3_T 481 723 3 482 241 723 1 3 7 15 0,214286 simple NA 7 42495792 42495896 X 45479439 45479530 2580444 4 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_3_T 48 459 459 1064 411 1064 0 7 19 5 0,368421 simple NA 7 43338233 43338399 7 43540846 43540963 14194904 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_11_T 7 106 101 366 94 369 5 3 10 17 0,181818 simple NA 7 44064642 44064822 7 55477492 55477665 14200492 5 + - 0 0 1 1 76 150 1 0 1 INTRA cancer_singleSample GBM_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_13_T;chainID=2 7 44105644 44105860 7 46668999 46669220 14200796 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T 5 607 606 868 261 899 1 6 8 12 0,375 extreme_stepwise GBM_13_T;chainID=2 7 44473274 44473418 7 45367940 45368109 14201979 5 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_13_T 699 1052 0 699 353 1077 0 1 12 13 0,0740741 simple NA 7 44474324 44474506 7 45368850 45369038 14201981 5 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_13_T 608 671 0 609 62 709 1 2 9 16 0,137931 simple NA 7 44663348 44663508 7 45093900 45094041 14202856 4 - - 0 0 1 1 117 150 1 0 1 INV cancer_singleSample GBM_13_T 420 1006 5 424 415 1021 4 7 14 13 0,341463 simple NA 7 46160967 46161151 7 51162404 51162650 14211543 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 0 621 618 797 176 826 3 5 9 14 0,30303 mild_oneoff GBM_3_T;chainID=3 7 46281318 46281553 7 46858826 46859061 14212414 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_13_T 22 156 159 769 135 769 -3 13 16 21 0,412698 simple NA 7 46539953 46540168 7 56843775 56843993 14215146 8 - - 0 0 1 1 150 124 1 0 1 INTRA cancer_singleSample GBM_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 46612640 46612771 7 46614537 46614659 14216114 7 + - 0 0 1 1 148 150 1 0 1 DEL cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 46668304 46668506 7 52510293 52510439 14216486 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_13_T;chainID=2 7 46686462 46686695 7 50572984 50573229 14216649 10 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T 0 508 508 929 421 948 0 9 12 17 0,382979 extreme_stepwise GBM_13_T;chainID=2 7 47156498 47156782 X 142798543 142798813 2581116 5 + + 0 0 1 1 150 89 1 0 1 INTER cancer_singleSample LUSC_13_T 606 968 0 610 358 1008 4 7 7 19 0,35 mild_oneoff LUSC_13_T;chainID=2 7 47183843 47184023 7 53509865 53510090 14220738 7 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T 41 366 366 629 263 644 0 11 19 28 0,318841 extreme_stepwise GBM_13_T;chainID=2 7 47477752 47477955 8 121386073 121386196 14860751 3 - - 4 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_9_T 677 794 0 679 115 813 2 4 6 16 0,266667 simple NA 7 48188943 48189154 7 63166344 63166616 14224462 19 + + 1 0 1 1 146 62 1 0 1 INTRA cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 49021980 49022226 7 49023129 49023380 14231174 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_10_T 371 971 36 372 335 982 1 7 24 21 0,237288 simple NA 7 49602615 49602902 7 49614159 49614443 14236695 16 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 49717204 49717443 X 109052977 109053190 2581429 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 50229072 50229237 7 50232881 50233045 14241409 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 18 268 266 655 248 659 2 5 25 23 0,172414 simple NA 7 50988387 50988638 7 56515008 56515228 14245009 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 51080387 51080715 7 54949871 54950175 14245531 8 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_3_T;chainID=3 7 51437676 51437854 7 51449010 51449255 14247171 4 - + 0 0 1 1 87 49 1 0 1 DUP cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 51498444 51498643 7 55748688 55748869 14247733 7 - - 0 0 1 1 150 102 1 0 1 INTRA cancer_singleSample GBM_13_T 607 1211 0 609 602 1211 2 9 16 15 0,367347 extreme_stepwise GBM_13_T;chainID=2 7 52265946 52266176 7 52281562 52281695 14253489 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 52361159 52361357 7 52361955 52362140 14254016 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 421 573 8 424 149 591 3 1 16 17 0,0571429 simple NA 7 52511527 52511673 7 54723314 54723440 14255054 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_13_T 0 609 609 808 199 813 0 11 23 15 0,366667 extreme_stepwise GBM_13_T;chainID=2 7 52802647 52802786 7 52803160 52803301 14257462 3 + - 0 1 1 1 150 101 1 0 1 DEL cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 52839471 52839653 7 55285530 55285690 14257747 6 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 52874467 52874628 7 56795543 56795653 14258054 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_14_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_14_T;chainID=2 7 52874659 52874779 7 57434368 57434493 14258057 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_14_T 608 935 0 600 328 959 -8 84 30 21 0,767123 mild_stepwise GBM_14_T;chainID=2 7 52932337 52932536 7 54539795 54539975 14258693 32 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_14_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_14_T;chainID=2 7 53065290 53065450 7 53066624 53066842 14259631 7 + - 0 0 1 1 150 115 1 0 1 DEL cancer_singleSample GBM_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 53081846 53082040 7 57611704 57611877 14259692 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 53483332 53483478 7 53819672 53819811 14263844 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 53563991 53564155 7 53600133 53600308 14264497 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 54016747 54017017 7 56226156 56226528 14267987 351 - + 0 0 1 1 147 141 1 0 1 INTRA cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 54024761 54024973 7 55230562 55230648 14268061 9 - - 0 0 1 1 73 79 1 0 1 INTRA cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 54113726 54113865 X 133195306 133195374 2582377 3 - + 0 4 1 1 35 60 1 0 1 INTER cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 54135426 54135592 7 55748105 55748282 14269034 9 - + 0 0 1 1 150 51 1 0 1 INTRA cancer_singleSample GBM_4_T 9 240 251 353 103 375 -11 31 25 12 0,626263 simple NA 7 54136774 54136937 7 118968050 118968211 14269041 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 54149170 54149388 7 56038563 56038807 14269098 44 - + 0 0 1 1 146 138 1 0 1 INTRA cancer_singleSample GBM_11_T 0 582 581 899 317 899 1 13 10 5 0,634146 simple NA 7 54313464 54313695 7 54313816 54314271 14271127 3 + - 0 0 1 1 150 80 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 54457570 54457702 7 56176764 56176912 14272629 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_14_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_14_T;chainID=2 7 54493068 54493288 7 55476043 55476266 14272979 25 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_4_T 480 735 732 811 76 827 3 NA NA NA NA simple NA 7 54510018 54510254 7 54524204 54524390 14273129 7 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 54531582 54531763 7 55061961 55062143 14273306 6 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 54576047 54576165 7 54632154 54632280 14273620 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 54581000 54581294 7 54581420 54581891 14273645 3 + - 0 0 1 1 72 69 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 54594505 54594799 7 55268723 55269047 14273717 44 + + 0 1 1 1 148 149 1 0 1 INV cancer_singleSample GBM_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_5_T;chainID=1 7 54611122 54611536 7 54611877 54612309 14273841 3 + - 0 1 1 1 150 95 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 54618097 54618281 7 54619930 54620119 14273848 4 + - 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+ 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_5_T;chainID=1 7 54775297 54775478 7 55859572 55859816 14275076 5 + - 3 2 1 1 150 134 1 0 1 INTRA cancer_singleSample GBM_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_5_T;chainID=1 7 54776605 54776814 7 55314446 55314690 14275094 119 - + 0 0 1 1 128 149 1 0 1 DUP cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_10_T;chainID=3 7 54778399 54778864 7 55864645 55864959 14275110 84 + - 1 3 1 1 132 108 1 0 1 INTRA cancer_singleSample GBM_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_5_T;chainID=1 7 54778857 54778996 7 55641174 55641306 14275117 3 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_17_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_17_T;chainID=3 7 54779071 54779268 7 55641087 55641314 14275118 286 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_17_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_17_T;chainID=3 7 54787648 54787946 7 54826225 54826522 14275233 162 - 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+ 0 0 1 1 34 145 1 0 1 DUP cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_8_T;chainID=4 7 54835064 54835185 7 54862014 54862229 14275662 4 - - 0 0 1 1 150 135 1 0 1 INV cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_10_T;chainID=3 7 54849343 54849540 7 55411357 55411544 14275758 5 + - 2 6 1 1 147 140 1 0 1 DEL cancer_singleSample GBM_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_5_T;chainID=1 7 54858956 54859283 7 55019268 55019600 14275817 83 - + 0 0 1 1 150 136 1 0 1 DUP cancer_singleSample GBM_2_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_2_T;chainID=2 7 54872006 54872205 7 55011972 55012108 14275905 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_17_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_17_T;chainID=3 7 54873531 54873675 7 56754523 56754641 14275912 4 - - 0 1 1 1 141 130 1 0 1 INTRA cancer_singleSample GBM_14_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_14_T;chainID=2 7 54874826 54875049 7 54882410 54882525 14275924 4 + - 0 0 1 1 143 116 1 0 1 DEL cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_10_T;chainID=3 7 54878841 54879121 7 55653856 55654024 14275965 10 + - 1 1 1 1 148 150 1 0 1 DEL cancer_singleSample GBM_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_5_T;chainID=1 7 54888182 54888360 7 55278805 55279035 14276076 3 - - 1 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_10_T;chainID=3 7 54895510 54895631 7 55122662 55122739 14276187 4 + - 0 0 1 1 150 78 1 0 1 DEL cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_8_T;chainID=4 7 54896110 54896364 7 55775806 55776051 14276197 16 - + 0 0 1 1 150 75 1 0 1 DUP cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_3_T;chainID=3 7 54907941 54908100 7 55176556 55176641 14276230 13 - - 0 0 1 1 144 144 1 0 1 INV cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_8_T;chainID=4 7 54910860 54911054 7 54919401 54919573 14276246 4 + - 1 1 1 1 150 126 1 0 1 DEL cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_3_T;chainID=3 7 54911240 54911344 7 54915760 54915933 14276250 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_10_T;chainID=3 7 54919512 54919692 7 55114904 55115110 14276323 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 54922360 54922602 7 55040614 55040853 14276373 283 - + 0 1 1 1 132 150 1 0 1 DUP cancer_singleSample GBM_17_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_17_T;chainID=3 7 54927349 54927607 7 55076010 55076285 14276516 11 - - 0 0 1 1 146 150 1 0 1 INV cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_10_T;chainID=3 7 54932651 54932796 7 54933114 54933534 14276557 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 54950982 54951230 7 55278802 55279068 14276845 32 - - 0 1 1 1 149 148 1 0 1 INV cancer_singleSample GBM_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_5_T;chainID=1 7 54967020 54967318 7 55000486 55000753 14277012 35 - - 0 1 1 1 149 148 1 0 1 INV cancer_singleSample GBM_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_5_T;chainID=1 7 54968445 54968692 7 55240950 55241203 14277037 10 + + 0 0 1 1 101 146 1 0 1 INV cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_10_T;chainID=3 7 54968766 54968943 7 55241304 55241534 14277041 10 - - 0 0 1 1 139 144 1 0 1 INV cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_10_T;chainID=3 7 54971109 54971231 7 55070613 55070733 14277055 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_10_T;chainID=3 7 54973458 54973718 7 55066619 55066847 14277081 30 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_4_T 372 550 34 374 176 565 2 23 57 38 0,326241 simple NA 7 54982538 54982811 7 55383098 55383372 14277201 19 + + 5 0 1 1 150 146 1 0 1 INV cancer_singleSample GBM_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_5_T;chainID=1 7 55011430 55011535 7 55019742 55019868 14277429 3 + - 0 0 1 1 144 66 1 0 1 DEL cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_10_T;chainID=3 7 55021423 55021653 7 55122877 55123101 14277510 62 + - 0 0 1 1 149 148 1 0 1 DEL cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_8_T;chainID=4 7 55021938 55022061 7 55223150 55223347 14277512 18 - + 1 0 1 1 135 149 1 0 1 DUP cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_8_T;chainID=4 7 55033541 55033648 7 55073918 55074034 14277617 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_8_T;chainID=4 7 55035866 55035972 7 55205341 55205520 14277645 4 - - 0 0 1 1 124 150 1 0 1 INV cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_8_T;chainID=4 7 55036491 55036712 7 55103207 55103452 14277655 8 + - 0 0 1 1 139 104 1 0 1 DEL cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_10_T;chainID=3 7 55100665 55100854 7 55485920 55486119 14278055 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_2_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_2_T;chainID=2 7 55102899 55103026 7 55223218 55223379 14278082 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_10_T;chainID=3 7 55110821 55110968 7 55111740 55111900 14278140 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 55111893 55112245 7 55112357 55112583 14278155 3 + - 0 0 1 1 139 150 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 55116230 55116513 7 55151424 55151719 14278194 30 - + 1 2 1 1 148 148 1 0 1 DUP cancer_singleSample GBM_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 55122389 55122634 7 55223386 55223564 14278230 16 + - 0 0 1 1 127 132 1 0 1 DEL cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_8_T;chainID=4 7 55130498 55130765 7 55223085 55223314 14278280 52 + - 0 0 1 1 141 147 1 0 1 DEL cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_8_T;chainID=4 7 55132228 55132441 7 55222615 55222792 14278298 41 - + 0 0 1 1 136 150 1 0 1 DUP cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_8_T;chainID=4 7 55132961 55133182 7 55133387 55133841 14278306 3 + - 0 1 1 1 145 150 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 55162355 55162492 7 55245198 55245327 14278442 3 - - 1 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_2_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_2_T;chainID=2 7 55170404 55170756 7 55379930 55380216 14278479 535 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_2_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_2_T;chainID=2 7 55176556 55176637 7 55282048 55282161 14278514 5 + - 0 0 1 1 108 124 1 0 1 DEL cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_8_T;chainID=4 7 55191874 55192235 7 55222917 55223240 14278640 190 - + 0 0 1 1 150 148 1 0 1 DUP cancer_singleSample GBM_2_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_2_T;chainID=2 7 55194031 55194157 7 55222048 55222265 14278648 3 + - 0 0 1 1 150 94 1 0 1 DEL cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_10_T;chainID=3 7 55195488 55195698 7 55222220 55222438 14278672 16 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_8_T;chainID=4 7 55201431 55201725 7 55222840 55223160 14278688 121 + - 0 0 1 1 150 124 1 0 1 DEL cancer_singleSample GBM_2_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_2_T;chainID=2 7 55209570 55209838 7 55223464 55223748 14278749 148 + - 0 0 1 1 147 126 1 0 1 DEL cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_10_T;chainID=3 7 55230566 55230649 7 55296253 55296418 14278831 4 + + 0 0 1 1 73 150 1 0 1 INV cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 55237092 55237484 7 55237595 55237976 14278862 3 + - 0 0 1 1 150 127 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 55268726 55268960 7 55274292 55274537 14279068 63 + - 0 0 1 1 148 150 1 0 1 DEL cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_8_T;chainID=4 7 55277359 55277574 7 55537312 55537586 14279136 25 - - 0 2 1 1 150 149 1 0 1 INV cancer_singleSample GBM_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_5_T;chainID=1 7 55291342 55291549 7 55291698 55291978 14279236 3 + - 0 0 1 1 142 150 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 55296217 55296399 7 55318025 55318150 14279263 16 - + 0 0 1 1 146 142 1 0 1 DUP cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 55315808 55316019 7 55318035 55318158 14279389 6 + - 0 0 1 1 118 94 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 55327617 55327892 7 55476165 55476468 14279423 48 - - 0 3 1 1 148 148 1 0 1 INV cancer_singleSample GBM_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_5_T;chainID=1 7 55415998 55416205 7 56795221 56795440 14280057 181 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_14_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise GBM_14_T;chainID=2 7 55450167 55450471 7 55450627 55450908 14280205 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 55450429 55450514 7 55637313 55637494 14280206 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 55507423 55507570 7 55507687 55508024 14280424 3 + - 1 0 1 1 150 146 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 55577231 55577952 7 55578062 55578364 14280807 4 + - 0 0 1 1 124 70 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 7 55636634 55636912 7 55653856 55654029 14281046 8 + + 4 1 1 1 149 150 1 0 1 INV cancer_singleSample GBM_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_5_T;chainID=1 7 55743359 55743592 7 55744494 55744674 14281678 5 + - 0 0 1 1 90 104 1 0 1 DEL cancer_singleSample GBM_13_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_13_T;chainID=2 7 55743759 55743935 7 56716338 56716538 14281684 30 - - 0 0 1 1 103 149 1 0 1 INV cancer_singleSample GBM_14_T 436 809 57 440 369 816 4 4 88 55 0,0529801 mild_stepwise GBM_14_T;chainID=2 7 55849757 55849933 X 136223947 136224022 2582691 3 - - 0 1 1 1 64 102 1 0 1 INTER cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 55881583 55881767 7 55881997 55882564 14282678 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 56041757 56041958 7 56042208 56042852 14283406 3 + - 0 1 1 1 139 91 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 56064949 56065312 7 56065497 56065829 14283538 3 + - 0 0 1 1 107 87 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 56561450 56561540 7 56611273 56611348 14287171 4 + + 2 2 1 1 150 121 1 0 1 INV cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 56694798 56694964 7 56842829 56843003 14288000 5 + + 0 0 1 1 150 84 1 0 1 INV cancer_singleSample GBM_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 56850417 56850607 7 56851543 56851702 14290193 4 + - 0 0 1 1 51 103 1 0 1 DEL cancer_singleSample LUSC_11_T 522 1217 34 525 488 1217 3 0 6 6 0 simple NA 7 57276359 57276589 7 57276960 57277075 14296291 3 + - 0 0 1 1 79 150 1 0 1 DEL cancer_singleSample GBM_13_T 0 273 272 822 272 822 1 5 6 0 0,625 simple NA 7 57724224 57724369 7 57869932 57870050 14301129 3 + + 0 0 1 1 90 56 1 0 1 INV cancer_singleSample GBM_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 62730499 62730605 7 62936641 62936739 14569554 3 + + 0 0 1 1 44 85 1 0 1 INV cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 63897405 63897616 7 63899501 63899711 14578094 6 + - 0 0 1 1 140 150 1 0 1 DEL cancer_singleSample LUSC_13_T 268 876 44 246 203 876 -22 8 12 20 0,333333 simple NA 7 64043809 64044039 7 64051131 64051313 14578723 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 64470460 64470713 7 65193036 65193154 14580762 12 + - 0 0 1 1 136 150 1 0 1 DEL cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 64780612 64780731 7 64781024 64781152 14584498 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 461 588 46 464 124 588 3 7 9 4 0,518519 simple NA 7 65500648 65500889 7 65541717 65541984 14589629 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_18_T 517 567 4 517 50 573 0 NA NA NA NA simple NA 7 65504675 65504901 7 65513137 65513383 14589652 16 - + 0 1 1 1 140 150 1 0 1 DUP cancer_singleSample OV_10_T 22 206 200 599 178 599 6 9 17 18 0,339623 simple NA 7 65920212 65920374 7 65924259 65924431 14592079 3 - + 0 0 1 1 57 99 1 0 1 DUP cancer_singleSample BRCA_4_T 0 695 701 992 292 992 -6 11 27 28 0,285714 simple NA 7 65970682 65970924 7 65988635 65988921 14592274 10 - + 2 3 1 1 138 146 1 0 1 DUP cancer_singleSample OV_4_T 1 406 404 989 403 990 2 1 3 16 0,0952381 simple NA 7 65993106 65993362 7 66003127 66003377 14592371 6 + + 0 0 1 1 129 150 1 0 1 INV cancer_singleSample BRCA_6_T 0 606 597 849 243 849 9 6 16 16 0,272727 simple NA 7 66625939 66626030 7 72116544 72116622 14596514 3 - - 1 1 1 1 150 101 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 67870188 67870386 7 67874585 67874803 14607134 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 371 721 7 371 350 731 0 5 9 8 0,37037 simple NA 7 68580982 68581202 7 68583240 68583443 14612990 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 69226307 69226588 7 69258582 69258820 14617655 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T 0 607 609 775 167 795 -2 2 6 22 0,125 simple NA 7 69226826 69226970 7 69240063 69240210 14617657 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 69886390 69886624 7 69892892 69893135 14622463 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 212 320 31 213 107 361 1 6 22 27 0,196721 simple NA 7 69966783 69966971 7 70093588 70093725 14623134 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_7_T 22 472 470 576 104 613 2 5 17 8 0,285714 simple NA 7 70046473 70046632 7 70103872 70103996 14623687 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 60 357 362 880 298 882 -5 3 14 23 0,139535 simple NA 7 70071509 70071586 7 70096401 70096489 14623754 3 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_7_T 20 94 95 336 75 336 -1 4 17 13 0,210526 simple NA 7 70089856 70090167 7 70178095 70178358 14623823 18 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 582 795 13 585 210 796 3 7 13 8 0,4 simple NA 7 70103374 70103601 7 70249456 70249702 14623858 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_7_T 128 238 235 508 107 508 3 3 20 13 0,153846 simple NA 7 70176035 70176208 7 70218711 70218926 14624061 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 70231437 70231669 7 70250475 70250888 14624319 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 0 621 616 685 64 726 5 1 30 15 0,0425532 simple NA 7 70246892 70247082 7 70249321 70249457 14624379 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_10_T 0 690 688 919 229 934 2 6 10 10 0,375 simple NA 7 71233985 71234223 7 71238707 71238830 14631400 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_18_T 603 865 486 609 117 922 6 18 5 23 0,5625 simple NA 7 71234394 71234527 7 71238729 71238830 14631404 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_18_T 61 499 497 620 121 933 2 21 6 18 0,636364 simple NA 7 71246207 71246389 7 71592099 71592356 14631483 9 + - 0 0 1 1 144 146 1 0 1 DEL cancer_singleSample OV_3_T 591 993 0 594 399 993 3 3 17 12 0,171429 simple NA 7 71281439 71281692 7 71284001 71284204 14631708 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 71432675 71432910 7 71444329 71444614 14632962 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 71539385 71539651 7 71541028 71541310 14633762 15 + - 0 0 1 1 133 150 1 0 1 DEL cancer_singleSample LUSC_13_T 4 346 344 816 340 849 2 6 15 14 0,292683 simple NA 7 71778424 71778625 7 122579894 122580175 14635673 11 - - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_5_T 611 772 0 612 160 798 1 5 13 3 0,384615 simple NA 7 71857424 71857696 7 122576486 122576768 14636282 12 + + 0 1 1 1 150 149 1 0 1 INTRA cancer_singleSample OV_5_T 0 599 597 766 167 785 2 6 35 8 0,218182 simple NA 7 72323048 72323320 7 72324377 72324644 14639347 6 + - 0 0 1 1 86 49 1 0 1 DEL cancer_singleSample LUSC_13_T 333 733 54 335 279 733 2 13 19 36 0,320988 simple NA 7 73087907 73088189 7 73089076 73089333 14647940 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 0 609 606 724 115 724 3 14 32 27 0,321839 simple NA 7 73798417 73798575 7 73812725 73812938 14650650 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 0 102 99 341 99 349 3 7 26 6 0,304348 simple NA 7 73860749 73861010 7 73972967 73973222 14650979 43 - + 0 0 1 1 149 89 1 0 1 DUP cancer_singleSample OV_3_T 7 397 391 495 98 495 6 11 17 14 0,415094 simple NA 7 75332093 75332307 7 94379378 94379612 14661395 10 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 75484759 75484982 7 75501408 75501655 14662523 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 2 92 92 372 90 384 0 5 55 18 0,120482 simple NA 7 75497520 75497690 7 75526565 75526742 14662608 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 76925061 76925299 7 76933327 76933598 14672198 10 - + 0 0 1 1 150 135 1 0 1 DUP cancer_singleSample BRCA_2_T 601 830 0 608 222 830 7 5 10 19 0,25641 simple NA 7 77641287 77641557 7 77698038 77698312 14676526 17 - + 1 2 1 1 148 145 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 78345569 78345824 7 78348437 78348705 14682003 23 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 611 609 984 373 998 2 10 26 19 0,307692 simple NA 7 79534035 79534400 7 79543390 79544173 14691617 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 80828080 80828281 7 81273067 81273268 14700556 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_3_T 0 600 599 813 213 850 1 6 3 4 0,631579 simple NA 7 81295894 81296198 7 87021036 87021372 14703956 5 - - 1 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 81479507 81479869 7 85810348 85810505 14705533 4 - + 0 2 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_6_T;chainID=5 7 81532688 81533000 7 86156907 86157263 14706153 6 - + 3 0 1 1 137 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_6_T;chainID=5 7 81879582 81879832 7 81893677 81893824 14708638 5 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 208 451 449 622 171 685 2 2 23 23 0,08 simple NA 7 82866006 82866214 7 83718090 83718318 14715938 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 0 595 594 689 94 693 1 NA NA NA NA simple NA 7 84156528 84156682 7 84159052 84159247 14725176 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 6 82 80 738 74 738 2 7 28 20 0,225806 simple NA 7 84299011 84299225 7 84300026 84300279 14726668 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 84485084 84485327 7 84593218 84593399 14728276 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_9_T 0 612 609 1223 609 1223 3 4 15 9 0,25 simple NA 7 85751548 85751797 7 86610684 86610963 14739726 4 - - 1 1 1 1 150 150 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_6_T;chainID=5 7 85810848 85811116 7 86577559 86577916 14740314 7 - - 0 1 1 1 150 146 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_6_T;chainID=5 7 88047487 88047686 7 88048209 88048415 14759158 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 28 139 139 424 111 434 0 8 25 17 0,275862 simple NA 7 88660225 88660451 7 88661209 88661433 14764973 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 29 252 251 794 222 801 1 13 21 33 0,325 simple NA 7 89112738 89112904 7 89125947 89126075 14768988 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 679 1328 0 667 650 1328 -12 4 1 16 0,32 simple NA 7 89352644 89352838 7 89354129 89354321 14772210 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 20 470 478 829 352 885 -8 8 25 23 0,25 simple NA 7 89449949 89450236 7 89452019 89452276 14773151 17 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 9 368 380 611 232 688 -12 9 14 16 0,375 simple NA 7 89663592 89663869 7 89685463 89685711 14775051 22 - + 0 0 1 1 150 146 1 0 1 DUP cancer_singleSample OV_10_T 53 203 199 390 146 402 4 6 25 11 0,25 simple NA 7 89684320 89684595 7 89689964 89690202 14775597 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 6 391 389 810 383 820 2 4 18 17 0,186047 simple NA 7 89815537 89815727 7 89961844 89962019 14776497 8 + - 0 1 1 1 48 150 1 0 1 DEL cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 89844043 89844333 7 89847169 89847410 14776727 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 90667582 90667783 7 90685063 90685284 14782715 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 150 841 5 151 145 841 1 3 25 21 0,115385 simple NA 7 90824369 90824644 7 90834477 90834724 14784059 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 153 210 208 751 55 751 2 8 12 30 0,275862 simple NA 7 92469938 92470205 7 92472816 92473071 14796920 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 618 932 0 621 311 949 3 9 21 10 0,367347 simple NA 7 94688511 94688610 7 95299482 95299696 14817551 5 - + 0 1 1 1 150 147 1 0 1 DUP cancer_singleSample OV_3_T 0 587 585 832 245 860 2 5 5 23 0,263158 simple NA 7 96143773 96143962 7 128584342 128584586 14830476 6 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T 603 1034 0 608 426 1035 5 2 5 16 0,16 simple NA 7 97596694 97596914 7 97597663 97597892 14841039 10 - + 0 0 1 1 109 150 1 0 1 DUP cancer_singleSample BRCA_1_T 360 632 138 363 222 678 3 4 26 13 0,170213 simple NA 7 99334612 99334722 7 99383358 99383462 14850491 3 - + 0 0 1 1 150 129 1 0 1 DUP cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 101914969 101915144 7 101918666 101918883 13588418 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 606 872 0 607 265 875 1 2 13 9 0,153846 simple NA 7 102720447 102720645 7 102963402 102963599 13593960 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 102943057 102943284 7 102948176 102948384 13595332 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 27 250 247 421 171 791 3 2 23 27 0,0740741 simple NA 7 105080785 105081043 7 105207297 105207578 13612326 18 + - 0 0 1 1 138 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 105909430 105909697 7 105918941 105919196 13617706 14 - + 0 0 1 1 139 150 1 0 1 DUP cancer_singleSample LUSC_13_T 17 589 588 731 142 731 1 9 35 37 0,2 simple NA 7 108049368 108049538 7 108119449 108119715 13635026 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 311 549 43 314 235 549 3 6 15 14 0,292683 simple NA 7 108322472 108322682 7 108323413 108323669 13636635 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 636 1242 0 637 605 1242 1 2 7 12 0,173913 simple NA 7 108357489 108357615 7 108367443 108367679 13637098 3 + + 2 0 1 1 150 49 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 110022062 110022220 7 110302836 110302987 13653395 3 + - 2 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 110094380 110094597 7 110125908 110126163 13654057 13 + - 2 1 1 1 127 150 1 0 1 DEL cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 110385555 110385831 7 110665765 110666020 13656326 9 + - 0 0 1 1 101 150 1 0 1 DEL cancer_singleSample LUSC_5_T 445 702 32 436 258 726 -9 8 14 19 0,326531 simple NA 7 110678302 110678460 7 110716481 110716630 13659119 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_11_T 0 657 659 760 102 760 -2 11 29 10 0,360656 simple NA 7 112057202 112057434 7 112514673 112514916 13669488 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 6 237 232 269 32 343 5 7 32 31 0,181818 simple NA 7 112662078 112662266 7 112665058 112665279 13674148 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 0 609 606 1224 606 1225 3 5 20 23 0,188679 simple NA 7 113257513 113257757 7 113269169 113269352 13679914 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 388 694 30 388 306 694 0 19 40 35 0,336283 simple NA 7 113645497 113645602 7 113677427 113677562 13683542 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample COAD_1_T 0 627 626 1010 383 1010 1 5 18 10 0,263158 simple NA 7 113792530 113792741 7 113808647 113808827 13684705 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 20 265 264 518 244 536 1 7 18 11 0,325581 simple NA 7 114964727 114964872 7 116079695 116079855 13695369 6 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 115577076 115577308 7 132423608 132423870 13701415 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 31 391 390 550 159 577 1 0 18 26 0 simple NA 7 116082774 116082890 7 132700935 132701042 13706089 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 627 625 948 321 948 2 0 9 38 0 simple NA 7 117185495 117185730 7 117483138 117483400 13714780 5 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 117346835 117347021 7 117348396 117348594 13716322 6 + - 0 0 1 1 150 120 1 0 1 DEL cancer_singleSample OV_10_T 411 710 25 414 296 712 3 2 4 51 0,0677966 simple NA 7 117463606 117463811 7 117487612 117487770 13717166 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_7_T 2 169 168 555 166 558 1 6 16 11 0,307692 simple NA 7 117480757 117481052 7 117483410 117483687 13717324 11 + - 1 1 1 1 147 150 1 0 1 DEL cancer_singleSample OV_5_T 0 598 593 922 324 924 5 6 26 20 0,206897 simple NA 7 117881246 117881465 7 117882807 117883022 13721204 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 120320982 120321204 7 120486073 120486343 13745783 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 165 464 8 167 157 559 2 6 22 9 0,27907 simple NA 7 120629986 120630123 7 120638642 120638835 13748130 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 607 1109 0 610 499 1121 3 2 17 14 0,114286 simple NA 7 120803382 120803636 7 122215550 122215795 13749530 18 - + 0 0 1 1 146 72 1 0 1 INTRA cancer_singleSample OV_10_T 305 445 0 311 134 476 6 16 13 22 0,477612 simple NA 7 122413984 122414269 7 124918339 124918637 13763758 57 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 41 637 634 721 84 721 3 NA NA NA NA mild_stepwise LUSC_11_T;chainID=9 7 122443385 122443592 7 123672201 123672389 13763984 14 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 26 284 283 855 257 870 1 6 28 3 0,27907 mild_stepwise LUSC_11_T;chainID=9 7 122454476 122454724 7 123658163 123658439 13764054 12 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 32 341 340 593 252 599 1 12 14 15 0,45283 mild_stepwise LUSC_11_T;chainID=9 7 123651248 123651544 7 126138878 126139116 13774086 16 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 605 713 0 608 105 716 3 18 17 18 0,507042 mild_stepwise LUSC_11_T;chainID=9 7 124354611 124354881 7 124384175 124384443 13781141 24 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T 251 668 2 251 249 700 0 15 31 30 0,32967 simple NA 7 124458755 124458968 7 124566337 124566554 13781802 10 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 124686263 124686514 7 124705188 124705466 13783423 32 + - 0 0 1 1 143 150 1 0 1 DEL cancer_singleSample LUSC_11_T 0 388 388 1000 388 1000 0 5 19 26 0,181818 simple NA 7 126031408 126031714 7 126033840 126034109 13795704 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 169 668 25 166 142 676 -3 20 15 16 0,56338 simple NA 7 126519101 126519370 7 126523426 126523710 13799925 13 + - 0 0 1 1 150 91 1 0 1 DEL cancer_singleSample LUSC_13_T 616 799 38 614 184 847 -2 12 15 66 0,228571 simple NA 7 126930538 126930724 7 126944748 126944963 13803461 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 294 730 52 295 242 875 1 11 25 9 0,392857 simple NA 7 127550594 127550950 7 127573825 127574116 13807654 27 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 0 601 594 1211 594 1211 7 14 1 6 0,8 simple NA 7 127796762 127796994 7 127806160 127806342 13808901 9 + - 2 1 1 1 150 149 1 0 1 DEL cancer_singleSample OV_4_T 558 632 0 558 74 654 0 NA NA NA NA simple NA 7 128038027 128038250 7 128067293 128067548 13809765 12 - + 0 0 1 1 150 147 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 128462481 128462707 7 128500340 128500535 13811792 8 - + 1 0 1 1 144 150 1 0 1 DUP cancer_singleSample OV_10_T 309 438 0 309 129 465 0 4 16 14 0,210526 simple NA 7 128700389 128700656 7 128701576 128701823 13812812 19 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_1_T 347 421 6 351 70 421 4 NA NA NA NA simple NA 7 128714340 128714564 7 128723432 128723664 13812905 6 + - 2 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_9_T 237 843 0 239 237 843 2 6 22 7 0,292683 simple NA 7 130055717 130055896 7 130080800 130080995 13819878 4 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 41 399 398 998 357 998 1 9 30 7 0,327273 simple NA 7 130412144 130412289 7 137856740 137856900 13821360 8 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_1_T 75 326 337 595 252 595 -11 10 34 27 0,246914 simple NA 7 130837414 130837627 7 130838092 130838318 13823600 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 0 305 298 715 298 717 7 6 18 20 0,24 simple NA 7 131075618 131075765 7 131083083 131083304 13825246 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 7 167 168 346 161 609 -1 10 22 13 0,363636 simple NA 7 131654071 131654326 7 131658603 131658883 13828219 21 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 25 473 470 896 423 938 3 10 10 7 0,540541 simple NA 7 132046013 132046287 7 132047067 132047373 13830712 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 205 740 28 209 177 740 4 4 15 16 0,205128 simple NA 7 132052934 132053169 7 132056379 132056612 13830734 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 132389003 132389187 7 132412130 132412310 13832794 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 243 720 0 247 243 720 4 7 28 0 0,333333 simple NA 7 132997772 132997958 7 133008315 133008468 13837309 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 695 775 0 697 78 777 2 NA NA NA NA mild_oneoff LUSC_13_T;chainID=5 7 133237439 133237700 7 142442083 142442325 13839033 11 + - 0 0 1 1 150 83 1 0 1 INTRA cancer_singleSample LUSC_1_T 0 606 605 733 127 774 1 13 27 8 0,42623 simple NA 7 133480918 133481123 7 133482212 133482432 13841101 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 133771277 133771522 7 134150968 134151202 13843533 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T 0 618 620 1225 606 1225 -2 0 31 31 0 simple NA 7 133793921 133794169 7 133809419 133809647 13843716 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 599 794 48 603 191 831 4 6 25 20 0,210526 simple NA 7 133927413 133927610 7 133931683 133931934 13844717 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 134220234 134220359 7 134221145 134221381 13847033 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 516 589 14 520 69 589 4 NA NA NA NA simple NA 7 134921899 134922092 7 134924710 134924939 13853341 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 272 449 443 610 161 619 6 15 25 25 0,375 simple NA 7 135178876 135179090 7 135193598 135193799 13854918 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 135191288 135191447 7 135214395 135214543 13854997 5 - + 0 0 1 1 131 150 1 0 1 DUP cancer_singleSample BRCA_4_T 446 998 79 448 367 998 2 8 32 26 0,216216 simple NA 7 135295616 135295790 7 135300314 135300482 13855789 6 - + 2 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 0 226 222 783 222 797 4 7 20 17 0,27451 simple NA 7 136295612 136295828 7 136298091 136298334 13863743 10 + - 0 0 1 1 150 127 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 136484141 136484399 7 136495401 136495673 13865328 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 49 302 302 647 253 657 0 5 13 5 0,357143 simple NA 7 136630244 136630462 7 140775318 140775553 13866659 12 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 136888372 136888605 7 136898722 136899001 13869008 12 - + 0 0 1 1 150 149 1 0 1 DUP cancer_singleSample OV_4_T 28 104 102 194 74 233 2 4 17 19 0,181818 simple NA 7 138762261 138762527 7 138775599 138775899 13881313 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 139498898 139499039 7 139884851 139885031 13884567 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_16_T 246 645 643 1105 397 1105 2 6 3 31 0,26087 simple NA 7 139928988 139929196 7 140017553 140017768 13886744 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 140492663 140492900 7 143740391 143740631 13889443 33 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_1_T 447 687 171 450 237 687 3 28 36 20 0,5 simple NA 7 140492747 140492949 7 143740403 143740652 13889454 15 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_1_T 57 354 350 452 98 452 4 0 44 30 0 simple NA 7 140573174 140573411 7 140575774 140576024 13889977 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 8 380 381 875 373 924 -1 7 15 38 0,208955 simple NA 7 140574059 140574342 7 140578205 140578426 13889984 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 141030092 141030315 7 141572726 141572903 13893078 5 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_1_T 191 848 34 186 153 848 -5 8 24 22 0,258065 simple NA 7 142158012 142158311 7 142168412 142168788 13901566 3 + + 0 1 1 1 150 101 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 142530915 142531156 7 145315601 145315864 13904191 18 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 143769355 143769499 7 143794614 143794744 13914038 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 686 1336 0 690 646 1336 4 3 9 18 0,181818 simple NA 7 145646428 145646608 7 145646994 145647137 13929903 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 146731840 146732006 7 149985474 149985595 13937956 4 - + 0 0 1 1 150 133 1 0 1 INTRA cancer_singleSample LUSC_1_T 20 282 335 544 210 544 -53 8 18 32 0,242424 extreme_oneoff LUSC_1_T;chainID=2 7 146759340 146759492 7 149547305 149547464 13938129 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff LUSC_1_T;chainID=2 7 146809224 146809420 7 152635776 152635932 13938458 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff LUSC_1_T;chainID=2 7 146903406 146903550 7 149800648 149800816 13939052 4 + + 0 0 1 1 150 127 1 0 1 INTRA cancer_singleSample LUSC_1_T 347 661 6 339 315 662 -8 15 20 25 0,4 extreme_oneoff LUSC_1_T;chainID=2 7 148283441 148283617 7 149969193 149969406 13948747 8 - - 0 0 1 1 150 74 1 0 1 INTRA cancer_singleSample LUSC_1_T 20 244 255 489 225 514 -11 1 16 34 0,0384615 extreme_oneoff LUSC_1_T;chainID=2 7 148285689 148285814 7 149969607 149969786 13948753 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_1_T 85 546 541 791 245 791 5 9 14 31 0,285714 extreme_oneoff LUSC_1_T;chainID=2 7 148411717 148411973 7 148413089 148413312 13949580 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 5 292 290 761 285 818 2 4 25 26 0,135593 simple NA 7 148544486 148544783 7 148593429 148593714 13950176 44 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T 0 609 608 771 162 788 1 38 31 24 0,580153 simple NA 7 148554814 148554917 7 148721825 148722034 13950241 5 - + 0 0 1 1 150 96 1 0 1 DUP cancer_singleSample OV_3_T 170 606 36 172 134 613 2 5 14 58 0,121951 simple NA 7 148572679 148572900 7 148576093 148576354 13950327 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 148620869 148621018 7 148924999 148925120 13950554 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 148722632 148722888 7 148733733 148733955 13950959 5 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 148876996 148877281 7 148877771 148877926 13951498 5 + - 0 0 1 1 150 139 1 0 1 DEL cancer_singleSample OV_10_T 24 383 384 419 36 461 -1 NA NA NA NA mild_oneoff OV_10_T;chainID=1 7 148920071 148920287 7 148921781 148921957 13951620 6 - + 0 1 1 1 115 150 1 0 1 DUP cancer_singleSample BRCA_6_T 4 447 447 758 311 759 0 5 25 10 0,222222 simple NA 7 149152484 149152692 7 149675795 149676003 13952578 6 + + 0 0 1 1 150 92 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 149340242 149340434 7 149442191 149442323 13953730 5 - - 3 1 1 1 109 150 1 0 1 INV cancer_singleSample LUSC_1_T 0 405 406 558 153 568 -1 7 6 13 0,424242 simple NA 7 150015628 150015776 7 150016691 150016820 13960846 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 263 491 33 269 222 502 6 9 8 6 0,5625 simple NA 7 150314480 150314640 7 151582417 151582645 13962708 5 + - 0 0 1 1 132 149 1 0 1 INTRA cancer_singleSample GBM_10_T 11 177 174 764 163 764 3 5 16 7 0,30303 extreme_oneoff GBM_10_T;chainID=1 7 150420079 150420204 7 151434716 151434963 13963419 9 - - 0 0 1 1 150 128 1 0 1 INTRA cancer_singleSample GBM_10_T 497 746 0 497 249 746 0 6 19 7 0,315789 extreme_oneoff GBM_10_T;chainID=1 7 150539579 150539734 7 150543884 150544083 13964069 6 + - 0 1 1 1 136 150 1 0 1 DEL cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 150680338 150680468 7 150913203 150913336 13964542 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 0 605 600 808 203 918 5 11 31 24 0,285714 simple NA 7 150748973 150749158 7 150763332 150763590 13964690 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T 1 653 651 843 190 870 2 5 13 7 0,333333 simple NA 7 151173861 151174082 7 152631575 152631820 13966005 14 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_1_T 313 923 81 301 221 923 -12 12 15 17 0,428571 extreme_oneoff LUSC_1_T;chainID=2 7 151299974 151300228 7 151300696 151300965 13966536 9 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 0 597 120 977 120 985 477 2 0 4 0,5 simple NA 7 151439895 151440011 7 151601368 151601505 13967015 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_10_T;chainID=1 7 151495821 151496048 7 151603027 151603232 13967144 9 - - 0 0 1 1 150 134 1 0 1 INV cancer_singleSample GBM_10_T 29 391 391 828 362 828 0 1 16 13 0,0645161 extreme_oneoff GBM_10_T;chainID=1 7 151577493 151577733 7 151594688 151594941 13967285 11 + - 0 0 1 1 147 150 1 0 1 DEL cancer_singleSample GBM_10_T 589 659 0 592 67 667 3 NA NA NA NA extreme_oneoff GBM_10_T;chainID=1 7 151584022 151584253 7 151601720 151601819 13967304 4 + + 0 0 1 1 150 147 1 0 1 INV cancer_singleSample GBM_10_T 418 721 38 422 299 729 4 3 12 8 0,230769 extreme_oneoff GBM_10_T;chainID=1 7 151716734 151716946 7 152725830 152725993 13968022 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_1_T 27 154 213 715 128 716 -59 12 24 22 0,342857 extreme_oneoff LUSC_1_T;chainID=2 7 151739351 151739524 7 151834131 151834300 13968175 5 + - 0 0 1 1 123 150 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 7 152097628 152097896 7 152148979 152149257 13970505 6 + - 0 0 1 1 150 113 1 0 1 DEL cancer_singleSample BRCA_3_T 167 339 337 932 170 937 2 17 11 16 0,557377 simple NA 7 152721560 152721732 7 152737110 152737250 13973576 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_1_T 353 540 0 320 188 541 -33 11 18 26 0,333333 extreme_oneoff LUSC_1_T;chainID=2 7 153298271 153298519 7 153304172 153304464 13977554 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 444 799 2 445 354 801 1 15 31 21 0,365854 simple NA 7 154056741 154056999 7 154058688 154058908 13981592 21 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 542 816 18 546 270 840 4 3 16 10 0,1875 simple NA 7 154486451 154486741 7 154620825 154621073 13983801 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 238 834 0 238 238 834 0 5 11 9 0,333333 simple NA 7 154751221 154751402 7 155128712 155128948 13984790 10 + - 1 0 1 1 141 145 1 0 1 DEL cancer_singleSample GBM_10_T 257 477 4 259 218 495 2 4 7 20 0,228571 mild_oneoff GBM_10_T;chainID=4 7 154783139 154783323 7 154807210 154807463 13984886 10 - + 0 0 1 1 140 150 1 0 1 DUP cancer_singleSample GBM_10_T 0 579 577 772 193 817 2 1 8 9 0,105263 mild_oneoff GBM_10_T;chainID=4 7 154805745 154805877 7 155580617 155580776 13984968 8 + - 0 0 1 1 150 137 1 0 1 DEL cancer_singleSample GBM_10_T 582 659 0 584 75 702 2 5 4 13 0,37037 mild_oneoff GBM_10_T;chainID=4 7 154806472 154806663 7 155412342 155412456 13984972 6 - + 0 0 1 1 150 134 1 0 1 DUP cancer_singleSample GBM_10_T 183 581 5 183 178 599 0 3 2 15 0,26087 mild_oneoff GBM_10_T;chainID=4 7 155094402 155094626 7 155411165 155411394 13986034 17 - - 0 0 1 1 149 150 1 0 1 INV cancer_singleSample GBM_10_T 0 594 593 949 355 979 1 7 14 11 0,358974 mild_oneoff GBM_10_T;chainID=4 7 155412336 155412406 7 155481146 155481221 13987200 3 - + 0 0 1 1 150 80 1 0 1 DUP cancer_singleSample GBM_10_T 63 187 186 433 123 663 1 6 11 64 0,137931 mild_oneoff GBM_10_T;chainID=4 7 156199064 156199316 7 156250647 156250856 13990003 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 620 870 0 626 244 886 6 10 12 8 0,5 simple NA 7 156568144 156568390 7 157359343 157359629 13991650 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 45 348 342 462 114 462 6 9 21 21 0,3 simple NA 7 156688332 156688591 7 156689550 156689805 13992251 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 607 607 901 294 928 0 7 14 20 0,291667 simple NA 7 158241230 158241458 7 158247722 158247918 14006471 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 2089423 2089668 8 4425721 4426003 15365986 16 + - 1 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T 0 634 634 818 184 840 0 6 5 12 0,413793 simple NA 8 2617217 2617486 8 2618574 2618855 15398065 5 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 600 1122 0 601 521 1159 1 12 9 11 0,545455 simple NA 8 3146499 3146638 8 3171292 3171425 15430654 4 + + 0 0 1 1 133 150 1 0 1 INV cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 3375980 3376115 8 3665867 3665978 15448930 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 684 828 0 684 144 1161 0 4 6 5 0,421053 simple NA 8 3410367 3410521 8 3855086 3855465 15451992 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 608 1244 0 611 608 1244 3 5 3 3 0,625 simple NA 8 3489392 3489559 8 3505110 3505277 15459413 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 0 647 649 1263 615 1263 -2 9 3 14 0,514286 simple NA 8 3605592 3605755 8 3664759 3664920 15469060 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 3613933 3614148 8 3682026 3682222 15469814 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 287 687 3 289 284 705 2 3 14 2 0,272727 simple NA 8 3848960 3849118 8 4146239 4146401 15486938 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 0 631 628 1332 628 1332 3 5 3 5 0,555556 simple NA 8 4060434 4060563 8 4206400 4206620 15504586 4 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 184 393 25 186 159 418 2 1 23 16 0,0487805 simple NA 8 4271619 4271876 8 4273331 4273537 15517067 15 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 3 577 576 1023 446 1026 1 21 6 11 0,711864 simple NA 8 4272972 4273259 X 128400742 128401022 2610516 11 - - 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_4_T 0 186 174 775 174 775 12 15 17 20 0,447761 simple NA 8 4549704 4549840 8 4613799 4613936 15556061 6 - + 4 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 5724086 5724276 8 5727613 5727807 15729920 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 610 1284 0 611 610 1284 1 5 16 17 0,232558 simple NA 8 7246586 7246831 8 8395094 8395342 15873054 7 - + 2 1 1 1 79 150 1 0 1 INTRA cancer_singleSample OV_5_T 589 858 0 590 268 879 1 1 43 19 0,03125 simple NA 8 9288578 9288692 8 11186694 11186841 16096152 3 - - 0 0 1 1 117 150 1 0 1 INTRA cancer_singleSample BRCA_3_T 594 713 13 594 119 744 0 21 20 44 0,396226 simple NA 8 10220372 10220555 8 10223227 10223405 14940727 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 29 258 257 876 228 878 1 0 6 10 0 simple NA 8 13018267 13018437 8 13026763 13026960 15206410 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 673 1278 0 675 603 1278 2 10 0 6 0,769231 simple NA 8 13035897 13036056 8 13100289 13100510 15208642 5 + + 1 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_9_T 155 366 2 161 153 437 6 2 3 12 0,210526 simple NA 8 15578664 15578836 8 25009349 25009523 15332292 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_7_T 153 757 7 156 146 757 3 6 4 16 0,375 simple NA 8 17537452 17537699 8 17563672 17564269 15345054 23 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 20185512 20185721 8 20194349 20195618 15361230 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 20534112 20534324 8 68150570 68150840 15363534 28 + + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 8 21283395 21283630 8 21292525 21293518 15369190 3 + + 0 0 1 1 150 117 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 21680271 21680509 8 21682784 21683007 15371026 10 + - 0 0 1 1 150 100 1 0 1 DEL cancer_singleSample LUSC_13_T 528 785 13 536 249 814 8 1 5 13 0,1 simple NA 8 22768378 22768512 8 26470293 26470552 15375172 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 23038720 23038983 8 130379333 130379576 15376719 10 - - 0 0 1 1 146 137 1 0 1 INTRA cancer_singleSample OV_10_T 0 581 592 659 68 683 -11 NA NA NA NA simple NA 8 23044076 23044316 8 130384022 130384271 15376766 9 + + 1 0 1 1 150 139 1 0 1 INTRA cancer_singleSample OV_10_T 9 535 534 758 223 766 1 5 7 16 0,30303 simple NA 8 25012061 25012243 8 25088059 25088267 15390417 6 - - 0 0 1 1 140 139 1 0 1 INV cancer_singleSample LUSC_8_T 605 1016 0 608 408 1020 3 9 17 34 0,26087 simple NA 8 25012176 25012288 8 26589912 26590142 15390421 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_8_T 0 627 628 1052 425 1052 -1 4 18 29 0,145455 simple NA 8 25203070 25203178 8 25203787 25203896 15391641 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 7 165 164 742 157 769 1 4 15 7 0,266667 simple NA 8 25602217 25602435 8 25617848 25618076 15394228 6 + - 0 0 1 1 150 129 1 0 1 DEL cancer_singleSample LUAD_5_T 535 684 20 539 145 703 4 4 11 18 0,216216 simple NA 8 25805820 25806022 8 26469741 26469956 15395865 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 620 840 0 621 219 840 1 3 37 33 0,0789474 simple NA 8 28161037 28161194 8 28189370 28189623 15409662 8 + - 0 0 1 1 137 150 1 0 1 DEL cancer_singleSample BRCA_3_T 365 706 200 368 165 706 3 17 15 22 0,478873 simple NA 8 28232935 28233204 8 28237595 28237851 15409923 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 601 920 0 608 312 969 7 16 7 14 0,603774 simple NA 8 28735877 28736104 8 40416932 40417160 15412902 27 - + 0 0 1 1 141 143 1 0 1 INTRA cancer_singleSample OV_3_T 0 394 392 596 202 630 2 11 11 9 0,52381 simple NA 8 28742337 28742525 8 124227641 124227865 15412915 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_10_T 414 654 15 418 236 659 4 7 10 19 0,325581 simple NA 8 28952508 28952611 8 28963908 28964151 15414034 7 - - 0 0 1 1 150 36 1 0 1 INV cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 28957793 28958074 8 74935307 74935590 15414082 45 - + 0 3 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 8 29005406 29005711 8 67292099 67292412 15414292 180 + + 1 1 1 1 146 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 8 29124337 29124588 8 34157757 34158243 15414990 36 - + 0 0 1 1 117 140 1 0 1 INTRA cancer_singleSample LUSC_6_T 609 940 0 611 329 943 2 20 11 15 0,606061 simple NA 8 30016638 30016948 8 32053657 32053954 15420899 24 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_11_T;chainID=10 8 30256497 30256644 8 30317077 30317210 15422566 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 106 493 8 110 98 493 4 2 28 25 0,0701754 simple NA 8 30469746 30470044 8 107146687 107146982 15423668 37 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 602 600 793 191 817 2 17 14 25 0,465753 simple NA 8 30795608 30795858 8 100007099 100007369 15425858 18 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 276 391 33 276 115 430 0 18 13 26 0,48 simple NA 8 30815444 30815687 8 35689590 35689852 15426047 16 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 606 815 0 608 207 817 2 12 8 18 0,48 mild_stepwise LUSC_11_T;chainID=10 8 30822245 30822431 9 34141019 34141173 16156989 3 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 31229273 31229390 8 31939151 31939256 15428791 4 + + 1 0 1 1 139 146 1 0 1 INV cancer_singleSample OV_3_T 14 494 522 982 461 1019 -28 6 10 0 0,545455 simple NA 8 31718125 31718331 8 32002772 32002945 15432511 5 - + 3 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_9_T 638 1132 0 642 490 1134 4 2 4 13 0,190476 simple NA 8 31844883 31845127 8 35690110 35690371 15433434 16 + - 0 0 1 1 150 144 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 609 608 863 254 880 1 17 16 12 0,548387 mild_stepwise LUSC_11_T;chainID=10 8 32038323 32038596 8 33267234 33267491 15435147 21 + + 0 0 1 1 150 137 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 609 609 781 172 782 0 14 30 16 0,378378 mild_stepwise LUSC_11_T;chainID=10 8 32038490 32038758 8 39454626 39454903 15435154 27 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 608 608 707 99 721 0 17 27 31 0,369565 mild_stepwise LUSC_11_T;chainID=10 8 32067024 32067347 8 36595361 36595650 15435366 31 - + 0 0 1 1 142 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 600 869 0 604 265 872 4 20 10 14 0,625 mild_stepwise LUSC_11_T;chainID=10 8 32169978 32170185 8 32179140 32179332 15436193 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 12 542 549 921 373 924 -7 1 5 9 0,125 simple NA 8 32838221 32838439 8 32983172 32983416 15441418 17 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 24 418 419 633 215 657 -1 8 1 7 0,666667 simple NA 8 33661611 33661869 8 34736410 34736701 15447886 17 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 244 565 4 244 240 580 0 8 15 26 0,280702 simple NA 8 33913747 33913927 8 33921720 33921930 15450261 8 - + 0 0 1 1 137 150 1 0 1 DUP cancer_singleSample LUSC_13_T 217 341 35 216 125 525 -1 7 18 16 0,291667 simple NA 8 34156900 34157260 8 37599362 37599654 15452621 34 - - 0 0 1 1 78 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 0 618 616 811 193 811 2 11 18 14 0,407407 simple NA 8 34185325 34185419 8 34188147 34188358 15452938 3 + - 0 0 1 1 150 114 1 0 1 DEL cancer_singleSample OV_6_T 0 594 592 886 292 903 2 2 8 12 0,166667 simple NA 8 34729607 34729874 8 89565949 89566244 15457951 25 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 25 389 390 700 311 701 -1 13 25 17 0,382353 simple NA 8 34936269 34936407 8 39154536 39154735 15459825 3 - - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 35265574 35265810 8 38399427 38399671 15462341 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_12_T;chainID=2 8 35277099 35277336 8 50640134 50640377 15462405 6 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 6 501 500 782 281 782 1 8 9 29 0,296296 simple NA 8 35360052 35360200 8 51433859 51434072 15463088 4 + + 0 0 1 1 125 150 1 0 1 INTRA cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_12_T;chainID=2 8 35411712 35411919 8 35412740 35412960 15463306 8 + - 0 0 1 1 143 135 1 0 1 DEL cancer_singleSample OV_10_T 0 590 584 943 353 950 6 10 5 7 0,625 simple NA 8 35684745 35685065 8 37239348 37239641 15465389 18 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_11_T;chainID=10 8 36145621 36145770 8 36152600 36152730 15469875 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 9 627 634 1231 598 1231 -7 13 19 21 0,393939 simple NA 8 36617106 36617452 8 36848410 36848681 15474440 55 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_8_T 133 295 294 495 161 515 1 29 39 60 0,369427 mild_stepwise LUSC_8_T;chainID=2 8 36638289 36638540 8 36651624 36652014 15474595 26 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_8_T;chainID=2 8 36821693 36821984 8 38249781 38250095 15476381 84 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_8_T;chainID=2 8 37080997 37081175 8 37083004 37083122 15478613 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 641 633 962 321 983 8 3 10 10 0,230769 simple NA 8 37194039 37194272 8 37877951 37878216 15479608 24 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 0 610 607 672 62 706 3 NA NA NA NA mild_stepwise LUSC_11_T;chainID=10 8 37689652 37689890 8 37727113 37727365 15482278 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 413 855 1 414 412 927 1 0 6 22 0 simple NA 8 37795162 37795431 8 122870308 122870556 15482774 10 - - 1 0 1 1 148 150 1 0 1 INTRA cancer_singleSample OV_4_T 596 748 0 598 150 796 2 14 17 37 0,341463 simple NA 8 37830432 37830542 8 37838504 37838615 15483031 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 120 610 21 121 99 696 1 2 6 31 0,097561 simple NA 8 38695687 38695895 8 41877200 41877434 15488254 7 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample READ_2_T 606 920 0 609 311 920 3 3 13 16 0,171429 simple NA 8 39143460 39143636 8 42627780 42627971 15491276 11 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_17_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 39195792 39196031 8 39198405 39198683 15491590 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 619 623 847 225 862 -4 6 2 0 0,857143 simple NA 8 39780789 39781030 8 40114054 40114289 15497442 7 - + 0 0 1 1 124 150 1 0 1 DUP cancer_singleSample LUSC_11_T 22 425 428 767 340 786 -3 10 22 27 0,289855 simple NA 8 39916180 39916432 8 42339861 42340109 15498388 17 + - 0 0 1 1 144 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 592 752 3 593 159 829 1 27 11 20 0,635294 simple NA 8 40139844 40140087 8 42378299 42378539 15500523 4 + - 0 2 1 1 150 103 1 0 1 INTRA cancer_singleSample OV_4_T 444 840 46 497 343 846 53 0 9 3 0 simple NA 8 40297276 40297380 8 40632672 40632874 15501663 3 - + 2 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_9_T 649 911 0 635 263 1040 -14 4 19 15 0,190476 simple NA 8 40411684 40411912 8 40798941 40799162 15502732 23 - - 0 0 1 1 149 137 1 0 1 INV cancer_singleSample OV_3_T 27 195 193 376 166 376 2 11 8 11 0,536585 simple NA 8 40928546 40928809 8 41003986 41004271 15507063 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 7 528 526 667 139 667 2 9 27 21 0,272727 simple NA 8 41340038 41340277 8 43163128 43163338 15509889 7 - - 0 1 1 1 60 105 1 0 1 INTRA cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 41830249 41830492 8 131744680 131744825 15511844 11 - + 0 0 1 1 150 148 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 41875607 41875746 8 42627008 42627122 15512241 4 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample GBM_17_T 338 569 94 338 231 745 0 10 18 6 0,454545 simple NA 8 42151270 42151425 8 42152736 42152896 15513910 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 42685254 42685469 8 42687011 42687245 15516889 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 11 317 312 565 248 650 5 8 24 10 0,32 simple NA 8 42993739 42994028 8 43003998 43004162 15518551 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_2_T 578 825 0 563 248 908 -15 2 14 4 0,181818 simple NA 8 43336860 43336979 8 43344779 43344883 15520929 3 + - 0 0 1 1 60 150 1 0 1 DEL cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 43337357 43337530 8 43344826 43344971 15520933 3 - + 0 0 1 1 150 85 1 0 1 DUP cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 43406481 43406703 8 58564988 58565145 15521782 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_12_T;chainID=2 8 47830491 47830639 8 102007921 102008053 15654291 3 - - 6 0 1 1 112 150 1 0 1 INTRA cancer_singleSample OV_4_T 12 492 492 962 470 963 0 7 2 19 0,4 simple NA 8 48146824 48147068 8 48157272 48158120 15656426 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 48526442 48526865 8 48538969 48539875 15659069 3 - - 0 0 1 1 150 46 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 48672087 48672281 8 48675817 48676025 15659857 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 0 612 610 678 66 707 2 NA NA NA NA simple NA 8 48753932 48754179 8 48946055 48946228 15660167 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_8_T 260 373 12 253 114 377 -7 6 43 37 0,130435 simple NA 8 49973437 49973523 8 49974040 49974247 15667189 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 49978888 49979139 8 50382634 50382931 15667216 10 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 50618665 50619062 9 107481422 107481532 16185220 3 + + 0 1 1 1 53 78 1 0 1 INTER cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 51430552 51430789 8 77986622 77986870 15681447 13 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_12_T;chainID=2 8 51503344 51503483 8 65035429 65035551 15682202 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_12_T;chainID=2 8 51546915 51547137 8 58095622 58095865 15682502 6 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_12_T;chainID=2 8 51830044 51830178 8 58157968 58158199 15686205 4 + + 0 0 1 1 36 150 1 0 1 INTRA cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_12_T;chainID=2 8 51867371 51867667 8 51871294 51871564 15686759 27 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 614 613 1216 602 1216 1 14 5 9 0,666667 simple NA 8 52731660 52731940 8 52742434 52742665 15693662 8 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 53203033 53203300 8 58150159 58150445 15697243 16 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 53244563 53244785 8 53447048 53447216 15697615 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 907 991 987 1114 80 1351 4 8 26 18 0,266667 simple NA 8 53358053 53358262 8 64487747 64488011 15698328 9 + - 2 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_1_T 621 1018 0 621 397 1045 0 7 12 4 0,466667 simple NA 8 53408611 53408811 8 62531607 62531822 15698651 8 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 53414079 53414315 8 62481014 62481289 15698692 10 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 53414859 53415160 8 54511860 54512140 15698699 32 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 53449969 53450322 8 56054000 56054224 15698951 25 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 13 484 483 771 287 771 1 8 26 12 0,296296 simple NA 8 53761525 53761780 8 56678932 56679165 15701351 15 + - 0 0 1 1 111 107 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 53763615 53763923 8 56387418 56387710 15701368 51 - + 0 0 1 1 148 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 606 667 0 607 60 670 1 NA NA NA NA simple NA 8 54058798 54059083 8 58635272 58635492 15703946 10 + - 0 2 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T 0 631 627 951 320 951 4 5 11 12 0,30303 simple NA 8 54646823 54647073 8 55185909 55186214 15709192 37 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 54915510 54915686 8 54937261 54937482 15710906 6 - - 1 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 55087799 55088032 8 95552485 95552676 15711865 14 - + 0 0 1 1 125 150 1 0 1 INTRA cancer_singleSample OV_3_T 26 119 117 193 74 202 2 NA NA NA NA simple NA 8 55383787 55383980 8 55388547 55388736 15713935 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 62 608 603 1119 511 1120 5 12 24 29 0,311688 simple NA 8 55558726 55558929 8 61397256 61397502 15715324 8 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 161 503 15 161 146 503 0 5 45 28 0,120482 simple NA 8 55592406 55592559 8 95121549 95121683 15715797 8 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 55648016 55648158 8 55648932 55649087 15716441 6 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 404 716 8 410 306 716 6 8 34 48 0,163265 simple NA 8 55825036 55825247 8 64220630 64220839 15718105 12 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 56115962 56116125 8 56125013 56125195 15720484 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 12 267 264 869 252 869 3 3 22 24 0,115385 simple NA 8 56173699 56174038 8 59023740 59024126 15720956 29 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 30 362 364 897 333 898 -2 0 34 18 0 simple NA 8 56174030 56174244 8 59153087 59153248 15720957 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 56473969 56474356 8 56486979 56487457 15723851 3 - - 0 0 1 1 120 110 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 56546702 56546848 8 56558315 56558779 15724607 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 56593779 56593986 8 61911374 61911562 15725248 5 + + 0 2 1 1 150 145 1 0 1 INTRA cancer_singleSample OV_11_T 620 696 0 621 75 732 1 3 10 21 0,162162 simple NA 8 56747467 56747710 8 56748782 56749006 15726356 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 54 425 423 852 369 852 2 7 17 19 0,28 simple NA 8 56806304 56806458 8 58320835 58321010 15726724 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_11_T;chainID=11 8 56817723 56817972 8 56978486 56978770 15726818 12 - + 0 0 1 1 141 150 1 0 1 DUP cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_11_T;chainID=11 8 56818464 56818707 8 57091194 57091429 15726822 12 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_11_T;chainID=11 8 56923612 56923805 8 107513783 107513972 15727605 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 56926166 56926408 8 56985749 56985973 15727636 7 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_11_T;chainID=11 8 56977247 56977543 8 57090199 57090450 15728008 24 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_11_T;chainID=11 8 57083616 57083867 8 65975247 65975461 15728593 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 604 817 0 605 212 830 1 5 46 30 0,116279 mild_stepwise LUSC_11_T;chainID=11 8 57088161 57088413 8 57101398 57101632 15728625 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 643 642 1042 399 1101 1 0 26 12 0 simple NA 8 57164652 57164837 8 57399424 57399666 15729296 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 0 611 609 715 104 735 2 21 33 42 0,358974 mild_stepwise LUSC_11_T;chainID=11 8 57373046 57373292 8 57381252 57381475 15731370 9 + - 0 0 1 1 146 150 1 0 1 DEL cancer_singleSample OV_10_T 514 1124 2 517 512 1124 3 5 4 10 0,416667 simple NA 8 57543212 57543296 8 65876868 65877053 15732893 4 + + 0 0 1 1 100 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_11_T;chainID=11 8 58142173 58142411 8 58376044 58376299 15739120 9 - - 0 0 1 1 150 143 1 0 1 INV cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_12_T;chainID=2 8 58532390 58532533 8 65042826 65042990 15742733 6 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_12_T;chainID=2 8 58718449 58718715 8 58723376 58723647 15744608 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 382 851 32 383 350 855 1 11 5 5 0,6875 simple NA 8 59384511 59384785 8 59388294 59388532 15750394 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 5 609 607 1050 441 1074 2 5 26 25 0,163934 simple NA 8 60065618 60065884 8 60066827 60067171 15755606 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 61103096 61103253 8 70685450 70685603 15767105 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 0 617 617 759 142 759 0 7 14 22 0,28 simple NA 8 61148774 61148893 8 61672193 61672517 15767539 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 61804094 61804255 8 62076306 62076430 15772251 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_6_T 302 502 24 302 200 608 0 6 24 21 0,210526 simple NA 8 62352000 62352155 8 63198727 63198888 15776774 6 - + 2 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_11_T 601 1023 0 605 418 1029 4 1 10 2 0,142857 simple NA 8 62877792 62878586 8 62891197 62891639 15781478 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 63227109 63227313 8 124234916 124235081 15785496 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_7_T 78 453 452 540 87 669 1 6 16 39 0,179104 simple NA 8 64625129 64625329 8 64636609 64636849 15799309 9 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 630 752 0 631 121 771 1 15 7 7 0,681818 simple NA 8 66748657 66748811 8 67059823 67059985 15819202 6 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_1_T 316 739 11 319 305 767 3 5 23 25 0,172414 mild_oneoff BRCA_1_T;chainID=2 8 66782843 66783024 8 116120305 116120515 15819471 3 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_7_T 46 264 259 569 213 586 5 5 29 23 0,16129 simple NA 8 67053573 67053813 8 67777619 67777875 15821740 14 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 67279764 67279938 8 74110775 74110990 15823757 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 8 67472632 67472782 8 67476197 67476313 15824928 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 25 340 338 481 141 517 2 15 21 23 0,405405 simple NA 8 69760298 69760452 8 95729100 95729280 15845952 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T 580 776 55 583 193 778 3 14 19 25 0,388889 simple NA 8 70999511 70999822 8 82108047 82108351 15857664 35 - + 1 1 1 1 146 140 1 0 1 INTRA cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 71056983 71057120 8 71106460 71106641 15858084 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 71142408 71142696 8 73632610 73632912 15859048 30 - + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 71747190 71747478 8 71859325 71859598 15865494 16 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_1_T 340 750 1 341 339 763 1 6 16 26 0,222222 simple NA 8 71818464 71818675 8 71846372 71846619 15866471 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 0 609 612 1001 390 1022 -3 2 14 21 0,102564 simple NA 8 72137092 72137260 8 73245087 73245298 15869932 3 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T 8 413 412 1030 404 1039 1 5 27 12 0,204082 extreme_stepwise OV_11_T;chainID=1 8 72266323 72266569 X 97733466 97733700 2646846 5 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T 425 754 291 431 134 809 6 15 25 7 0,483871 simple NA 8 72296017 72296156 8 113244575 113244806 15871223 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 73076069 73076345 8 73101612 73102006 15879576 9 + - 0 1 1 1 127 150 1 0 1 DEL cancer_singleSample LUSC_6_T 174 521 4 176 170 537 2 6 33 28 0,164384 simple NA 8 73194581 73194741 8 74195239 74195410 15880987 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 73783527 73783639 8 127910482 127910664 15888015 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_11_T;chainID=2 8 74171361 74171578 8 74427411 74427662 15891935 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 74581473 74581660 8 81405558 81405818 15895920 6 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 75254982 75255121 8 75256241 75256386 15900825 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 738 1175 0 740 435 1203 2 2 16 15 0,114286 simple NA 8 75310342 75310616 8 75330490 75330968 15901116 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 75934152 75934462 8 76104164 76104464 15908074 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 0 611 608 1215 604 1215 3 4 25 18 0,156863 simple NA 8 76555757 76556006 8 99257929 99258094 15914180 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_1_T 0 647 646 875 228 895 1 4 14 23 0,177778 simple NA 8 77607405 77607529 8 77614430 77614568 15925413 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 371 637 7 374 263 671 3 1 38 45 0,0235294 simple NA 8 77957237 77957297 8 78003437 78003497 15929396 3 - + 0 0 1 1 150 110 1 0 1 DUP cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 78125853 78126080 8 78138561 78138799 15931261 11 + - 0 2 1 1 150 147 1 0 1 DEL cancer_singleSample OV_5_T 465 640 12 459 176 640 -6 6 15 17 0,272727 simple NA 8 78709130 78709367 8 80010226 80010451 15938339 4 + - 2 0 1 1 146 150 1 0 1 INTRA cancer_singleSample OV_1_T 621 979 0 625 354 979 4 1 12 14 0,0714286 simple NA 8 79550212 79550399 8 82220340 82220536 15948742 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 203 808 35 203 168 808 0 9 14 28 0,3 extreme_oneoff LUAD_5_T;chainID=5 8 79726167 79726318 8 79739977 79740172 15950455 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 79980228 79980483 8 79990839 79991090 15953957 3 + + 1 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 81284455 81284643 8 81293598 81294533 15968392 3 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 81778729 81778964 8 81781088 81781324 15972345 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 0 208 203 371 163 413 5 11 28 26 0,289474 simple NA 8 82030224 82030481 8 99074705 99074909 15974096 6 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff LUAD_5_T;chainID=5 8 83355083 83355238 8 83356886 83357120 15987660 3 + - 3 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_11_T 608 1064 0 609 455 1122 1 5 15 7 0,3125 simple NA 8 83953728 83953859 8 83962534 83962662 15993947 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T 652 1239 0 646 588 1239 -6 2 14 16 0,117647 simple NA 8 84107067 84107261 8 84108005 84108183 15995441 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 5 590 585 678 88 694 5 0 2 4 0 simple NA 8 84108348 84108555 8 87678806 87679013 15995448 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_7_T 142 549 545 636 87 690 4 5 23 26 0,169492 simple NA 8 84119064 84119279 8 111194191 111194406 15995518 8 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 24 233 233 761 209 805 0 11 23 11 0,392857 simple NA 8 84779635 84779794 8 84782644 84782831 16002328 5 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 0 569 572 745 174 754 -3 13 30 23 0,329114 simple NA 8 85367585 85367807 8 85404778 85404989 16008061 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 0 616 616 878 262 879 0 2 30 24 0,0689655 simple NA 8 85621023 85621305 8 85622093 85622372 16010485 18 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 608 609 849 241 851 -1 14 3 4 0,8 simple NA 8 86088856 86089116 8 86108483 86108718 16014997 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 87438832 87439029 8 87470178 87470398 16043645 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 0 605 603 889 284 897 2 2 24 26 0,0740741 simple NA 8 88297170 88297414 8 108126671 108126959 16051019 15 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 148 446 0 150 148 625 2 6 4 37 0,226415 extreme_stepwise LUSC_11_T;chainID=8 8 88582474 88582629 8 99074458 99074622 16053619 6 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff LUAD_5_T;chainID=5 8 88951430 88951707 8 88953495 88953727 16056726 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 385 541 2 386 155 974 1 5 18 31 0,169492 simple NA 8 89017420 89017708 8 89027636 89027924 16057206 23 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 594 900 0 597 303 915 3 13 4 6 0,722222 simple NA 8 90094573 90094796 8 90246384 90246730 16069062 6 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 90354419 90354649 8 142905156 142905364 16071878 8 - + 0 0 1 1 144 139 1 0 1 INTRA cancer_singleSample OV_10_T 82 465 19 84 63 485 2 18 15 27 0,461538 simple NA 8 90793857 90793991 8 90857559 90857687 16075905 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 90933173 90933306 8 91401864 91401984 16077124 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 744 952 0 748 204 972 4 8 21 26 0,253968 simple NA 8 91515270 91515431 8 91515683 91515856 16083252 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 0 581 564 713 132 713 17 19 0 0 1 simple NA 8 91875887 91876053 8 145769734 145769897 16086623 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_9_T 8 316 315 815 307 815 1 6 11 8 0,387097 simple NA 8 92079887 92080096 8 92094497 92094693 16088469 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 560 739 247 560 179 744 0 1 27 6 0,0571429 simple NA 8 92349278 92349432 8 137624845 137625056 16091075 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 93171220 93171543 8 93302060 93302365 16098140 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 94231374 94231566 8 94241969 94242162 16108755 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 94502020 94502157 8 127512538 127512758 16110947 25 + - 0 0 1 1 146 149 1 0 1 INTRA cancer_singleSample OV_3_T 287 887 56 263 208 1087 -24 16 16 19 0,477612 mild_oneoff OV_3_T;chainID=5 8 94502360 94502430 8 127517116 127517346 16110949 6 - + 0 0 1 1 142 150 1 0 1 INTRA cancer_singleSample OV_3_T 604 691 0 605 86 731 1 2 3 25 0,125 mild_oneoff OV_3_T;chainID=5 8 95320546 95320720 8 98782007 98782290 16116929 9 - - 1 4 1 1 147 150 1 0 1 INTRA cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 95618666 95618864 8 95621611 95621804 16119030 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 229 414 410 694 181 700 4 4 14 32 0,148148 simple NA 8 95937944 95938193 8 96075894 96076163 16120800 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T 599 1082 0 599 483 1082 0 11 2 7 0,709677 simple NA 8 96863186 96863331 8 96866562 96866751 16128526 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 80 326 326 805 246 806 0 20 25 25 0,444444 simple NA 8 97030979 97031156 8 97037797 97037965 16130122 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 97388240 97388431 8 97395731 97395988 16132917 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 204 810 0 208 204 810 4 4 16 26 0,16 simple NA 8 97752416 97752600 8 98496269 98496428 16135586 7 + - 0 0 1 1 94 150 1 0 1 DEL cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 97935854 97936048 8 97941122 97941326 16137520 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 98068734 98068921 8 128135508 128135733 16139021 10 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_3_T 0 586 591 834 244 866 -5 2 16 9 0,137931 simple NA 8 98244339 98244416 8 116245846 116245949 16140866 4 - - 0 0 1 1 139 150 1 0 1 INTRA cancer_singleSample OV_3_T 38 203 200 916 162 916 3 1 6 7 0,133333 simple NA 8 98244536 98244614 8 116245712 116245800 16140869 3 - - 1 0 1 1 133 150 1 0 1 INTRA cancer_singleSample OV_3_T 38 203 200 780 162 780 3 2 10 3 0,235294 simple NA 8 99032769 99032973 8 99069374 99069655 16147326 11 - + 3 1 1 1 147 150 1 0 1 DUP cancer_singleSample OV_4_T 41 261 257 803 216 804 4 8 41 14 0,225352 simple NA 8 99049341 99049531 8 99050377 99050548 16147450 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 218 581 103 221 115 587 3 1 26 27 0,0363636 simple NA 8 99079686 99079928 8 143935120 143935369 16147526 5 - + 0 0 1 1 150 135 1 0 1 INTRA cancer_singleSample LUAD_5_T 0 574 592 1009 418 1031 -18 3 12 28 0,130435 extreme_oneoff LUAD_5_T;chainID=5 8 99234456 99234670 8 99282592 99282859 16148510 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 99694501 99694804 8 99699274 99699523 16152415 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 19 195 194 807 175 807 1 10 16 15 0,392157 simple NA 8 99994676 99994876 8 100008082 100008233 16154082 5 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_2_T 0 609 608 804 195 806 1 8 24 21 0,262295 simple NA 8 100859209 100859399 8 100891498 100891755 14932126 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 486 827 15 488 339 848 2 2 30 26 0,0666667 simple NA 8 100930410 100930656 8 101658994 101659235 14932556 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 35 474 474 668 194 697 0 9 8 22 0,375 simple NA 8 100944657 100944767 8 101061886 101061994 14932689 8 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_3_T 0 634 630 851 217 860 4 2 11 27 0,0952381 mild_oneoff OV_3_T;chainID=6 8 100953604 100953712 8 111083211 111083288 14932772 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_3_T;chainID=6 8 101305837 101306055 8 101306699 101306967 14935184 5 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 382 1015 23 380 358 1015 -2 10 27 29 0,263158 simple NA 8 101400838 101400991 8 101787119 101787254 14935879 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_17_T 79 496 496 1035 417 1035 0 5 17 16 0,232558 simple NA 8 102192949 102193098 8 102790775 102790947 14940649 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 261 557 36 265 225 561 4 12 17 25 0,363636 simple NA 8 102351262 102351712 8 102362934 102363963 14941918 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 102385447 102385663 8 102401598 102401887 14942174 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 103642045 103642279 8 104320986 104321218 14951965 12 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 609 748 0 609 139 755 0 5 35 33 0,128205 simple NA 8 104073086 104073304 8 121323738 121323965 14954796 16 - + 0 0 1 1 149 140 1 0 1 INTRA cancer_singleSample OV_3_T 584 844 0 585 259 873 1 11 20 12 0,407407 simple NA 8 104157460 104157696 8 104244011 104244211 14955281 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 350 684 35 328 294 684 -22 13 35 20 0,320988 simple NA 8 104378875 104379081 8 104383956 104384177 14957495 5 - + 0 0 1 1 105 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 104643187 104643390 8 131280477 131280704 14959795 18 + - 0 0 1 1 104 144 1 0 1 INTRA cancer_singleSample OV_3_T 28 390 387 558 168 561 3 6 22 18 0,230769 simple NA 8 104764707 104764861 8 104771806 104771929 14960879 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 106715180 106715397 8 107313332 107313542 14977692 9 - + 2 0 1 1 144 150 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 106765388 106765503 8 108011571 108011732 14978363 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_10_T 602 768 0 603 165 768 1 5 22 17 0,204082 simple NA 8 107343709 107343983 8 107349452 107349716 14984006 32 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 425 605 0 427 178 634 2 21 8 20 0,6 simple NA 8 108220184 108220472 8 113470305 113470592 14991998 20 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 609 604 788 179 817 5 10 37 38 0,210526 extreme_stepwise LUSC_11_T;chainID=8 8 108239463 108239747 8 114632971 114633222 14992238 16 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 143 742 2 145 141 742 2 10 21 38 0,253165 extreme_stepwise LUSC_11_T;chainID=8 8 108321258 108321465 8 108421281 108421431 14992919 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 0 512 509 868 356 898 3 2 45 36 0,0470588 extreme_stepwise LUSC_11_T;chainID=8 8 109228556 109228797 8 109233820 109234050 15001718 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 614 627 726 100 974 -13 15 29 15 0,405405 simple NA 8 109286480 109286604 8 109360194 109360330 15002194 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 49 204 201 736 152 772 3 9 21 29 0,264706 simple NA 8 109289877 109289989 8 109318787 109318903 15002210 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 109699862 109700112 8 119834715 119834929 15006821 8 - - 1 0 1 1 141 148 1 0 1 INTRA cancer_singleSample OV_3_T 501 729 36 502 227 730 1 6 15 10 0,324324 simple NA 8 110090243 110090450 8 110097239 110097420 15010713 5 - + 0 3 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 110107897 110108026 8 127378051 127378160 15010886 3 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 110702198 110702445 8 110704024 110704268 15015837 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 8 605 608 884 277 925 -3 10 16 3 0,512821 simple NA 8 110896469 110896713 8 110930517 110930765 15018219 8 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 0 613 611 778 165 893 2 5 27 28 0,153846 simple NA 8 111044885 111045025 8 118277994 118278171 15019582 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_3_T 582 843 0 581 262 864 -1 2 19 14 0,108108 mild_oneoff OV_3_T;chainID=6 8 111092851 111092961 8 119154463 119154587 15020009 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_3_T;chainID=6 8 111097065 111097221 8 111134497 111134650 15020035 4 - - 0 0 1 1 133 150 1 0 1 INV cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_3_T;chainID=6 8 111133190 111133303 8 118564980 118565100 15020406 4 + - 0 1 1 1 108 87 1 0 1 INTRA cancer_singleSample OV_3_T 107 204 0 108 96 232 1 5 19 48 0,12987 mild_oneoff OV_3_T;chainID=6 8 111153504 111153642 8 118419276 118419394 15020590 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_3_T 0 636 633 785 149 805 3 1 10 13 0,08 mild_oneoff OV_3_T;chainID=6 8 111233847 111234036 9 113290561 113290781 16154497 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 354 984 13 358 341 984 4 6 18 19 0,244898 simple NA 8 111252306 111252569 8 111256737 111257000 15021630 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 112292335 112292566 8 112712643 112712879 15032420 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 112368344 112368451 8 112460537 112460667 15033138 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_2_T 0 639 696 1387 640 1387 -57 5 16 21 0,212766 simple NA 8 112579021 112579148 8 119357183 119357299 15034946 4 + + 0 1 1 1 125 150 1 0 1 INTRA cancer_singleSample BRCA_7_T 458 637 222 460 177 679 2 12 28 32 0,285714 simple NA 8 113291365 113291653 8 113425172 113425445 15041634 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=8 8 113472733 113472948 8 117971598 117971842 15043317 14 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 396 820 42 396 354 835 0 8 29 33 0,205128 extreme_stepwise LUSC_11_T;chainID=8 8 114645051 114645291 8 114654041 114654286 15055093 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 114669103 114669290 8 117793487 117793697 15055298 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 396 394 703 307 732 2 7 31 21 0,212121 extreme_stepwise LUSC_11_T;chainID=8 8 114674861 114675091 8 116317149 116317366 15055350 9 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 194 487 37 196 157 573 2 21 29 28 0,424242 extreme_stepwise LUSC_11_T;chainID=8 8 115617954 115618223 8 117990698 117990975 15064581 10 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 62 667 0 59 60 667 -3 17 29 5 0,5 extreme_stepwise LUSC_11_T;chainID=8 8 115896967 115897086 8 116086758 116086998 15067039 3 - - 2 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_11_T 0 537 538 1191 538 1191 -1 0 3 17 0 simple NA 8 116412526 116412720 8 116414399 116414651 15071956 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 611 611 884 273 902 0 10 27 22 0,289855 simple NA 8 116671184 116671457 8 118018498 118018736 15074007 17 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 137 253 17 137 116 281 0 11 35 35 0,23913 extreme_stepwise LUSC_11_T;chainID=8 8 116716360 116716618 8 117986319 117986606 15074402 23 + + 0 0 1 1 150 86 1 0 1 INTRA cancer_singleSample LUSC_11_T 232 656 0 245 232 656 13 0 37 37 0 extreme_stepwise LUSC_11_T;chainID=8 8 117591336 117591472 8 117591766 117591922 15083369 4 + - 0 0 1 1 146 150 1 0 1 DEL cancer_singleSample OV_10_T 143 656 52 144 91 662 1 0 5 5 0 simple NA 8 118191193 118191309 8 118316071 118316225 15088746 3 + + 1 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_13_T 44 530 523 797 267 825 7 8 11 13 0,4 simple NA 8 118230469 118230683 8 118323094 118323275 15089165 8 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_13_T 0 619 618 1077 458 1093 1 8 12 9 0,432432 simple NA 8 118308706 118308843 8 118314515 118314693 15090189 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 118393058 118393189 8 118968303 118968479 15091075 4 - + 0 0 1 1 139 129 1 0 1 DUP cancer_singleSample OV_10_T 728 915 53 734 181 950 6 3 19 10 0,171429 simple NA 8 118529283 118529402 8 118532400 118532540 15092646 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T 22 345 343 444 99 444 2 3 2 12 0,3 simple NA 8 118981117 118981391 8 118987962 118988249 15098268 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 119205388 119205529 8 119206589 119206798 15100029 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 119356940 119357091 8 130367588 130367762 15101629 8 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_7_T 224 330 402 818 107 818 -72 16 37 11 0,4 simple NA 8 119776434 119776625 8 119865032 119865215 15105950 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 120426713 120426954 8 120440383 120440638 15113189 15 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T 608 1088 0 610 478 1124 2 4 29 24 0,131148 simple NA 8 121773016 121773188 8 122207029 122207198 15125377 6 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_12_T 610 680 0 609 71 680 -1 NA NA NA NA mild_oneoff BRCA_12_T;chainID=2 8 121784413 121784609 8 122177143 122177299 15125503 4 + + 1 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_12_T 108 447 65 101 37 641 -7 2 19 11 0,117647 mild_oneoff BRCA_12_T;chainID=2 8 121798599 121798842 8 122931088 122931281 15125693 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 649 733 0 641 85 733 -8 NA NA NA NA simple NA 8 121810705 121810830 8 121812627 121812739 15125847 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 387 1035 12 389 375 1036 2 3 14 22 0,142857 simple NA 8 122174147 122174323 8 122183274 122183422 15129706 6 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 0 271 275 406 132 572 -4 9 23 26 0,268657 mild_oneoff BRCA_12_T;chainID=2 8 122697947 122698137 8 122704727 122704903 15133768 6 - + 0 0 1 1 150 139 1 0 1 DUP cancer_singleSample BRCA_9_T 418 846 141 418 277 846 0 8 30 23 0,231884 simple NA 8 122957786 122957865 8 140371653 140371763 15135580 3 + - 0 1 1 1 141 150 1 0 1 INTRA cancer_singleSample OV_8_T 0 581 578 639 58 642 3 NA NA NA NA simple NA 8 122978869 122979047 8 123952606 123952810 15135718 6 - - 0 3 1 1 150 143 1 0 1 INV cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 123364736 123364850 8 123365223 123365356 15139459 5 + - 0 0 1 1 150 53 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 123501028 123501208 8 123503508 123503730 15141339 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 647 753 13 650 103 776 3 3 8 13 0,222222 simple NA 8 124691944 124692129 8 124693370 124693630 15151140 32 + - 0 0 1 1 149 142 1 0 1 DEL cancer_singleSample OV_3_T 40 274 272 539 232 597 2 14 11 10 0,571429 simple NA 8 125626822 125627062 8 125933347 125933600 15158958 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 20 560 561 662 102 668 -1 0 37 19 0 simple NA 8 125897409 125897677 8 125925812 125926085 15160734 12 - + 0 0 1 1 145 146 1 0 1 DUP cancer_singleSample OV_10_T 86 389 389 591 202 617 0 5 24 23 0,175439 simple NA 8 126108074 126108308 8 126360584 126360830 15162346 19 + + 0 0 1 1 150 136 1 0 1 INV cancer_singleSample OV_3_T 580 786 0 584 202 790 4 4 15 12 0,228571 simple NA 8 126128906 126129085 8 126256388 126256556 15162575 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 419 495 66 422 73 669 3 14 7 11 0,608696 simple NA 8 126472139 126472341 8 127542549 127542767 15165527 10 - - 0 0 1 1 145 138 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_3_T;chainID=5 8 127541083 127541233 8 127555395 127555595 15177897 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 11 235 233 786 222 799 2 4 20 20 0,166667 simple NA 8 127665013 127665120 8 128903248 128903383 15179053 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 127958896 127959151 8 128079767 128080028 15182072 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 128006399 128006659 8 128253147 128253355 15182458 17 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 128148132 128148246 8 128813996 128814145 15184596 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise BRCA_4_T;chainID=3 8 128199139 128199345 8 128264131 128264274 15185272 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise BRCA_4_T;chainID=3 8 128226949 128227195 8 128298161 128298389 15185558 19 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 0 205 205 600 205 605 0 25 40 44 0,373134 mild_stepwise BRCA_4_T;chainID=3 8 128239750 128239926 8 128240687 128240915 15185707 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 9 304 319 533 215 559 -15 0 20 28 0 simple NA 8 128318507 128318717 8 128575425 128575680 15186647 11 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 128408853 128409011 8 128410940 128411103 15187808 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 459 630 100 461 169 976 2 2 15 15 0,117647 simple NA 8 128597641 128597806 8 128989543 128989701 15189880 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 128931153 128931438 8 130207791 130208051 15192833 11 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_5_T 430 756 4 428 327 757 -2 3 25 34 0,0923077 simple NA 8 130544594 130544838 8 130548349 130548633 15210948 20 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 607 603 692 85 700 4 NA NA NA NA simple NA 8 130546050 130546272 8 130548896 130549118 15210968 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 33 276 274 684 241 705 2 7 23 25 0,225806 simple NA 8 131386315 131386583 8 131469653 131469910 15217954 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 131516503 131516761 8 133525809 133526102 15218822 14 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 131769967 131770223 8 131779114 131779414 15221537 21 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 133532418 133532647 8 133537830 133538037 15241157 17 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 118 659 7 118 111 659 0 16 16 26 0,432432 simple NA 8 134574227 134574445 8 134580087 134580182 15249061 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 331 669 11 333 320 669 2 0 25 12 0 simple NA 8 135470545 135470769 8 135475066 135475351 15258600 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 135578636 135578794 8 135637854 135638010 15259203 5 + - 0 2 1 1 150 150 1 0 1 DEL cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 135962087 135962286 8 135966765 135966972 15261929 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 493 598 30 493 105 598 0 4 43 37 0,0909091 simple NA 8 136348453 136348581 8 137457335 137457521 15266737 5 + + 0 1 1 1 69 150 1 0 1 INTRA cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 137065803 137065979 8 137067964 137068150 15272679 3 - + 0 1 1 1 150 120 1 0 1 DUP cancer_singleSample BRCA_1_T 7 211 215 312 98 312 -4 NA NA NA NA simple NA 8 137266984 137267215 8 137272949 137273239 15274818 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 70 195 193 487 123 490 2 16 38 20 0,355556 simple NA 8 138616150 138616381 8 138618302 138618571 15289907 23 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 611 607 731 120 754 4 20 8 9 0,701754 simple NA 8 138896159 138896370 8 138900025 138900231 15293009 8 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 139054705 139054844 8 139091219 139091347 15295109 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_4_T 646 929 0 648 281 930 2 0 46 28 0 simple NA 8 139060042 139060228 8 139091395 139091578 15295121 3 - - 1 0 1 1 116 150 1 0 1 INV cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 139145309 139145505 8 139148360 139148518 15295627 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 227 449 49 223 175 504 -4 8 26 31 0,219178 simple NA 8 140780689 140780887 8 141169244 141169388 15309985 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_10_T 576 981 61 567 406 984 -9 4 13 3 0,333333 simple NA 8 141117691 141117976 8 141126682 141126878 15310979 9 - + 1 0 1 1 150 134 1 0 1 DUP cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 141476387 141476546 8 141485134 141485324 15312426 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 15 379 372 864 357 939 7 4 29 38 0,106667 mild_stepwise LUSC_11_T;chainID=6 8 141483380 141483616 8 141485020 141485234 15312455 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_11_T;chainID=6 8 141764945 141765193 8 141977966 141978188 15313843 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 408 559 293 409 115 618 1 9 15 15 0,375 simple NA 8 141895075 141895318 8 141900594 141900825 15315021 12 - + 0 0 1 1 150 144 1 0 1 DUP cancer_singleSample OV_10_T 21 99 97 388 76 388 2 2 10 23 0,108108 simple NA 8 145889369 145889588 8 146159058 146159242 15324613 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 8 146094191 146094449 8 146095449 146095658 15325088 10 + - 0 0 1 1 129 52 1 0 1 DEL cancer_singleSample OV_6_T 585 964 0 587 377 967 2 6 16 18 0,26087 simple NA 8 146297665 146297787 8 146303103 146303235 15326632 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_13_T 0 670 668 1280 610 1280 2 10 16 0 0,555556 simple NA 9 4164108 4164205 9 132450799 132450936 16656062 4 - - 1 6 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_5_T;chainID=7 9 4233367 4233605 9 4403370 4403654 16670017 10 - + 0 1 1 1 150 146 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_5_T;chainID=7 9 4440828 4441059 9 132449350 132449582 16712810 8 + + 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_5_T 610 701 0 611 90 803 1 15 18 12 0,5 mild_stepwise OV_5_T;chainID=7 9 4845310 4845552 9 18169652 18169888 16743409 16 - + 0 0 1 1 150 68 1 0 1 INTRA cancer_singleSample BRCA_2_T 600 1242 0 602 600 1242 2 5 21 12 0,232558 simple NA 9 5337863 5338022 9 5346317 5346488 16747408 3 - + 0 1 1 1 89 150 1 0 1 DUP cancer_singleSample OV_10_T 0 583 582 721 138 753 1 4 1 10 0,421053 simple NA 9 5524755 5524964 9 5589040 5589228 16748565 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_1_T 517 676 33 505 160 680 -12 10 22 12 0,37037 simple NA 9 5539401 5539655 9 5591311 5591571 16748729 15 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 59 589 595 994 400 1037 -6 16 30 25 0,367816 mild_stepwise LUSC_13_T;chainID=12 9 5547257 5547535 9 5591315 5591616 16748767 19 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 1 602 606 837 232 855 -4 17 40 19 0,365591 mild_stepwise LUSC_13_T;chainID=12 9 5578155 5578380 9 5594193 5594442 16749091 6 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_13_T;chainID=12 9 5578848 5579053 9 5590676 5590837 16749096 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_13_T;chainID=12 9 6265343 6265492 9 6267688 6267838 16754844 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 0 660 663 1034 372 1062 -3 7 19 0 0,424242 simple NA 9 6325327 6325540 9 6328716 6328879 16755391 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 570 568 740 170 760 2 7 26 14 0,259259 simple NA 9 6963328 6963503 9 6966420 6966559 16841131 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 4 329 328 430 101 474 1 5 14 12 0,277778 simple NA 9 8988102 8988364 9 8991109 8991342 17004173 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 611 606 800 189 811 5 14 8 7 0,651163 simple NA 9 9039856 9039952 9 12885172 12885333 17007080 5 - - 0 0 1 1 150 144 1 0 1 INTRA cancer_singleSample GBM_8_T 0 615 615 1006 391 1012 0 4 5 5 0,444444 simple NA 9 9283115 9283392 9 9285461 9285766 17019684 31 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 597 987 1 597 390 1000 0 9 5 7 0,6 simple NA 9 10031779 10031971 9 10089545 10089676 16190961 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 13 426 419 1028 406 1028 7 5 15 11 0,277778 simple NA 9 11902499 11902760 9 11912283 11912558 16327965 9 - + 0 2 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 602 891 0 605 286 891 3 11 8 8 0,578947 simple NA 9 11905116 11905317 9 11908608 11908736 16328151 6 + - 0 0 1 1 150 122 1 0 1 DEL cancer_singleSample OV_4_T 151 546 544 1051 393 1062 2 6 26 16 0,222222 simple NA 9 12916907 12917142 9 12919387 12919654 16397664 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 611 610 948 337 1190 1 5 19 14 0,232558 simple NA 9 13355263 13355378 9 13683522 13683811 16412539 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 139 625 19 139 120 681 0 10 33 34 0,229885 mild_stepwise BRCA_4_T;chainID=9 9 13495269 13495497 9 13499817 13499999 16417830 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 1 105 105 440 104 450 0 9 21 37 0,236842 mild_stepwise BRCA_4_T;chainID=9 9 13589351 13589512 9 13724263 13724543 16421677 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 498 878 0 501 377 878 3 9 45 40 0,174757 mild_stepwise BRCA_4_T;chainID=9 9 13714599 13714793 9 13816819 13817056 16424421 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise BRCA_4_T;chainID=9 9 13834377 13834655 9 13974087 13974364 16427322 23 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T 608 681 1 611 70 685 3 NA NA NA NA simple NA 9 14514337 14514443 9 36588973 36589191 16436331 3 - - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_6_T 569 712 32 539 144 723 -30 5 0 13 0,434783 simple NA 9 15182554 15182770 9 15200127 15200343 16441403 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 15270233 15270478 9 15282983 15283248 16441901 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 629 627 848 219 868 2 11 12 28 0,354839 simple NA 9 15686749 15686953 9 15712384 15712596 16444630 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_7_T 530 799 16 533 266 803 3 5 17 5 0,3125 simple NA 9 16068365 16068592 9 16089290 16089499 16448280 13 + - 0 0 1 1 140 53 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 16089312 16089455 9 16093000 16093188 16448527 3 + - 0 0 1 1 61 150 1 0 1 DEL cancer_singleSample BRCA_6_T 6 394 393 695 301 707 1 13 6 12 0,590909 simple NA 9 17152768 17153010 9 19626320 19626541 16455613 7 + + 0 0 1 1 140 150 1 0 1 INTRA cancer_singleSample LUAD_6_T 0 649 651 1260 610 1261 -2 9 24 16 0,310345 simple NA 9 17842948 17843096 9 35021021 35021175 16461382 5 + - 0 0 1 1 150 58 1 0 1 INTRA cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_16_T;chainID=1 9 17843928 17844074 9 35020492 35020632 16461387 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 17 415 400 716 301 723 15 0 0 7 0 extreme_oneoff GBM_16_T;chainID=1 9 17845353 17845518 9 17846499 17846669 16461393 5 + - 1 0 1 1 150 131 1 0 1 DEL cancer_singleSample GBM_16_T 21 417 417 1048 396 1048 0 3 13 2 0,285714 extreme_oneoff GBM_16_T;chainID=1 9 17880073 17880231 9 17885247 17885443 16461820 5 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_11_T 0 620 615 1251 615 1251 5 1 2 14 0,111111 simple NA 9 17957299 17957476 9 18358028 18358205 16462476 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_16_T 636 1098 0 636 462 1116 0 8 14 12 0,380952 simple NA 9 18059067 18059186 9 34976509 34976704 16463511 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 0 619 618 1227 608 1227 1 7 17 3 0,411765 extreme_oneoff GBM_16_T;chainID=1 9 18136594 18136743 9 18211577 18211797 16464312 7 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_16_T 452 1061 52 451 400 1061 -1 13 8 22 0,464286 extreme_oneoff GBM_16_T;chainID=1 9 18137948 18138178 9 34991930 34992108 16464329 9 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 70 112 111 401 41 440 1 1 17 17 0,0555556 extreme_oneoff GBM_16_T;chainID=1 9 18138144 18138259 9 34964798 34964927 16464330 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 651 1281 0 652 629 1281 1 6 14 11 0,324324 extreme_oneoff GBM_16_T;chainID=1 9 18138549 18138724 9 34976736 34976930 16464344 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 596 1216 0 599 596 1216 3 7 12 3 0,482759 extreme_oneoff GBM_16_T;chainID=1 9 18138585 18138696 9 36219149 36219270 16464341 3 + + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 672 1297 0 672 625 1297 0 9 7 15 0,45 extreme_oneoff GBM_16_T;chainID=1 9 18188308 18188456 9 34983577 34983737 16464877 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 638 1246 0 639 607 1246 1 12 16 9 0,489796 extreme_oneoff GBM_16_T;chainID=1 9 18358406 18358592 9 27213453 27213608 16466291 8 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_10_T 589 1169 6 589 580 1169 0 6 6 5 0,521739 simple NA 9 19508156 19508329 9 26347849 26348021 16474936 9 + - 0 0 1 1 150 69 1 0 1 INTRA cancer_singleSample GBM_7_T 596 1187 0 595 592 1187 -1 2 1 0 0,8 simple NA 9 19625705 19625846 9 22185096 22185275 16475942 5 + - 0 0 1 1 82 150 1 0 1 INTRA cancer_singleSample GBM_5_T 643 1325 7 646 636 1325 3 8 2 2 0,8 simple NA 9 19636389 19636498 9 19646061 19646201 16476027 3 - + 4 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 19677892 19678125 9 24073534 24073767 16476548 9 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 19682242 19682411 9 19760669 19760787 16476626 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_4_T 177 832 44 177 133 832 0 16 16 15 0,507937 simple NA 9 19773151 19773427 9 19782641 19782888 16477498 23 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 540 661 4 543 118 686 3 18 11 22 0,521739 simple NA 9 20599715 20599924 9 36090056 36090223 16484262 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_6_T 372 668 24 363 297 687 -9 3 13 5 0,25 simple NA 9 20863480 20863691 9 21972267 21972490 16486045 13 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_4_T 3 670 668 1277 607 1277 2 21 4 2 0,875 simple NA 9 21088416 21088584 9 24114169 24114366 16488127 11 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_14_T 523 907 51 523 384 918 0 18 10 9 0,654545 simple NA 9 21092216 21092390 9 21093169 21093317 16488147 6 + - 2 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_4_T 44 383 383 1013 339 1013 0 6 4 6 0,545455 mild_oneoff GBM_4_T;chainID=1 9 21093713 21093891 9 21720040 21720251 16488152 5 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_4_T 0 614 611 1223 609 1223 3 14 3 5 0,777778 mild_oneoff GBM_4_T;chainID=1 9 21130169 21130357 9 24494259 24494429 16488689 4 + - 0 0 1 1 111 150 1 0 1 INTRA cancer_singleSample GBM_10_T 581 1230 0 584 581 1230 3 4 2 2 0,666667 simple NA 9 21275793 21275978 9 21644900 21645126 16490546 3 + + 1 1 1 1 150 150 1 0 1 INV cancer_singleSample GBM_9_T 670 1201 0 670 531 1201 0 5 13 0 0,434783 extreme_oneoff GBM_9_T;chainID=2 9 21292849 21293090 9 21494754 21495052 16490796 10 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_9_T 0 609 607 1053 444 1071 2 3 6 0 0,5 extreme_oneoff GBM_9_T;chainID=2 9 21334862 21335058 9 29327733 29327924 16491190 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_12_T 4 632 631 1240 608 1240 1 3 4 11 0,285714 simple NA 9 21393744 21393945 9 22057421 22057582 16491731 6 + - 2 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_9_T 405 980 3 405 402 1025 0 6 10 1 0,521739 extreme_oneoff GBM_9_T;chainID=2 9 21485781 21486028 9 24314378 24314587 16492662 11 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T 0 623 623 1011 388 1033 0 11 1 9 0,6875 extreme_oneoff GBM_9_T;chainID=2 9 21675676 21675854 9 21885078 21885237 16493975 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_16_T 0 610 606 1216 606 1216 4 14 22 6 0,5 simple NA 9 21685912 21686140 9 27286773 27286957 16494030 9 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_12_T 0 621 620 1226 605 1226 1 6 2 4 0,666667 simple NA 9 21691885 21692022 9 27155594 27155692 16494068 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 0 492 492 821 329 824 0 1 2 5 0,222222 simple NA 9 21722000 21722211 9 22007928 22008095 16494286 7 + - 0 1 1 1 123 150 1 0 1 DEL cancer_singleSample GBM_4_T 605 1003 0 607 396 1006 2 6 5 5 0,545455 mild_oneoff GBM_4_T;chainID=1 9 21805693 21805929 9 21845666 21845901 16495022 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 644 1138 0 643 495 1167 -1 9 8 10 0,5 mild_stepwise LUSC_11_T;chainID=12 9 21846523 21846742 9 24314418 24314624 16495269 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 609 610 1093 484 1122 -1 4 9 9 0,307692 mild_stepwise LUSC_11_T;chainID=12 9 21847909 21848091 9 29245962 29246100 16495283 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 608 839 0 611 228 862 3 4 15 9 0,25 mild_stepwise LUSC_11_T;chainID=12 9 21909748 21910123 9 32065057 32065422 16496045 30 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 21935174 21935410 9 22324336 22324608 16496202 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_2_T 167 783 19 159 141 783 -8 6 1 7 0,6 simple NA 9 21974480 21974842 9 21981193 21981411 16496362 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 13 288 287 896 274 896 1 4 0 0 1 simple NA 9 22018752 22018886 9 22058399 22058563 16496510 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_16_T 596 1122 0 597 525 1179 1 13 12 10 0,541667 mild_oneoff GBM_16_T;chainID=4 9 22057663 22057796 9 22685383 22685554 16496814 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_16_T 0 656 653 1273 617 1273 3 4 2 5 0,533333 mild_oneoff GBM_16_T;chainID=4 9 22066997 22067177 9 22640069 22640256 16496901 8 - - 0 0 1 1 137 150 1 0 1 INV cancer_singleSample GBM_16_T 359 968 11 360 348 968 1 15 28 13 0,422535 mild_oneoff GBM_16_T;chainID=4 9 22230593 22230829 9 26105667 26105879 16498153 7 - + 4 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T 24 392 391 827 367 854 1 5 8 6 0,416667 extreme_oneoff GBM_9_T;chainID=2 9 22460985 22461161 9 23423524 23423701 16499792 4 + - 4 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_9_T 0 599 598 779 180 797 1 1 5 8 0,133333 extreme_oneoff GBM_9_T;chainID=2 9 22462340 22462588 9 26954266 26954522 16499803 10 - + 2 0 1 1 148 150 1 0 1 INTRA cancer_singleSample GBM_9_T 0 598 598 896 298 921 0 4 6 15 0,275862 extreme_oneoff GBM_9_T;chainID=2 9 22482248 22482477 9 32822326 32822618 16500006 8 - + 0 0 1 1 115 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 610 608 816 206 847 2 6 11 38 0,196721 mild_stepwise LUSC_11_T;chainID=12 9 22516924 22517199 9 23383739 23384043 16500290 9 + + 2 1 1 1 143 150 1 0 1 INV cancer_singleSample GBM_9_T 0 595 595 971 376 1002 0 7 7 5 0,538462 extreme_oneoff GBM_9_T;chainID=2 9 22611758 22611912 9 27301103 27301397 16501263 7 + + 3 1 1 1 143 150 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=2 9 23044069 23044310 9 23048140 23048376 16505858 10 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 23227129 23227359 9 27155320 27155470 16507636 5 - + 0 0 1 1 150 140 1 0 1 INTRA cancer_singleSample GBM_8_T 0 569 568 1159 568 1159 1 2 4 9 0,235294 simple NA 9 23572510 23572693 9 27411818 27412026 16510357 4 + + 3 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=2 9 23572685 23572972 9 25550536 25550790 16510358 7 - + 2 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=2 9 23658644 23658896 9 26118209 26118481 16511208 10 + + 1 2 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T 0 607 606 644 37 709 1 1 7 6 0,133333 extreme_oneoff GBM_9_T;chainID=2 9 24232873 24233163 9 24656454 24656648 16516112 14 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_9_T 597 824 0 597 227 825 0 8 13 9 0,421053 extreme_oneoff GBM_9_T;chainID=2 9 24584121 24584290 9 24590638 24590843 16519872 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_10_T 478 729 0 478 251 729 0 5 4 2 0,625 simple NA 9 25219776 25220035 9 25309433 25309740 16525380 198 + + 0 0 1 1 150 120 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 25471276 25471476 9 26057747 26057967 16527548 4 + + 3 1 1 1 150 150 1 0 1 INV cancer_singleSample GBM_9_T 0 594 594 778 184 812 0 9 18 1 0,486486 extreme_oneoff GBM_9_T;chainID=2 9 25549461 25549754 9 26735608 26735925 16528333 6 - + 1 5 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T 590 1202 0 591 590 1202 1 0 4 6 0 extreme_oneoff GBM_9_T;chainID=2 9 25983638 25983905 9 26119534 26119803 16531993 11 - - 2 2 1 1 133 79 1 0 1 INV cancer_singleSample GBM_9_T 0 541 541 918 377 949 0 4 12 13 0,242424 extreme_oneoff GBM_9_T;chainID=2 9 26017659 26018028 9 26520502 26520858 16532384 24 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_6_T 577 1156 0 577 577 1156 0 5 3 3 0,625 simple NA 9 26058018 26058296 9 26546235 26546544 16532940 21 - + 0 1 1 1 148 150 1 0 1 DUP cancer_singleSample GBM_9_T 589 918 4 589 329 918 0 4 2 6 0,5 extreme_oneoff GBM_9_T;chainID=2 9 26106062 26106316 9 27348591 27348870 16533501 11 - - 1 2 1 1 147 150 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=2 9 26549731 26550006 9 26742169 26742450 16536958 18 - - 2 1 1 1 147 150 1 0 1 INV cancer_singleSample GBM_9_T 600 955 0 602 353 1000 2 7 12 10 0,388889 extreme_oneoff GBM_9_T;chainID=2 9 26703859 26704147 9 36079404 36079690 16538106 28 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=13 9 26704088 26704315 9 27413097 27413379 16538119 19 + - 1 2 1 1 150 146 1 0 1 DEL cancer_singleSample GBM_9_T 453 1013 27 453 426 1013 0 12 16 11 0,470588 extreme_oneoff GBM_9_T;chainID=2 9 26705270 26705446 9 26959147 26959316 16538130 5 - - 2 4 1 1 150 102 1 0 1 INV cancer_singleSample GBM_9_T 613 897 0 617 280 939 4 12 16 7 0,510638 extreme_oneoff GBM_9_T;chainID=2 9 26870054 26870233 9 28012750 28013048 16539661 6 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=13 9 26941934 26942248 9 35528605 35528904 16540048 40 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=13 9 27014215 27014497 9 27016757 27016999 16540370 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=13 9 27121780 27121988 9 27661229 27661464 16541115 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=13 9 27252258 27252523 9 27863881 27864143 16542053 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=13 9 27260277 27260510 9 28016313 28016586 16542134 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=13 9 27659764 27660000 9 27666041 27666326 16544806 17 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=13 9 27664789 27664990 9 27684246 27684448 16544868 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=13 9 27671475 27671761 9 27999912 28000184 16544943 16 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=13 9 27712084 27712304 9 28030818 28031036 16545237 7 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=13 9 27878476 27878756 9 27892200 27892453 16547074 16 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=13 9 27886508 27886718 9 28014732 28014967 16547144 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=13 9 27950806 27951083 9 28015675 28015991 16547865 19 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=13 9 27993177 27993447 9 28006033 28006270 16548313 6 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=13 9 28548374 28548646 9 28569947 28570247 16552571 71 - - 0 0 1 1 147 150 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 28644041 28644162 9 28682889 28683025 16553360 3 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 28898950 28899215 9 28908033 28908235 16555663 4 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 29023795 29023918 9 29029871 29030005 16556687 4 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_4_T 798 946 175 793 149 951 -5 1 13 14 0,0689655 simple NA 9 29205423 29205626 9 29247843 29248001 16558188 6 - - 0 1 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_11_T;chainID=12 9 29371836 29372036 9 121479283 121479427 16559877 6 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 162 823 0 166 162 823 4 2 29 13 0,0869565 simple NA 9 29915722 29915960 9 29917171 29917430 16565575 18 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_10_T 42 358 354 982 312 982 4 10 4 1 0,8 simple NA 9 30340924 30341085 9 30342241 30342386 16569324 3 - + 0 0 1 1 150 147 1 0 1 DUP cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 30863858 30864059 9 34631116 34631361 16573556 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 31630300 31630472 9 31654529 31654678 16581065 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 8 500 499 1103 491 1103 1 6 14 3 0,413793 simple NA 9 31660883 31661031 9 31662015 31662216 16581345 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 611 947 0 612 335 961 1 11 10 18 0,44 simple NA 9 32414274 32414645 9 32423764 32424136 16588253 36 + - 0 0 1 1 149 138 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 32581769 32582131 9 32584974 32585366 16589373 42 + - 1 1 1 1 148 148 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 32816800 32817025 9 33021155 33021386 16590901 9 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T 350 546 0 352 194 587 2 3 31 14 0,117647 mild_stepwise LUSC_11_T;chainID=12 9 32913600 32913846 9 33239501 33239746 16591786 16 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 618 918 42 614 301 921 -4 11 27 16 0,338462 simple NA 9 33004109 33004334 9 33009207 33009462 16592345 14 - + 1 1 1 1 144 150 1 0 1 DUP cancer_singleSample OV_4_T 0 584 583 743 159 743 1 5 15 22 0,212766 simple NA 9 33030535 33030811 9 121618130 121618401 16592440 8 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 615 860 0 617 243 881 2 0 28 2 0 mild_stepwise LUSC_11_T;chainID=12 9 33312553 33312748 9 33662989 33663194 16594065 5 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 230 532 71 232 159 543 2 7 25 41 0,175 simple NA 9 33356561 33356785 9 35409720 35409960 16594506 8 + + 0 0 1 1 150 140 1 0 1 INTRA cancer_singleSample LUAD_1_T 104 471 2 115 102 505 11 0 8 14 0 simple NA 9 33582701 33582888 9 33976155 33976352 16598446 7 - + 0 0 1 1 36 150 1 0 1 DUP cancer_singleSample LUSC_11_T 31 651 651 747 96 768 0 7 56 41 0,126126 simple NA 9 33916299 33916559 9 35431886 35432142 16600819 9 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 0 612 612 931 319 931 0 4 7 22 0,216216 simple NA 9 34746360 34746604 9 34752802 34752936 16605169 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 9 244 242 851 233 851 2 5 5 16 0,322581 simple NA 9 35052858 35053039 9 36131710 36131937 16607145 14 + + 0 0 1 1 150 131 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 465 464 680 215 687 1 22 26 18 0,5 extreme_stepwise LUSC_11_T;chainID=13 9 35083229 35083349 9 35118770 35118911 16607247 3 + - 0 1 1 1 150 77 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 35571990 35572258 9 36085974 36086280 16610511 36 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T 487 808 41 488 320 812 1 26 19 17 0,590909 extreme_stepwise LUSC_11_T;chainID=13 9 36570342 36570517 9 36667723 36667949 16616201 4 + - 0 0 1 1 150 103 1 0 1 DEL cancer_singleSample LUSC_10_T 0 612 612 686 74 687 0 NA NA NA NA simple NA 9 36841916 36842164 9 36842846 36843058 16617561 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 347 906 0 350 347 906 3 5 1 5 0,625 simple NA 9 37384296 37384474 9 38010834 38011037 16620543 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 675 674 1039 364 1048 1 9 13 8 0,461538 simple NA 9 37821952 37822203 9 37868123 37868346 16622972 9 + - 0 0 1 1 67 150 1 0 1 DEL cancer_singleSample OV_3_T 573 716 0 576 140 716 3 2 60 18 0,0487805 simple NA 9 38085269 38085383 9 100210432 100210602 16624025 5 - + 0 0 1 1 150 140 1 0 1 INTRA cancer_singleSample GBM_7_T 590 741 0 591 150 774 1 5 2 8 0,5 simple NA 9 41702426 41702558 X 120219102 120219232 2657819 3 - - 0 0 1 1 59 150 1 0 1 INTER cancer_singleSample BRCA_8_T 112 583 7 107 101 674 -5 2 8 13 0,16 simple NA 9 66456545 66456783 9 66519874 66520101 16760280 5 - + 0 0 1 1 150 95 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 71093252 71093355 9 71113912 71114004 16859812 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_7_T 119 345 342 650 223 675 3 2 15 10 0,137931 simple NA 9 71834030 71834216 9 71837287 71837508 16864783 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 72792227 72792335 9 72847583 72847783 16872402 5 + - 0 1 1 1 150 135 1 0 1 DEL cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 74669955 74670121 9 74681801 74682275 16886376 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T 19 473 468 593 120 657 5 0 26 18 0 simple NA 9 74827026 74827239 9 74828608 74828814 16887459 3 + - 1 0 1 1 150 116 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 74983979 74984178 9 75254451 75254682 16888487 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 389 501 25 386 113 521 -3 5 4 24 0,263158 simple NA 9 75422161 75422447 9 75688492 75688789 16891708 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T 35 493 491 669 176 698 2 8 21 20 0,280702 simple NA 9 80850857 80851117 9 80933166 80933416 16935439 16 - + 1 0 1 1 149 149 1 0 1 DUP cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 80924982 80925160 9 81121815 81122017 16935767 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T 501 1131 11 503 490 1141 2 5 17 11 0,263158 simple NA 9 82162193 82162379 9 82168038 82168209 16946333 5 + - 0 0 1 1 72 150 1 0 1 DEL cancer_singleSample LUSC_13_T 7 404 400 864 393 894 4 8 124 24 0,097561 simple NA 9 82984731 82984944 9 121469024 121469258 16952822 8 - + 0 1 1 1 150 135 1 0 1 INTRA cancer_singleSample OV_6_T 468 880 46 472 408 891 4 3 10 7 0,26087 simple NA 9 86167765 86167967 9 86580454 86580661 16978811 9 + - 0 0 1 1 134 87 1 0 1 DEL cancer_singleSample OV_3_T 0 550 552 923 372 948 -2 5 10 20 0,25 simple NA 9 86319079 86319352 9 86367421 86367725 16979856 30 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 610 606 886 276 897 4 9 5 26 0,367347 simple NA 9 86572058 86572170 9 86891319 86891442 16981502 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 115 732 32 116 83 732 1 11 14 21 0,385965 simple NA 9 86575827 86576106 9 86761756 86762020 16981526 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 0 607 602 713 106 713 5 7 21 1 0,388889 simple NA 9 87354101 87354356 9 87360365 87360648 16986407 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 609 605 748 139 780 4 2 18 14 0,111111 simple NA 9 89675162 89675327 9 89683012 89683278 17002433 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 209 329 22 207 121 343 -2 4 6 6 0,4 simple NA 9 89854550 89854774 9 89861798 89862056 17003935 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 490 645 145 493 152 649 3 9 21 20 0,305085 simple NA 9 91025766 91025944 9 91058974 91059164 17010758 6 + - 0 0 1 1 149 150 1 0 1 DEL cancer_singleSample BRCA_3_T 8 239 237 716 229 739 2 5 21 22 0,188679 simple NA 9 92070158 92070344 9 93412215 93412444 17016845 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 631 709 0 633 76 710 2 NA NA NA NA simple NA 9 94623855 94624119 9 94636034 94636317 17031765 19 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 0 386 382 714 328 721 4 14 27 19 0,378378 simple NA 9 94974763 94975043 9 94983261 94983512 17033274 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 611 986 0 613 373 989 2 6 20 21 0,226415 simple NA 9 96607770 96607967 9 96608431 96608625 17040366 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 285 454 2 288 166 460 3 9 18 24 0,3 simple NA 9 97213775 97213975 9 97283157 97283328 17044461 4 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 580 619 136 582 37 621 2 NA NA NA NA simple NA 9 97273399 97273604 9 97276892 97277035 17044906 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 614 808 0 605 195 810 -9 16 20 16 0,470588 simple NA 9 99016448 99016583 9 99024629 99024848 17053071 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 43 424 422 838 379 838 2 7 21 24 0,237288 simple NA 9 101041931 101042122 9 101045177 101045359 16194876 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_8_T 0 191 190 490 190 490 1 9 18 13 0,367347 simple NA 9 101300949 101301239 9 125598240 125598460 16196287 16 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T 0 604 601 902 298 910 3 14 11 16 0,509091 simple NA 9 101332600 101332901 9 101341450 101341736 16196453 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 350 346 576 226 591 4 14 15 12 0,509091 simple NA 9 101766098 101766310 9 101772749 101772956 16198734 5 - + 0 0 1 1 150 138 1 0 1 DUP cancer_singleSample BRCA_9_T 188 695 10 188 178 695 0 5 18 22 0,2 simple NA 9 103189162 103189266 9 103191196 103191324 16208282 3 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 620 690 0 623 67 697 3 NA NA NA NA simple NA 9 104292009 104292253 9 104528068 104528331 16217370 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 22 296 294 671 272 702 2 4 13 15 0,222222 simple NA 9 105718200 105718340 9 105723907 105724160 16230242 5 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 175 794 13 175 162 794 0 4 17 19 0,181818 simple NA 9 107428915 107429132 9 107432703 107432946 16243925 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 596 592 691 95 917 4 7 27 21 0,225806 simple NA 9 107657256 107657543 9 107797517 107797811 16245006 7 + - 4 2 1 1 142 150 1 0 1 DEL cancer_singleSample OV_1_T 598 737 0 601 136 775 3 4 15 4 0,296296 simple NA 9 107735277 107735518 9 108333149 108333397 16245368 4 - + 2 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 386 771 31 388 355 781 2 6 19 12 0,27907 simple NA 9 107800604 107800845 9 107816972 107817185 16245804 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_1_T 69 338 337 706 268 767 1 1 15 9 0,0769231 simple NA 9 108442693 108442921 9 109393983 109394178 16249944 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 7 190 189 756 182 1175 1 4 12 10 0,266667 simple NA 9 111476545 111476821 9 123901916 123902155 16273607 10 + - 0 0 1 1 87 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 620 941 0 622 319 945 2 3 18 16 0,15 simple NA 9 111978174 111978375 9 111981098 111981274 16276744 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 14 502 524 993 470 994 -22 7 5 10 0,482759 simple NA 9 112029910 112030045 9 112180274 112180439 16277064 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 20 269 267 756 247 756 2 10 23 8 0,392157 simple NA 9 114088675 114088826 9 114155017 114155189 16292705 5 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample COAD_3_T 629 1239 0 631 608 1239 2 2 22 12 0,105263 simple NA 9 114851288 114851495 9 114852471 114852630 16297999 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 282 444 22 283 161 678 1 11 12 23 0,385965 simple NA 9 114884982 114885220 9 116337170 116337402 16298300 8 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 116558647 116558878 9 117107632 117107840 16308804 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 116747926 116748122 9 116763891 116764143 16309900 3 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 138 250 2 140 110 252 2 8 15 15 0,347826 simple NA 9 116858330 116858611 9 116860376 116860481 16310288 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 633 788 0 634 154 788 1 1 14 1 0,117647 simple NA 9 117619774 117619919 9 117631650 117631798 16314053 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 241 325 0 243 82 344 2 7 16 18 0,291667 simple NA 9 119790969 119791167 9 119807924 119808124 16334052 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 31 518 516 1140 485 1142 2 5 4 11 0,4 simple NA 9 120293660 120293853 9 120300884 120301065 16338652 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 2 529 526 1059 524 1064 3 0 0 17 0 simple NA 9 121150636 121150894 9 121345598 121345859 16346954 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 27 442 441 740 298 765 1 8 25 29 0,228571 simple NA 9 121324737 121324895 9 121331974 121332177 16348673 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 438 566 98 441 125 626 3 5 16 11 0,27027 simple NA 9 122896295 122896513 9 122907685 122907898 16362258 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 1 191 188 826 187 826 3 7 19 31 0,21875 simple NA 9 122966191 122966415 9 123232663 123232826 16362872 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T 445 573 0 443 129 615 -2 10 19 19 0,344828 simple NA 9 122975477 122975748 9 122983560 122983793 16362956 13 - + 0 0 1 1 135 150 1 0 1 DUP cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 123518970 123519208 9 123534892 123535134 16366520 18 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 50 185 181 609 131 648 4 18 26 24 0,418605 simple NA 9 124594156 124594255 9 132910127 132910200 16372070 3 - + 1 0 1 1 150 109 1 0 1 INTRA cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 125785440 125785661 9 125810556 125810698 16379285 6 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_5_T 0 180 179 592 179 627 1 12 8 19 0,470588 simple NA 9 126049404 126049580 9 126061667 126061833 16380962 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 126083296 126083504 9 126138764 126138975 16381134 17 - + 0 1 1 1 136 139 1 0 1 DUP cancer_singleSample OV_3_T 414 657 39 415 242 690 1 7 12 12 0,368421 simple NA 9 127221315 127221496 9 127231677 127231876 16387089 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_3_T 0 494 493 652 158 656 1 9 17 17 0,346154 simple NA 9 127319376 127319536 9 127341861 127342062 16387540 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 299 638 0 295 296 638 -4 3 20 10 0,166667 simple NA 9 127933490 127933636 9 127941723 127941948 16390753 4 - + 0 0 1 1 150 142 1 0 1 DUP cancer_singleSample BRCA_12_T 693 990 9 696 294 1051 3 0 15 6 0 simple NA 9 129888457 129888626 9 130527153 130527300 16400789 3 - + 0 0 1 1 150 118 1 0 1 DUP cancer_singleSample LUAD_5_T 0 684 692 818 127 851 -8 1 16 6 0,0833333 simple NA 9 130086833 130086936 9 130089148 130089290 16401817 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 781 777 916 135 929 4 1 20 20 0,047619 simple NA 9 130770007 130770108 9 130816847 130817034 16404011 3 - + 0 0 1 1 138 112 1 0 1 DUP cancer_singleSample OV_7_T 0 584 578 728 144 728 6 5 22 70 0,0980392 simple NA 9 130911164 130911361 9 130920566 130920820 16404446 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 9 131103624 131103766 9 131398741 131398859 16404895 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 0 604 604 893 289 893 0 1 12 4 0,111111 simple NA 9 131149449 131149570 9 131485537 131485639 16404959 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 687 764 0 688 76 795 1 0 13 5 0 simple NA 9 132235089 132235328 9 132451412 132451747 16408714 20 - + 2 0 1 1 144 150 1 0 1 DUP cancer_singleSample OV_5_T 0 571 570 682 111 719 1 7 14 13 0,341463 mild_stepwise OV_5_T;chainID=7 9 132550882 132550993 9 132554202 132554305 16409453 3 - + 0 0 1 1 129 150 1 0 1 DUP cancer_singleSample GBM_17_T 141 832 3 144 138 832 3 3 1 7 0,428571 simple NA 9 132712800 132712993 9 133049410 133049615 16410093 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_6_T 306 665 47 292 246 665 -14 11 21 12 0,4 simple NA 9 134435021 134435243 9 134442542 134442742 16415528 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 519 963 51 519 444 1000 0 10 2 11 0,606061 simple NA 9 135105520 135105694 9 135109191 135109415 16418441 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 623 826 0 629 197 840 6 8 6 4 0,615385 simple NA 9 135473448 135473755 9 135481108 135481324 16419968 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 458 741 40 470 271 766 12 3 15 8 0,206897 simple NA 9 138299807 138299951 9 139410653 139410865 16427094 5 + + 1 4 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T 0 599 599 945 346 994 0 0 13 2 0 simple NA 9 138300549 138300789 9 139412230 139412508 16427097 9 - - 2 2 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T 0 641 640 994 353 1019 1 4 9 1 0,444444 simple NA 9 139452565 139452813 9 139755256 139755526 16429366 13 - + 0 0 1 1 128 150 1 0 1 DUP cancer_singleSample OV_6_T 159 461 21 160 138 521 1 16 13 22 0,477612 simple NA 9 140281747 140281911 9 140452777 140453012 16430894 8 - + 0 0 1 1 142 150 1 0 1 DUP cancer_singleSample OV_3_T 153 628 10 154 143 649 1 2 10 13 0,148148 simple NA 10 1414530 1414702 10 5009958 5010172 20907006 10 - - 1 0 1 1 150 44 1 0 1 INTRA cancer_singleSample LUSC_13_T 21 419 418 478 59 522 1 2 0 61 0,0615385 simple NA 10 2861808 2862031 10 28210982 28211259 21024291 5 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 245 855 12 247 233 855 2 8 16 9 0,390244 simple NA 10 3000372 3000526 10 3006629 3006758 21033806 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 394 601 0 395 206 1039 1 7 15 33 0,225806 simple NA 10 3179625 3179866 10 3183996 3184262 21045455 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 0 559 559 746 187 758 0 9 26 27 0,253521 simple NA 10 3571095 3571326 12 112386886 112387081 21847576 7 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 4059184 4059481 10 4070250 4070530 21141450 8 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 29 256 255 862 226 862 1 7 8 14 0,388889 simple NA 10 4067415 4067828 10 4077165 4078439 21141487 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 4587133 4587411 10 7210000 7210214 21423534 9 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 0 614 614 878 264 885 0 4 13 18 0,205128 simple NA 10 4938737 4938908 8 16531517 16531627 18145837 3 - - 0 2 1 1 65 150 1 0 1 INTER cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 5023804 5024087 10 5164584 5164857 21457931 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 605 962 29 605 357 962 0 24 33 39 0,4 mild_stepwise LUAD_5_T;chainID=2 10 5024969 5025077 10 5267612 5267744 21458035 4 - + 0 0 1 1 150 55 1 0 1 DUP cancer_singleSample LUAD_5_T 751 881 0 756 125 885 5 14 41 108 0,158192 mild_stepwise LUAD_5_T;chainID=2 10 5174073 5174187 10 7359603 7359755 21465642 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 0 651 648 753 102 834 3 3 17 13 0,166667 simple NA 10 5353223 5353335 10 5373768 5373931 21479102 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 28 434 430 1094 402 1100 4 11 14 25 0,360656 mild_stepwise LUAD_5_T;chainID=2 10 5372636 5372815 16 57186767 57186967 22704736 5 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 27 432 432 923 405 937 0 7 34 22 0,2 mild_stepwise LUAD_5_T;chainID=2 10 5389009 5389127 10 69590565 69590713 21482169 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 30 346 344 465 119 525 2 5 17 16 0,232558 simple NA 10 6802167 6802409 18 32153815 32154034 22712742 6 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T 559 845 53 560 285 855 1 2 17 7 0,142857 simple NA 10 7437322 7437448 10 7463210 7463381 21631052 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 148 378 378 428 50 1071 0 3 15 11 0,1875 simple NA 10 8421238 8421359 10 8844729 8844937 21697664 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 8875325 8875559 10 8908243 8908467 21733842 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 268 440 29 269 171 679 1 17 9 14 0,596491 simple NA 10 10017894 10018106 10 10030000 10030230 20696962 24 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 432 544 187 431 113 556 -1 25 18 30 0,510204 simple NA 10 10897092 10897335 10 10907546 10907727 20755571 30 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 11426937 11427200 10 11431593 11431873 20798159 7 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 65 668 0 68 65 668 3 20 9 12 0,655738 simple NA 10 11557544 11557668 10 11558918 11559038 20805544 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 8 515 515 566 51 786 0 2 25 28 0,0701754 simple NA 10 11662733 11662904 10 11664715 11664914 20811811 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 12547165 12547396 10 12552780 12553034 20863505 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 534 989 44 536 453 989 2 3 20 10 0,166667 simple NA 10 12632874 12633087 16 31220847 31221067 21881083 3 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 12658638 12658764 19 15227122 15227397 22713309 17 - + 3 2 1 1 134 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 10 13084384 13084649 10 13085315 13085607 20889359 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 14529145 14529266 11 96668595 96668857 21819289 6 + + 2 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_5_T 266 455 40 271 184 541 5 12 16 17 0,421053 simple NA 10 14643107 14643450 10 38448779 38449024 20910598 17 - + 0 0 1 1 150 131 1 0 1 INTRA cancer_singleSample LUAD_3_T 41 454 470 692 223 797 -16 7 12 13 0,358974 simple NA 10 14812496 14812745 10 45576370 45576680 20911972 14 + - 0 0 1 1 147 137 1 0 1 INTRA cancer_singleSample LUAD_3_T 617 930 0 622 308 942 5 5 8 17 0,285714 simple NA 10 15044663 15044937 10 33552594 33552899 20913325 13 + - 0 0 1 1 94 146 1 0 1 INTRA cancer_singleSample LUAD_3_T 347 601 0 347 254 779 0 3 13 10 0,206897 simple NA 10 15047617 15047804 10 47078180 47078429 20913354 4 - - 2 0 1 1 88 149 1 0 1 INTRA cancer_singleSample LUAD_3_T 44 200 198 418 154 461 2 5 12 25 0,212766 simple NA 10 15144230 15144422 5 114958936 114959133 17912741 4 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample READ_2_T 521 774 0 521 253 786 0 8 20 6 0,380952 simple NA 10 15144274 15144386 5 114958753 114958901 17912746 5 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 15218838 15219063 10 15239404 15239577 20914255 6 - + 0 1 1 1 99 150 1 0 1 DUP cancer_singleSample OV_10_T 286 696 1 286 285 696 0 2 12 12 0,142857 simple NA 10 15305306 15305579 10 15315288 15315520 20914774 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 18393256 18393379 10 39003606 39003722 20937338 4 - - 0 1 1 1 137 112 1 0 1 INTRA cancer_singleSample LUAD_3_T 0 699 696 923 224 959 3 4 8 19 0,228571 simple NA 10 18605115 18605335 12 71020382 71020587 21844627 9 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 19647298 19647460 22 29065223 29065341 22720368 3 - - 0 0 1 1 150 107 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_3_T;chainID=4 10 20507547 20507713 10 20511477 20511649 20958998 9 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 21512731 21512954 10 21528318 21528485 20969004 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_9_T 21 397 397 692 295 709 0 2 20 26 0,08 simple NA 10 22110313 22110507 9 109661280 109661469 18152547 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 609 698 0 614 84 698 5 NA NA NA NA simple NA 10 22582247 22582337 2 216131911 216131988 17066130 4 + + 0 1 1 1 150 75 1 0 1 INTER cancer_singleSample OV_3_T 163 458 33 267 130 498 104 14 9 3 0,7 simple NA 10 24608093 24608282 10 24612724 24612862 20992868 3 + - 2 0 1 1 79 150 1 0 1 DEL cancer_singleSample OV_6_T 233 399 50 234 165 428 1 6 7 18 0,324324 simple NA 10 24686052 24686281 8 66706933 66707176 18114143 4 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 169 271 267 595 98 617 4 7 1 20 0,4 mild_oneoff BRCA_1_T;chainID=2 10 24726634 24726847 8 67220526 67220720 18114145 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 360 491 131 361 130 498 1 11 17 6 0,488889 mild_oneoff BRCA_1_T;chainID=2 10 25275508 25275628 10 25276213 25276458 20998021 6 + - 2 1 1 1 120 150 1 0 1 DEL cancer_singleSample OV_10_T 0 316 313 528 212 542 3 7 1 8 0,608696 simple NA 10 25526061 25526208 10 26528940 26529154 20999753 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 609 1218 0 611 607 1218 2 14 12 12 0,538462 extreme_oneoff GBM_16_T;chainID=1 10 25528020 25528183 10 26618476 26618675 20999778 9 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 0 612 609 1232 609 1232 3 7 7 14 0,4 extreme_oneoff GBM_16_T;chainID=1 10 26137042 26137236 10 26668657 26668813 21005001 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_16_T 84 314 47 85 37 329 1 4 10 13 0,258065 extreme_oneoff GBM_16_T;chainID=1 10 26166871 26166966 3 172737909 172738013 17334336 3 + - 0 0 1 1 150 83 1 0 1 INTER cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 26178323 26178482 10 27402415 27402617 21005264 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_16_T;chainID=1 10 26185777 26185974 10 28570226 28570425 21005336 7 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 363 977 54 364 309 977 1 11 20 17 0,372881 extreme_oneoff GBM_16_T;chainID=1 10 26213706 26213864 10 26471874 26472030 21005531 3 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_16_T 0 646 644 864 218 864 2 11 15 11 0,458333 extreme_oneoff GBM_16_T;chainID=1 10 26228994 26229211 10 28361984 28362172 21005567 10 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_16_T;chainID=1 10 26234071 26234257 10 27560151 27560301 21005581 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 610 1190 0 611 579 1190 1 2 15 17 0,111111 extreme_oneoff GBM_16_T;chainID=1 10 26259970 26260141 9 118941023 118941231 18153070 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 619 1234 0 619 615 1234 0 0 15 26 0 simple NA 10 26301663 26301836 10 26394266 26394461 21006272 5 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_16_T 608 1218 0 610 608 1218 2 9 19 14 0,352941 extreme_oneoff GBM_16_T;chainID=1 10 26308880 26309091 10 26337445 26337676 21006347 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T 0 636 654 734 81 734 -18 NA NA NA NA simple NA 10 26352717 26352839 10 27621185 27621318 21006690 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 195 467 466 700 233 717 1 18 16 19 0,507042 extreme_oneoff GBM_16_T;chainID=1 10 26416342 26416518 10 27452277 27452452 21007108 7 - - 0 1 1 1 150 137 1 0 1 INTRA cancer_singleSample GBM_16_T 524 884 0 522 361 885 -2 17 23 20 0,441558 extreme_oneoff GBM_16_T;chainID=1 10 26424478 26424598 10 27624650 27624797 21007149 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 630 1272 0 630 630 1272 0 6 12 20 0,272727 extreme_oneoff GBM_16_T;chainID=1 10 26427858 26428051 10 27702026 27702232 21007199 8 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 0 195 192 815 192 815 3 8 14 7 0,432432 extreme_oneoff GBM_16_T;chainID=1 10 26449719 26449908 10 27708513 27708709 21007357 4 - + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 619 1222 0 620 602 1222 1 8 13 0 0,551724 extreme_oneoff GBM_16_T;chainID=1 10 26465225 26465449 10 26709600 26709809 21007496 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_16_T;chainID=1 10 26499096 26499235 10 26521017 26521169 21007736 5 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_16_T;chainID=1 10 26511026 26511206 9 36217084 36217275 18153079 8 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_16_T 598 766 0 599 167 784 1 12 10 9 0,55814 extreme_oneoff GBM_16_T;chainID=1 10 26586863 26587058 10 28521985 28522208 21008313 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 40 541 541 1130 501 1132 0 6 16 17 0,266667 extreme_oneoff GBM_16_T;chainID=1 10 26616873 26617031 10 28609730 28609901 21008584 4 + - 1 2 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 0 606 606 720 114 737 0 10 5 11 0,555556 extreme_oneoff GBM_16_T;chainID=1 10 26687182 26687388 10 26704259 26704448 21009164 9 + + 0 1 1 1 84 150 1 0 1 INV cancer_singleSample GBM_16_T 613 855 0 608 243 881 -5 2 10 8 0,181818 extreme_oneoff GBM_16_T;chainID=1 10 26862851 26862929 10 26916406 26916498 21010605 3 - + 2 2 1 1 59 81 1 0 1 DUP cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 26882438 26882543 10 26941663 26941856 21010714 3 + - 6 2 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 26945276 26945541 10 27216995 27217266 21011047 8 + + 0 0 1 1 150 145 1 0 1 INV cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 26946521 26946637 10 27216606 27216731 21011060 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 26999643 26999802 10 33030738 33030880 21011393 5 + + 0 0 1 1 36 150 1 0 1 INTRA cancer_singleSample BRCA_7_T 602 1338 0 605 602 1338 3 9 10 15 0,418605 simple NA 10 27187396 27187584 10 28405432 28405568 21012750 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 620 1225 0 621 604 1225 1 13 19 15 0,433333 extreme_oneoff GBM_16_T;chainID=1 10 27267829 27268007 10 27437160 27437354 21013195 3 - + 0 0 1 1 128 116 1 0 1 DUP cancer_singleSample GBM_16_T 487 610 0 490 120 640 3 5 11 16 0,27027 extreme_oneoff GBM_16_T;chainID=1 10 27298876 27299013 10 27392411 27392581 21013432 3 + + 0 2 1 1 150 150 1 0 1 INV cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_16_T;chainID=1 10 27408124 27408287 10 27489165 27489340 21014261 8 - - 0 0 1 1 150 67 1 0 1 INV cancer_singleSample GBM_16_T 619 1053 0 625 428 1062 6 12 16 11 0,470588 extreme_oneoff GBM_16_T;chainID=1 10 27439517 27439692 10 27629862 27630018 21014446 5 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_16_T 0 635 632 1321 632 1331 3 11 16 7 0,488889 extreme_oneoff GBM_16_T;chainID=1 10 27441179 27441352 10 28484957 28485136 21014463 7 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_16_T;chainID=1 10 27455797 27455935 9 34973777 34973892 18153203 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_16_T 602 925 0 611 314 939 9 5 16 8 0,294118 extreme_oneoff GBM_16_T;chainID=1 10 27482129 27482298 10 28349959 28350118 21014838 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_16_T 230 501 84 230 146 542 0 3 8 17 0,193548 extreme_oneoff GBM_16_T;chainID=1 10 27496695 27496896 10 27627865 27628016 21014911 7 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_16_T 0 608 607 969 361 973 1 12 3 9 0,666667 extreme_oneoff GBM_16_T;chainID=1 10 27500688 27500846 10 39059094 39059296 21014950 4 - - 0 0 1 1 150 61 1 0 1 INTRA cancer_singleSample GBM_16_T 68 153 153 757 85 757 0 9 11 11 0,45 extreme_oneoff GBM_16_T;chainID=1 10 27536869 27537046 10 27987884 27988046 21015162 6 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_16_T 0 638 637 1246 608 1247 1 7 18 15 0,297872 extreme_oneoff GBM_16_T;chainID=1 10 27556424 27556652 10 64332508 64332703 21015206 12 + - 0 0 1 1 123 150 1 0 1 INTRA cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_16_T;chainID=1 10 27603835 27603927 10 27624422 27624509 21015627 6 + + 0 0 1 1 150 114 1 0 1 INV cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 27624276 27624420 10 39004814 39004961 21015985 4 + + 0 0 1 1 67 33 1 0 1 INTRA cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_16_T;chainID=1 10 27739476 27739735 10 27745812 27746143 21016867 19 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 4 279 277 779 273 791 2 13 20 24 0,371429 simple NA 10 28002611 28002805 10 28612088 28612303 21019130 5 - + 0 0 1 1 150 125 1 0 1 DUP cancer_singleSample GBM_16_T 0 611 609 702 91 705 2 NA NA NA NA extreme_oneoff GBM_16_T;chainID=1 10 28088077 28088253 10 64327091 64327251 21019747 9 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 628 931 0 629 302 931 1 10 14 22 0,357143 extreme_oneoff GBM_16_T;chainID=1 10 28131311 28131508 10 28675386 28675571 21020208 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_16_T 605 1209 0 607 602 1209 2 19 17 11 0,575758 extreme_oneoff GBM_16_T;chainID=1 10 28216131 28216324 10 28572960 28573137 21020981 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_16_T 0 609 641 1097 457 1097 -32 4 16 18 0,190476 extreme_oneoff GBM_16_T;chainID=1 10 28265499 28265666 10 64381456 64381653 21021486 7 + + 0 0 1 1 110 150 1 0 1 INTRA cancer_singleSample GBM_16_T 0 605 606 1028 423 1035 -1 5 14 18 0,238095 extreme_oneoff GBM_16_T;chainID=1 10 28273457 28273656 10 39001717 39001884 21021546 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 610 781 0 615 166 802 5 9 20 39 0,233766 extreme_oneoff GBM_16_T;chainID=1 10 28482593 28482734 10 64340641 64340816 21023367 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_16_T;chainID=1 10 28514291 28514470 10 64301596 64301789 21023564 9 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 384 994 21 384 363 994 0 6 25 5 0,285714 extreme_oneoff GBM_16_T;chainID=1 10 28797073 28797344 10 28824532 28824781 21025613 12 - + 0 0 1 1 118 150 1 0 1 DUP cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 30048840 30048931 7 64564686 64564896 17988868 11 + - 2 0 1 1 56 49 1 0 1 INTER cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 30331840 30332103 10 30612401 30612537 21036241 5 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUAD_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 31514182 31514486 14 60867289 60867575 21869252 13 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 31515341 31515578 6 80862407 80862681 17945440 12 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T 608 696 0 610 86 699 2 NA NA NA NA simple NA 10 31676587 31676767 10 31679779 31679949 21044419 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 1 623 623 1277 622 1277 0 10 7 10 0,540541 simple NA 10 31727084 31727331 10 31731284 31731538 21044768 9 + - 0 0 1 1 150 145 1 0 1 DEL cancer_singleSample LUSC_3_T 651 827 0 652 175 863 1 9 19 19 0,321429 simple NA 10 32379584 32379773 10 33293668 33293866 21049325 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 0 613 611 1009 396 1045 2 5 22 17 0,204082 simple NA 10 32410036 32410254 10 32431271 32431490 21049491 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 608 660 5 606 53 671 -2 NA NA NA NA simple NA 10 32612899 32613131 10 32641218 32641356 21050837 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 32652887 32653120 11 111586701 111586776 21821883 4 + - 0 2 1 1 146 83 1 0 1 INTER cancer_singleSample OV_3_T 375 758 69 363 295 765 -12 0 10 0 0 simple NA 10 32833876 32834113 10 32837850 32838145 21052034 10 - + 0 0 1 1 142 150 1 0 1 DUP cancer_singleSample LUSC_13_T 557 767 13 545 211 767 -12 8 29 33 0,205128 simple NA 10 34089225 34089482 10 122556131 122556336 21061759 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 412 666 31 405 255 670 -7 2 5 6 0,266667 simple NA 10 34391816 34392083 10 34401329 34401636 21064145 23 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 610 606 728 118 743 4 10 19 21 0,333333 simple NA 10 35654188 35654440 10 35658760 35658967 21071934 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 35729033 35729163 10 35772299 35772433 21072312 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 36129643 36129841 10 36139383 36139549 21074585 5 - + 4 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 0 519 522 737 216 753 -3 4 19 9 0,222222 simple NA 10 36245756 36245875 10 37687495 37687713 21075460 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 38022249 38022405 10 38450795 38450940 21089273 3 - - 0 0 1 1 150 147 1 0 1 INV cancer_singleSample LUAD_3_T 257 660 0 240 241 771 -17 1 12 3 0,117647 simple NA 10 38950382 38950603 2 92087389 92087493 17073905 3 - + 0 1 1 1 43 76 1 0 1 INTER cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_16_T;chainID=1 10 38984662 38984791 10 64335864 64336010 21115836 3 + - 0 0 1 1 86 150 1 0 1 INTRA cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_16_T;chainID=1 10 39013743 39013886 10 64341826 64341991 21116127 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_16_T;chainID=1 10 42959376 42959578 10 43121467 43121678 21405996 11 + - 0 0 1 1 104 150 1 0 1 DEL cancer_singleSample COAD_1_T 0 610 607 1225 607 1225 3 7 9 22 0,311111 simple NA 10 43142786 43143045 3 117874813 117875050 17487475 7 + + 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_1_T 18 538 560 1030 471 1036 -22 5 10 10 0,333333 mild_oneoff OV_1_T;chainID=1 10 43326272 43326609 10 49584593 49584853 21408956 11 + + 0 0 1 1 72 114 1 0 1 INTRA cancer_singleSample LUAD_3_T 14 238 273 859 225 859 -35 6 7 61 0,15 simple NA 10 43483265 43483429 10 43694967 43695127 21409382 5 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 2 604 603 657 53 664 1 NA NA NA NA simple NA 10 44244196 44244364 10 44803417 44803578 21412614 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_12_T 356 966 22 356 334 966 0 9 12 15 0,4 simple NA 10 44338550 44338803 10 44339686 44339854 21413331 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 210 821 14 212 196 825 2 6 8 20 0,3 simple NA 10 44430842 44430965 10 44816814 44816936 21413859 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 44557350 44557512 3 140908686 140908872 17487618 5 + + 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 10 44557932 44558180 10 54270228 54270479 21414502 14 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 630 629 707 77 734 1 9 8 23 0,367347 extreme_stepwise LUSC_11_T;chainID=1 10 44558358 44558612 10 56564345 56564574 21414508 17 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 370 643 0 373 270 696 3 10 10 17 0,425532 extreme_stepwise LUSC_11_T;chainID=1 10 44560735 44560952 10 54253939 54254166 21414525 11 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 596 596 779 183 808 0 5 15 18 0,232558 extreme_stepwise LUSC_11_T;chainID=1 10 44595093 44595377 10 44596571 44596831 21414801 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 582 582 667 85 667 0 NA NA NA NA simple NA 10 45141994 45142215 9 130067274 130067489 18174241 6 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 46001363 46001655 10 46005068 46005378 21424070 18 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_3_T 33 278 277 869 244 869 1 8 14 16 0,347826 simple NA 10 46959670 46959839 10 58241603 58241740 21435702 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 16 610 609 1098 488 1098 1 3 29 13 0,125 simple NA 10 46977297 46977541 10 62219101 62219358 21435842 14 + - 1 2 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 49926242 49926464 12 52908394 52908632 21854738 9 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_1_T 612 791 0 613 178 807 1 5 15 14 0,25641 simple NA 10 51564970 51565291 2 106190163 106190422 17319452 11 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T 414 578 4 416 162 588 2 10 27 28 0,266667 simple NA 10 51587125 51587297 10 51588410 51588611 21465190 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 175 225 223 855 48 855 2 6 10 16 0,315789 simple NA 10 52614759 52615055 8 73783974 73784263 18146154 10 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 0 605 601 786 181 799 4 4 5 29 0,190476 mild_oneoff LUSC_11_T;chainID=2 10 52729605 52729862 5 153970686 153970933 17932645 15 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 508 1123 15 509 493 1123 1 15 25 8 0,47619 simple NA 10 52912130 52912329 10 52913243 52913427 21474138 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 53329200 53329410 10 53524576 53524819 21477559 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 296 587 37 298 259 876 2 6 19 14 0,266667 simple NA 10 54269228 54269356 10 56564511 56564640 21484835 4 + + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_11_T;chainID=1 10 55008374 55008684 10 55022665 55022927 21490912 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 610 606 837 227 854 4 6 17 17 0,26087 simple NA 10 55648468 55648682 10 55651640 55651786 21494985 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 269 267 811 267 861 2 2 14 2 0,2 simple NA 10 56055545 56055620 10 56055983 56056076 21497672 3 + - 0 0 1 1 112 150 1 0 1 DEL cancer_singleSample OV_6_T 0 225 213 272 47 273 12 NA NA NA NA simple NA 10 56887850 56887960 10 56888605 56888730 21504114 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_11_T 618 673 0 620 53 687 2 NA NA NA NA simple NA 10 59207470 59207695 10 61625996 61626285 21524207 11 - + 2 1 1 1 138 150 1 0 1 INTRA cancer_singleSample OV_9_T 0 615 611 761 146 782 4 7 14 15 0,325581 simple NA 10 59574780 59575009 X 70716730 70716954 3009568 5 - + 1 0 1 1 150 36 1 0 1 INTER cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 59592372 59592573 X 70716690 70716903 3009569 12 + - 0 0 1 1 129 80 1 0 1 INTER cancer_singleSample OV_10_T 324 495 56 327 168 520 3 4 16 6 0,266667 simple NA 10 59724574 59724738 10 81000498 81000644 21529018 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 609 608 746 137 776 1 1 10 0 0,166667 simple NA 10 60581220 60581356 10 60621889 60622149 21535078 3 - + 0 0 1 1 150 107 1 0 1 DUP cancer_singleSample BRCA_1_T 627 809 0 629 180 849 2 5 6 84 0,1 simple NA 10 60618001 60618155 10 75447224 75447381 21535447 6 - + 0 0 1 1 150 43 1 0 1 INTRA cancer_singleSample LUSC_11_T 39 721 749 948 200 968 -28 12 13 25 0,387097 simple NA 10 60869681 60869938 10 60871233 60871511 21537631 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 614 612 808 194 839 2 6 23 17 0,230769 simple NA 10 61477015 61477124 14 71881798 71881902 21873802 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_5_T;chainID=2 10 61477119 61477277 14 71881635 71881821 21873803 9 - + 1 0 1 1 144 150 1 0 1 INTER cancer_singleSample OV_5_T 0 600 598 736 136 736 2 9 16 19 0,339623 mild_oneoff OV_5_T;chainID=2 10 61477361 61477635 14 71881219 71881485 21873804 9 - - 2 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_5_T;chainID=2 10 61540520 61540685 10 61550902 61551085 21543189 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 661 1130 0 662 468 1130 1 6 13 11 0,333333 simple NA 10 62136370 62136622 10 62140350 62140612 21547410 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 54 112 110 634 56 676 2 3 14 18 0,157895 simple NA 10 62602070 62602376 10 62666334 62666551 21550728 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_9_T 0 600 598 746 146 799 2 3 12 10 0,214286 simple NA 10 63007722 63007961 10 63010142 63010366 21553817 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 610 1015 35 610 405 1016 0 4 19 16 0,186047 simple NA 10 63758687 63758842 10 64050976 64051113 21560162 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 63821157 63821302 10 63984666 63984767 21560683 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 63892339 63892588 10 63909535 63909804 21561172 6 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 275 884 29 278 246 884 3 4 16 14 0,210526 simple NA 10 64028538 64028685 10 64030051 64030205 21562286 4 + - 3 0 1 1 142 150 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 65083584 65083797 10 65086147 65086333 21570223 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 572 876 13 576 300 897 4 4 25 12 0,177778 simple NA 10 65378989 65379162 10 65386977 65387166 21572120 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 62 169 167 802 105 802 2 5 12 18 0,25 simple NA 10 65422661 65422918 10 65432032 65433301 21572341 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 66072914 66073104 10 66079589 66079944 21577767 7 + - 2 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_5_T 603 1245 0 600 601 1245 -3 5 9 8 0,37037 simple NA 10 67112878 67113043 10 67131688 67131877 21586853 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 13 387 390 864 375 884 -3 3 5 17 0,214286 simple NA 10 67819176 67819427 10 67820419 67820707 21593039 16 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 4 507 504 859 352 895 3 16 11 9 0,615385 simple NA 10 67839858 67840041 10 67843664 67843862 21593211 4 - + 0 0 1 1 150 134 1 0 1 DUP cancer_singleSample BRCA_2_T 617 816 0 618 198 823 1 12 10 8 0,571429 simple NA 10 67940645 67940872 10 67972261 67972519 21594257 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_11_T;chainID=3 10 68013660 68013888 10 68128545 68128773 21594775 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 499 940 0 501 439 944 2 3 16 18 0,15 mild_oneoff LUSC_11_T;chainID=3 10 68036522 68036768 10 78660952 78661209 21594984 18 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 172 344 27 173 145 590 1 19 9 20 0,567164 mild_oneoff LUSC_11_T;chainID=3 10 68068820 68069006 10 68075658 68075880 21595231 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 312 684 256 313 56 691 1 7 27 16 0,245614 simple NA 10 68072550 68072782 10 79804139 79804346 21595263 12 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 561 751 20 562 189 789 1 9 18 17 0,339623 mild_oneoff LUSC_11_T;chainID=3 10 68416450 68416586 10 68484452 68484557 21598178 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 68466840 68467038 10 68502441 68502677 21598634 4 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_1_T 461 1085 0 456 457 1085 -5 4 4 5 0,470588 simple NA 10 69530566 69530709 10 81440084 81440249 21607365 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 0 605 604 1007 402 1029 1 14 14 30 0,388889 simple NA 10 71298254 71298526 10 71303744 71303998 21617912 11 - + 0 2 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 0 609 608 734 125 734 1 14 14 32 0,378378 simple NA 10 72399561 72399729 10 72725841 72726005 21622486 5 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 18 347 344 597 250 597 3 8 33 18 0,238806 simple NA 10 72412901 72413119 10 72423883 72424110 21622534 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 0 538 540 837 298 837 -2 8 16 16 0,333333 simple NA 10 72737126 72737239 10 72745251 72745442 21623728 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 606 773 0 607 166 780 1 4 16 9 0,242424 simple NA 10 73051234 73051434 10 73731655 73731864 21625323 5 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T 397 972 28 398 369 996 1 5 8 9 0,37037 mild_oneoff LUSC_11_T;chainID=4 10 73433739 73433960 10 73510844 73511000 21626442 14 - + 0 0 1 1 150 149 1 0 1 DUP cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 73589588 73589793 10 73590676 73590875 21626741 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 621 969 0 610 349 969 -11 7 19 8 0,341463 simple NA 10 73776305 73776603 10 95320394 95320658 21627473 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 612 995 0 613 382 1028 1 3 8 4 0,333333 mild_oneoff LUSC_11_T;chainID=4 10 73888717 73888967 10 73890180 73890456 21627970 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 111 285 279 901 168 901 6 5 9 11 0,333333 simple NA 10 74097563 74097773 10 74099244 74099406 21628939 8 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 60 121 122 592 62 639 -1 3 22 2 0,2 simple NA 10 74242116 74242362 10 74243107 74243327 21630091 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 607 604 934 327 939 3 6 6 1 0,631579 simple NA 10 74693237 74693535 10 74999539 74999794 21633400 13 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_11_T 245 744 0 246 245 744 1 10 24 23 0,298507 simple NA 10 74811673 74811878 10 74818820 74819048 21634243 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 74843505 74843747 11 89436590 89436826 21841465 12 - - 0 0 1 1 150 101 1 0 1 INTER cancer_singleSample LUSC_11_T 36 593 592 910 317 945 1 4 31 26 0,123077 simple NA 10 75050435 75050666 10 75052888 75053165 21635970 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 608 833 0 602 226 837 -6 11 20 17 0,372881 simple NA 10 75186028 75186270 10 75189870 75190166 21636891 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 20 530 527 1101 507 1101 3 3 14 21 0,146341 simple NA 10 75454556 75454699 10 75608081 75608350 21638322 3 - + 0 0 1 1 67 150 1 0 1 DUP cancer_singleSample BRCA_2_T 605 948 0 607 341 960 2 11 65 15 0,215686 simple NA 10 75487510 75487643 10 75489420 75489556 21638430 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 617 1249 0 619 617 1249 2 0 23 16 0 simple NA 10 75500210 75500384 10 75779767 75779953 21638476 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_8_T 30 481 478 762 281 766 3 12 38 27 0,269663 simple NA 10 75947939 75948192 10 75951988 75952226 21640547 10 - + 2 1 1 1 134 138 1 0 1 DUP cancer_singleSample OV_4_T 0 480 479 753 273 759 1 5 16 9 0,285714 simple NA 10 76447383 76447583 10 76448625 76448807 21644126 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 386 533 10 389 144 617 3 11 14 15 0,431373 simple NA 10 76807592 76807760 3 123590893 123591023 17491417 3 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 76955045 76955243 10 79923958 79924188 21647539 7 + - 0 0 1 1 150 138 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 77028562 77028845 10 77095465 77095764 21647786 16 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 414 1022 48 409 362 1022 -5 11 13 36 0,309859 simple NA 10 77098167 77098413 10 77394423 77394682 21648063 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_9_T 601 868 0 603 265 892 2 9 13 16 0,382979 simple NA 10 77340062 77340272 10 77496175 77496380 21649550 9 + - 0 0 1 1 117 150 1 0 1 DEL cancer_singleSample READ_2_T 0 615 622 1228 607 1228 -7 8 11 8 0,457143 simple NA 10 77621368 77621549 10 77624652 77624870 21651514 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 27 387 380 532 145 563 7 2 23 19 0,0869565 simple NA 10 77680803 77680980 10 77692215 77692395 21651945 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 78751751 78751956 10 80622297 80622519 21660051 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 78838380 78838618 10 78849479 78849687 21660803 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 367 664 15 328 298 690 -39 2 27 16 0,0851064 simple NA 10 79131403 79131605 10 79706867 79707087 21663176 11 - + 1 2 1 1 150 131 1 0 1 DUP cancer_singleSample OV_5_T 51 676 0 54 51 676 3 15 15 15 0,5 simple NA 10 79688773 79689053 10 82131130 82131415 21665880 12 - + 2 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T 339 934 21 334 314 934 -5 7 10 14 0,368421 simple NA 10 79793290 79793491 10 79794246 79794461 21666510 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 47 186 195 818 140 818 -9 5 1 8 0,526316 mild_oneoff LUSC_11_T;chainID=3 10 81004377 81004594 10 81008246 81008447 21672436 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 635 758 0 633 124 763 -2 4 9 8 0,32 simple NA 10 82110371 82110505 10 82263931 82264119 21680748 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_3_T 0 622 615 760 138 795 7 1 12 9 0,0869565 simple NA 10 82598441 82598887 10 82607793 82608629 21683725 5 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 84607126 84607279 10 84621276 84621404 21701100 3 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 36 635 634 692 57 692 1 NA NA NA NA simple NA 10 84702595 84702832 10 95302076 95302351 21701980 9 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 589 877 1 591 286 886 2 8 10 14 0,4 mild_oneoff LUSC_11_T;chainID=4 10 85329133 85329415 10 85435447 85435677 21707894 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 611 609 991 380 996 2 11 12 22 0,392857 simple NA 10 86453992 86454129 6 100115549 100115662 17981548 3 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff COAD_1_T;chainID=1 10 86453996 86454138 4 112841922 112842057 17908336 3 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff COAD_1_T;chainID=1 10 86454213 86454444 4 112841725 112841933 17908337 14 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample COAD_1_T 82 313 308 918 226 918 5 10 30 11 0,327869 mild_oneoff COAD_1_T;chainID=1 10 86454221 86454445 6 100115332 100115537 17981549 9 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample COAD_1_T 82 313 313 749 231 759 0 12 27 14 0,369231 mild_oneoff COAD_1_T;chainID=1 10 87123230 87123439 8 139308040 139308287 18149447 5 + - 3 0 1 1 44 150 1 0 1 INTER cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 87124284 87124511 8 139307840 139308013 18149448 6 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_2_T 616 1239 0 599 600 1239 -17 0 11 11 0 simple NA 10 88230751 88230980 10 119122650 119122831 21731114 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample READ_1_T 602 1211 0 604 602 1211 2 6 11 18 0,292683 simple NA 10 89357076 89357339 10 89724432 89724677 21737561 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 522 519 786 264 795 3 13 23 28 0,337662 simple NA 10 89433714 89433934 10 89695009 89695348 21738163 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 128 737 41 132 87 737 4 9 11 3 0,5625 simple NA 10 89472935 89473189 10 89735926 89736200 21738513 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_1_T 611 751 0 607 141 761 -4 9 14 15 0,382979 simple NA 10 89507836 89507933 10 89677814 89678032 21738819 3 + - 0 0 1 1 150 77 1 0 1 DEL cancer_singleSample BRCA_5_T 314 669 60 367 254 675 53 6 6 9 0,444444 simple NA 10 89526875 89527113 10 90662939 90663209 21738979 8 + + 1 3 1 1 150 138 1 0 1 INTRA cancer_singleSample GBM_9_T 0 572 571 1202 571 1202 1 13 2 1 0,896552 simple NA 10 89614912 89615041 10 90008109 90008247 21739506 4 + - 0 0 1 1 116 150 1 0 1 DEL cancer_singleSample GBM_16_T 626 836 0 626 210 839 0 10 2 13 0,571429 simple NA 10 89628629 89628761 10 90697124 90697357 21739552 5 - - 0 3 1 1 150 140 1 0 1 INTRA cancer_singleSample GBM_9_T 614 1100 0 615 485 1123 1 14 2 3 0,848485 simple NA 10 89645539 89645740 10 89696350 89696585 21739620 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 86 704 12 89 74 704 3 7 2 6 0,636364 simple NA 10 89679615 89679867 3 190622495 190622729 17492621 5 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_4_T 0 622 620 670 48 677 2 NA NA NA NA simple NA 10 89687437 89687590 10 89692957 89693117 21739923 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 0 607 606 1228 606 1228 1 13 13 12 0,509804 simple NA 10 89696658 89696945 10 89720112 89720375 21739983 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_12_T 3 606 598 817 211 849 8 0 11 12 0 simple NA 10 89708975 89709096 2 169967074 169967173 17327512 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_10_T 27 502 521 895 375 895 -19 1 0 16 0,111111 simple NA 10 90013676 90013967 10 90245921 90246263 21743133 19 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 608 1225 2 610 606 1225 2 10 9 1 0,666667 simple NA 10 90082404 90082550 10 90083136 90083290 21743909 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_16_T 0 608 608 1241 608 1241 0 8 6 11 0,484848 simple NA 10 90205617 90205824 10 90408672 90408927 21745163 6 - + 0 0 1 1 138 150 1 0 1 DUP cancer_singleSample BRCA_5_T 436 1048 9 438 427 1048 2 5 18 6 0,294118 simple NA 10 90467475 90467636 10 90468681 90468848 21747669 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 13 268 266 441 173 651 2 9 6 7 0,580645 simple NA 10 90788120 90788262 10 90797510 90798127 21750114 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 91293360 91293482 10 95321220 95321365 21754297 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 721 1031 8 722 309 1031 1 2 9 14 0,148148 mild_oneoff LUSC_11_T;chainID=4 10 92168700 92168827 10 92175031 92175199 21761461 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 727 935 0 730 205 965 3 8 10 11 0,432432 simple NA 10 92172523 92172711 10 92173251 92173400 21761532 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 31 343 341 455 112 730 2 5 9 5 0,416667 simple NA 10 93621995 93622228 10 93706571 93706830 21773664 6 - + 0 0 1 1 150 134 1 0 1 DUP cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 97320760 97320969 10 97325135 97325270 21802050 3 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 623 872 0 615 250 872 -8 2 8 17 0,137931 simple NA 10 97373336 97373561 X 146451270 146451457 3012304 12 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample COAD_1_T 602 767 0 604 163 772 2 8 15 7 0,421053 simple NA 10 97438788 97439029 9 104487217 104487433 18178328 8 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T 282 906 67 283 215 911 1 10 11 27 0,344828 simple NA 10 98997154 98997360 10 99038258 99038498 21813324 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 99157012 99157266 10 99199530 99199851 21814015 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 342 511 14 426 85 517 84 2 8 19 0,129032 simple NA 10 99669634 99669883 10 110971631 110971877 21816258 8 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 0 635 634 1078 443 1082 1 9 10 19 0,382979 simple NA 10 100027043 100027339 10 100037991 100038206 20696304 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 0 588 582 1166 578 1166 6 4 10 5 0,347826 simple NA 10 102717123 102717270 10 102720667 102720782 20714263 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 104487525 104487760 10 104496669 104496926 20722805 5 + - 0 0 1 1 150 124 1 0 1 DEL cancer_singleSample LUAD_5_T 19 218 231 664 200 676 -13 0 13 1 0 simple NA 10 104885525 104885724 10 104892964 104893121 20725012 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 210 562 29 211 181 849 1 7 25 18 0,245614 simple NA 10 105370777 105371045 10 105620461 105620575 20727551 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 242 855 76 241 166 855 -1 6 1 10 0,521739 simple NA 10 105438771 105438944 10 105458267 105458420 20727726 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 329 326 950 326 950 3 4 12 18 0,210526 simple NA 10 105532756 105532959 10 105626130 105626311 20728129 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_1_T 44 541 544 624 81 675 -3 4 10 14 0,25 simple NA 10 105768180 105768362 10 105771114 105771301 20729377 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_3_T 0 647 645 1061 414 1061 2 3 13 8 0,222222 simple NA 10 105954517 105954809 10 105957206 105957515 20730679 16 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 609 616 1225 610 1225 -7 18 7 4 0,765957 simple NA 10 106104110 106104227 10 106107885 106108054 20731367 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 4 107 105 499 101 534 2 6 9 10 0,387097 simple NA 10 106898742 106898992 10 106899564 106899788 20737971 11 + - 0 0 1 1 143 150 1 0 1 DEL cancer_singleSample OV_10_T 168 750 0 170 168 750 2 5 11 8 0,344828 simple NA 10 107896534 107896766 10 107899398 107899649 20747208 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 613 605 763 150 783 8 7 2 3 0,736842 simple NA 10 108252348 108252515 10 108261897 108262083 20750138 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_3_T 590 1142 0 591 551 1142 1 6 7 5 0,5 simple NA 10 108831678 108831897 10 108835604 108835892 20754221 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 4 616 609 729 113 752 7 5 15 14 0,25641 simple NA 10 108870417 108870582 10 109065887 109066084 20754573 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 34 364 361 1060 327 1060 3 6 10 26 0,25 simple NA 10 110594544 110594762 10 110600099 110600336 20771013 18 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 607 624 762 139 762 -17 5 8 9 0,37037 simple NA 10 110625464 110625605 10 111810288 111810468 20771359 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_5_T 684 1285 0 687 598 1285 3 7 4 18 0,388889 simple NA 10 111981438 111981640 10 115997714 115997891 20782797 8 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_6_T 25 199 198 418 173 418 1 9 17 18 0,339623 simple NA 10 112269633 112269808 10 112281296 112281561 20784330 7 - + 1 3 1 1 150 124 1 0 1 DUP cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_9_T;chainID=1 10 112269679 112269795 10 112282096 112282292 20784331 3 + + 1 1 1 1 150 150 1 0 1 INV cancer_singleSample OV_9_T 636 869 0 638 231 940 2 7 15 22 0,27451 mild_oneoff OV_9_T;chainID=1 10 112270263 112270436 10 112282495 112282725 20784343 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_9_T 603 926 0 604 322 939 1 1 9 16 0,0740741 mild_oneoff OV_9_T;chainID=1 10 113366726 113366930 10 113443642 113443993 20791823 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 238 828 145 238 93 828 0 2 13 14 0,129032 simple NA 10 113488890 113489078 10 113494955 113495136 20792619 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 113691531 113691672 10 113707762 113708460 20794391 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 113730210 113730406 10 113735627 113735768 20794697 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 114605263 114605531 10 114607598 114607783 20800055 5 + - 0 0 1 1 150 130 1 0 1 DEL cancer_singleSample OV_10_T 0 429 429 641 212 682 0 9 13 6 0,486486 simple NA 10 115686438 115686723 10 115737740 115738017 20806433 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 520 1008 8 521 487 1020 1 5 18 25 0,188679 simple NA 10 115861592 115861705 10 115862113 115862241 20807460 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T 21 317 307 756 286 765 10 5 8 0 0,555556 simple NA 10 115920669 115920914 10 115924898 115925114 20807983 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 0 628 624 985 357 985 4 3 8 4 0,333333 simple NA 10 116915681 116915872 10 116916733 116916944 20813959 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 611 622 751 130 751 -11 8 15 9 0,4 simple NA 10 116920998 116921220 10 116928092 116928305 20814031 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 223 330 29 224 106 675 1 11 19 22 0,349206 simple NA 10 118417961 118418107 10 118425475 118425653 20824512 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample COAD_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 120137055 120137227 10 120140661 120140860 20834282 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 48 271 268 956 220 956 3 7 6 1 0,666667 simple NA 10 122182904 122183064 10 122191255 122191470 20845746 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 56 355 363 856 300 862 -8 7 17 13 0,318182 simple NA 10 122579664 122579850 10 122581391 122581607 20848374 7 + - 0 1 1 1 150 146 1 0 1 DEL cancer_singleSample OV_6_T 0 599 599 1043 444 1056 0 5 10 15 0,285714 simple NA 10 123082503 123082640 10 123201404 123201545 20851429 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 0 615 612 827 212 923 3 8 18 21 0,290909 simple NA 10 123261026 123261158 10 123264546 123264660 20852474 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample COAD_3_T 0 615 613 801 186 820 2 6 27 20 0,20339 simple NA 10 126695311 126695526 10 126716390 126716600 20868018 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 10 127020297 127020534 10 127075666 127075872 20869520 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 111 740 8 112 103 740 1 11 17 20 0,372881 simple NA 10 127377929 127378186 10 127378939 127379233 20872605 13 + - 1 1 1 1 150 149 1 0 1 DEL cancer_singleSample OV_5_T 606 956 0 605 351 959 -1 8 11 14 0,390244 simple NA 10 127428851 127428998 10 127487616 127487742 20872882 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 135 673 667 765 92 796 6 5 25 24 0,169492 simple NA 10 129898925 129899166 10 129918290 129918497 20885072 5 - + 0 0 1 1 150 139 1 0 1 DUP cancer_singleSample OV_10_T 278 627 625 677 50 752 2 6 21 15 0,25 simple NA 10 129979337 129979598 10 129985664 129985911 20885451 12 - + 0 2 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 627 762 0 627 135 772 0 2 14 4 0,181818 simple NA 10 131915497 131915763 10 131929839 131930141 20892716 15 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 602 741 0 606 135 765 4 8 10 16 0,380952 simple NA 10 133531068 133531237 3 186374965 186375127 17331933 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_1_T;chainID=1 10 133922966 133923208 4 146629577 146629751 17496860 7 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_6_T 424 492 28 431 61 546 7 5 14 19 0,232558 simple NA 10 134957993 134958107 10 134959830 134960110 20901334 5 + - 0 0 1 1 127 150 1 0 1 DEL cancer_singleSample BRCA_8_T 0 622 621 794 172 827 1 10 12 14 0,434783 simple NA 11 424483 424716 3 174768296 174768597 18295792 13 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_6_T 8 166 165 600 157 625 1 15 20 35 0,352941 simple NA 11 1152813 1153049 19 58829048 58829321 23098494 9 - + 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 2126475 2126599 11 2289082 2289236 22825245 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample COAD_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 2520874 2521076 11 14140276 14140490 22837022 8 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_10_T 34 157 191 468 124 483 -34 14 24 13 0,430769 simple NA 11 3912779 3912980 11 3939504 3939729 22880691 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 5 244 256 324 69 361 -12 10 23 3 0,434783 simple NA 11 3944459 3944673 3 10225404 10225616 18295214 9 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 4739695 4739900 11 4741171 4741380 22904989 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 553 935 24 541 383 949 -12 9 6 12 0,5 simple NA 11 4834453 4834599 11 5696573 5696769 22907742 4 - + 0 1 1 1 150 89 1 0 1 DUP cancer_singleSample BRCA_5_T 0 613 611 759 146 770 2 9 19 21 0,310345 simple NA 11 5189743 5189922 11 5235462 5235696 22946057 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 304 397 194 305 92 514 1 7 20 22 0,25 simple NA 11 7652461 7652679 11 7670385 7670623 22997087 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T 272 511 11 249 239 715 -23 4 14 20 0,190476 simple NA 11 8075173 8075367 11 8076499 8076714 23009144 9 + - 0 0 1 1 64 150 1 0 1 DEL cancer_singleSample OV_6_T 15 259 259 309 50 352 0 NA NA NA NA simple NA 11 8700674 8700854 11 8709003 8709230 23027720 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 9574450 9574547 11 9599935 9600146 23056220 4 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_7_T 0 167 163 700 163 701 4 2 10 4 0,222222 simple NA 11 9586735 9586851 3 66088575 66088708 18324794 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_17_T 362 593 0 364 229 605 2 2 11 4 0,210526 simple NA 11 9950438 9950637 11 9951087 9951311 23066987 6 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T 480 1101 29 483 451 1101 3 3 5 4 0,4 simple NA 11 11319161 11319550 9 24156122 24156497 18524144 28 + - 1 0 1 1 149 146 1 0 1 INTER cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_6_T;chainID=2 11 11319719 11320052 11 11624452 11624808 22760645 24 - - 2 0 1 1 144 150 1 0 1 INV cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_6_T;chainID=2 11 11468241 11468589 11 11470941 11471281 22764067 12 + - 2 1 1 1 148 145 1 0 1 DEL cancer_singleSample GBM_6_T 588 1046 0 589 457 1053 1 4 2 5 0,533333 mild_oneoff GBM_6_T;chainID=2 11 11475867 11476225 11 11623580 11623945 22764267 26 - + 2 1 1 1 139 149 1 0 1 DUP cancer_singleSample GBM_6_T 536 733 0 538 195 737 2 4 13 6 0,296296 mild_oneoff GBM_6_T;chainID=2 11 12873196 12873438 11 12896394 12896649 22792802 19 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 607 681 0 609 72 684 2 NA NA NA NA mild_oneoff LUSC_13_T;chainID=1 11 12881585 12881876 11 12896648 12896938 22792890 21 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 584 581 969 385 990 3 19 34 16 0,431818 mild_oneoff LUSC_13_T;chainID=1 11 12884232 12884416 11 12895930 12896127 22792932 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 544 957 2 526 414 982 -18 8 30 20 0,242424 mild_oneoff LUSC_13_T;chainID=1 11 13176311 13176515 11 58216299 58216464 22799135 9 - - 0 0 1 1 150 107 1 0 1 INTRA cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 13262241 13262392 7 107410598 107410679 18432702 3 + - 0 8 1 1 150 41 1 0 1 INTER cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 13323146 13323382 11 13326801 13327098 22802834 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 277 498 17 278 220 511 1 6 22 15 0,244898 simple NA 11 13762743 13762949 11 13771272 13771511 22806355 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 604 976 0 605 371 1022 1 3 15 9 0,2 simple NA 11 13769189 13769555 11 14240046 14240612 22806397 107 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_6_T 20 265 264 746 244 762 1 29 12 20 0,644444 extreme_stepwise LUSC_6_T;chainID=1 11 13850674 13850915 11 43470462 43470644 22806740 26 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 12 323 322 504 181 554 1 34 8 32 0,62963 extreme_stepwise LUSC_6_T;chainID=1 11 14128109 14128225 11 29387841 29387971 22807497 3 - - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_10_T 26 538 669 1075 407 1075 -131 16 12 17 0,52459 simple NA 11 14272326 14272694 11 24217820 24218230 22807955 16 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 0 607 606 863 256 863 1 35 30 17 0,598291 extreme_stepwise LUSC_6_T;chainID=1 11 14276049 14276427 11 22802119 22802365 22807958 19 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_6_T;chainID=1 11 14664810 14665025 11 14667791 14668091 22808881 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 19 621 620 882 261 882 1 4 4 21 0,242424 simple NA 11 14805366 14805581 14 28794255 28794474 23085173 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 14835031 14835444 3 182009695 182010196 18288528 100 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_6_T 383 828 5 382 378 835 -1 45 37 58 0,486486 extreme_stepwise LUSC_6_T;chainID=1 11 15407484 15407884 11 26635866 26636192 22810830 53 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 428 729 16 431 298 848 3 29 31 21 0,527273 extreme_stepwise LUSC_6_T;chainID=1 11 15408813 15409106 11 22808256 22808582 22810836 37 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 15 430 430 834 404 848 0 21 31 30 0,407767 extreme_stepwise LUSC_6_T;chainID=1 11 15425846 15426134 11 24754435 24754702 22810885 27 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 6 60 59 718 53 735 1 20 36 22 0,408163 extreme_stepwise LUSC_6_T;chainID=1 11 15442781 15443056 3 182934393 182934670 18288752 29 - - 0 0 1 1 150 138 1 0 1 INTER cancer_singleSample LUSC_6_T 0 613 613 752 139 752 0 26 37 0 0,58427 extreme_stepwise LUSC_6_T;chainID=1 11 15459200 15459402 8 65997352 65997573 18508130 6 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 15938804 15938997 6 163481112 163481323 18389976 5 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 16070906 16071183 11 16412552 16412794 22812749 19 + - 0 0 1 1 150 128 1 0 1 DEL cancer_singleSample LUSC_6_T 239 775 24 242 215 775 3 13 54 82 0,160494 simple NA 11 16549819 16549991 11 16553814 16554017 22814405 3 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T 628 1298 0 630 628 1298 2 2 20 19 0,0930233 simple NA 11 17049109 17049228 11 18049658 18049887 22815519 4 - - 0 0 1 1 119 150 1 0 1 INTRA cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 17049388 17049498 11 18049622 18049767 22815521 6 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 18224651 18224829 11 18331894 18332070 22817683 8 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 0 653 650 889 236 926 3 2 17 17 0,105263 simple NA 11 18730124 18730205 9 107849978 107850119 18525747 3 - - 7 0 1 1 31 108 1 0 1 INTER cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 20405099 20405283 8 86254643 86254804 18508829 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 0 623 622 820 197 858 1 3 26 35 0,0895522 simple NA 11 20648089 20648378 11 20730716 20730983 22823262 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 611 774 0 612 162 832 1 10 24 34 0,25641 simple NA 11 20833450 20833625 3 190305212 190305364 18290052 6 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 259 706 194 262 65 720 3 8 4 31 0,313725 simple NA 11 22465071 22465318 11 22776471 22776770 22828942 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_1_T 622 910 0 624 286 916 2 4 27 25 0,133333 simple NA 11 22710346 22710513 9 36085441 36085604 18526138 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_16_T 610 699 0 614 85 715 4 3 8 9 0,26087 simple NA 11 22711488 22711625 9 36031746 36031945 18526139 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 23289546 23289661 2 191473168 191473333 18224743 4 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_10_T 619 1262 21 620 598 1262 1 3 10 21 0,162162 simple NA 11 23980392 23980619 11 23989594 23989821 22833252 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 28 495 523 625 103 626 -28 17 33 26 0,365591 simple NA 11 23993118 23993269 11 23997166 23997359 22833270 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 5 113 112 363 107 463 1 7 6 13 0,424242 simple NA 11 24003178 24003492 11 24005073 24005371 22833302 25 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 373 768 42 375 331 769 2 15 22 18 0,428571 simple NA 11 24636300 24636587 11 24646496 24647492 22835433 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 24999787 24999952 X 77313819 77313922 4875899 3 + + 0 4 1 1 150 37 1 0 1 INTER cancer_singleSample LUSC_10_T 63 426 414 893 351 900 12 8 19 10 0,355556 simple NA 11 25000840 25001123 11 25003130 25003399 22836416 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 600 886 0 602 284 928 2 15 26 37 0,322581 simple NA 11 25438227 25438444 11 25445448 25445614 22837917 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 608 1221 3 609 605 1221 1 3 7 6 0,315789 simple NA 11 25701636 25701877 22 29065356 29065551 23101080 6 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 19 546 546 871 325 903 0 9 14 28 0,3 simple NA 11 26106085 26106320 11 26745316 26745552 22839953 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 26529561 26529831 11 38204478 38204670 22841238 12 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T 8 386 385 589 203 668 1 18 12 24 0,5 simple NA 11 27314481 27315056 11 27323809 27324502 22844137 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 27856705 27856936 11 27860486 27860763 22845623 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 16 445 442 827 382 868 3 7 16 26 0,25 simple NA 11 28041927 28042056 11 28054468 28054592 22846383 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 642 1255 0 643 612 1255 1 5 22 23 0,181818 simple NA 11 28875200 28875359 11 28886916 28887093 22849047 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T 28 300 330 569 240 607 -30 7 25 20 0,237288 simple NA 11 28890178 28890511 11 30253695 30254030 22849081 10 - + 2 0 1 1 145 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_6_T;chainID=3 11 28890998 28891213 11 29044637 29044866 22849090 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_6_T;chainID=3 11 29513402 29513756 11 33790915 33791235 22851540 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 29803524 29803779 11 30334128 30334467 22852580 12 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_6_T 597 1196 0 597 597 1196 0 8 10 8 0,470588 mild_oneoff GBM_6_T;chainID=3 11 30037004 30037275 11 30038226 30038519 22853405 6 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 30519412 30519642 11 33483937 33484169 22854883 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 30639883 30640009 11 30641192 30641372 22855274 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 0 580 579 710 130 767 1 5 2 11 0,434783 simple NA 11 31855474 31855674 11 31858383 31858617 22858845 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 600 1020 0 603 417 1059 3 10 15 16 0,392157 simple NA 11 32157355 32157531 11 32229694 32229900 22859802 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_5_T 642 694 0 653 41 697 11 NA NA NA NA simple NA 11 32274750 32275005 11 32276238 32276506 22860057 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 0 614 607 686 72 693 7 NA NA NA NA simple NA 11 32707525 32707776 11 32715488 32715793 22860926 23 + - 0 0 1 1 150 82 1 0 1 DEL cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 33154732 33154930 11 33166249 33166447 22862258 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 404 1019 1017 1171 152 1175 2 2 19 5 0,142857 simple NA 11 33230368 33230521 9 131451829 131451909 18527787 3 - - 0 0 1 1 150 98 1 0 1 INTER cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 34006243 34006439 3 89509511 89509692 18293372 4 + - 0 0 1 1 150 83 1 0 1 INTER cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 34433331 34433543 11 34438824 34439040 22865128 14 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 42 409 417 585 169 612 -8 9 33 24 0,24 simple NA 11 34547026 34547161 11 34634978 34635233 22865382 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 34552062 34552276 11 35064933 35065159 22865400 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 34571258 34571548 11 34700231 34700471 22865486 12 - + 0 0 1 1 150 145 1 0 1 DUP cancer_singleSample OV_3_T 585 899 0 588 311 900 3 6 13 5 0,4 simple NA 11 34593819 34594055 11 34944347 34944586 22865538 5 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 0 585 583 770 185 774 2 8 27 26 0,231884 simple NA 11 34676408 34676617 11 34718185 34718366 22865960 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 28 115 113 697 85 697 2 6 17 5 0,352941 simple NA 11 35218685 35218887 8 128790704 128790931 18511507 6 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise BRCA_4_T;chainID=3 11 35529894 35530214 11 36330506 36330795 22869354 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_2_T 206 458 29 210 177 465 4 8 26 24 0,242424 simple NA 11 35957908 35958117 11 35972777 35973029 22870705 15 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 498 897 0 495 400 917 -3 1 29 32 0,031746 simple NA 11 36057657 36057956 11 36062724 36063003 22870945 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 603 731 0 609 122 733 6 9 22 29 0,26087 simple NA 11 36084779 36084950 12 123518313 123518509 23073552 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T 231 315 313 937 82 937 2 7 45 19 0,179487 simple NA 11 36244648 36244856 11 36256787 36256968 22871520 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 36273306 36273481 11 36288687 36288882 22871580 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 649 646 850 201 850 3 4 24 27 0,135593 simple NA 11 37675843 37676067 11 37676903 37677029 22876053 3 + - 0 0 1 1 150 118 1 0 1 DEL cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 37958251 37958484 11 37960366 37960635 22877147 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 24 355 355 887 331 1048 0 7 30 23 0,208955 simple NA 11 38276585 38276801 11 38277346 38277539 22878152 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 449 685 46 451 234 690 2 5 23 19 0,192308 simple NA 11 38342038 38342314 11 126270221 126270544 22878284 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T 626 1220 0 627 593 1220 1 0 9 17 0 simple NA 11 38400262 38400562 14 92116742 92117035 23086550 20 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 0 368 366 863 366 876 2 10 18 1 0,512821 simple NA 11 38759103 38759259 11 38759835 38759985 22879564 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T 603 1308 0 605 603 1308 2 5 16 23 0,204082 simple NA 11 39206293 39206433 11 39235393 39235543 22880898 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 561 779 195 566 213 815 5 4 17 17 0,190476 simple NA 11 39231721 39231855 20 62657866 62658042 23100265 4 + - 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T 43 391 385 713 322 716 6 2 34 6 0,0909091 simple NA 11 39367740 39367956 5 117124614 117124809 18368057 7 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_10_T 23 626 626 697 71 763 0 7 10 11 0,4 simple NA 11 39400491 39400714 11 67591248 67591482 22881261 16 - + 0 0 1 1 150 76 1 0 1 INTRA cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 39492551 39492743 11 39495011 39495203 22881524 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 39984776 39984975 11 39988269 39988542 22883199 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 42 480 478 1057 436 1057 2 3 13 21 0,15 simple NA 11 40653638 40653936 11 40656204 40656510 22885458 13 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_1_T 0 601 605 756 152 756 -4 11 24 16 0,354839 simple NA 11 40872698 40873007 11 42223449 42223776 22886209 8 + - 0 0 1 1 129 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 0 567 564 666 99 697 3 4 6 18 0,25 simple NA 11 40935125 40935373 11 40936479 40936673 22886379 8 + - 0 0 1 1 41 71 1 0 1 DEL cancer_singleSample LUSC_11_T 656 828 0 650 173 885 -6 17 26 113 0,196532 simple NA 11 41665469 41665728 11 45521318 45521521 22888551 9 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_10_T 618 1027 1 594 410 1078 -24 14 23 13 0,4375 simple NA 11 45737223 45737439 11 45797134 45797319 22901444 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T 0 650 649 916 266 919 1 7 15 22 0,27451 simple NA 11 46016951 46017143 11 46025093 46025281 22901970 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 504 1135 0 505 504 1135 1 5 14 6 0,333333 simple NA 11 46622130 46622240 11 46737037 46737164 22903327 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_10_T 618 786 0 619 167 836 1 5 20 10 0,25 simple NA 11 46776450 46776653 11 46789192 46789362 22903708 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 1 195 195 814 194 814 0 5 13 17 0,25 simple NA 11 47140332 47140548 11 47141348 47141622 22904562 14 + - 0 0 1 1 107 105 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 47301317 47301534 11 47854330 47854587 22904873 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_1_T 184 369 56 185 128 371 1 8 12 32 0,266667 simple NA 11 47358805 47358915 11 47444407 47444558 22904956 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 0 558 557 685 127 724 1 10 25 17 0,322581 simple NA 11 47405539 47405718 11 47406507 47406737 22904999 5 + - 0 0 1 1 131 125 1 0 1 DEL cancer_singleSample GBM_18_T 433 1224 71 729 362 1224 296 7 2 14 0,466667 simple NA 11 48252549 48252843 11 48262975 48263176 22907316 8 + - 0 0 1 1 44 150 1 0 1 DEL cancer_singleSample OV_4_T 606 971 0 608 363 971 2 14 32 18 0,358974 simple NA 11 49732463 49732671 3 133508207 133508469 18307056 4 + + 0 1 1 1 33 150 1 0 1 INTER cancer_singleSample OV_1_T 626 682 0 628 54 712 2 NA NA NA NA simple NA 11 49732751 49732973 8 73086907 73087031 18514518 3 - + 2 2 1 1 40 116 1 0 1 INTER cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 49997924 49998174 2 88585029 88585223 18240936 5 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_8_T 365 713 287 367 78 726 2 4 111 43 0,0493827 simple NA 11 50053528 50053585 7 65286424 65286506 18456160 6 + + 2 0 1 1 51 148 1 0 1 INTER cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 51562693 51562970 2 229505757 229506089 18247110 9 - + 0 0 1 1 133 150 1 0 1 INTER cancer_singleSample LUSC_8_T 466 851 7 464 386 932 -2 5 31 31 0,138889 mild_oneoff LUSC_8_T;chainID=1 11 51563443 51563663 11 57867799 57867974 22944328 5 - - 0 0 1 1 85 150 1 0 1 INTRA cancer_singleSample LUSC_8_T 523 674 0 528 146 739 5 5 19 21 0,2 mild_oneoff LUSC_8_T;chainID=1 11 51565173 51565370 2 229499770 229499976 18247111 4 + - 0 0 1 1 37 126 1 0 1 INTER cancer_singleSample LUSC_8_T 61 180 184 420 120 422 -4 4 22 34 0,125 mild_oneoff LUSC_8_T;chainID=1 11 55733358 55733491 X 71401470 71401561 4987758 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_3_T 0 420 419 918 419 936 1 1 9 1 0,166667 simple NA 11 55733433 55733575 X 71401854 71402007 4987759 4 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_3_T 692 1320 4 694 626 1320 2 2 8 1 0,307692 simple NA 11 56104268 56104400 3 168784771 168785017 18315048 24 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 11 56534161 56534365 11 56625077 56625242 22956379 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 56550882 56551027 11 127297241 127297475 22956435 6 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 57869289 57869418 2 237280648 237280774 18267287 3 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_8_T 12 146 145 518 133 596 1 5 21 23 0,185185 mild_oneoff LUSC_8_T;chainID=1 11 58453638 58453948 11 58622660 58622936 22962241 5 + - 2 1 1 1 137 150 1 0 1 DEL cancer_singleSample OV_1_T 464 779 32 464 315 804 0 5 25 14 0,204082 simple NA 11 58727804 58728061 8 143385196 143385435 18515657 3 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 59239731 59239907 11 59273384 59273510 22965488 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 59327636 59327832 9 124509117 124509319 18557409 4 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 54 320 317 651 263 671 3 1 12 19 0,0606061 simple NA 11 59869034 59869311 11 59876383 59876707 22967074 17 + - 2 2 1 1 95 136 1 0 1 DEL cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 60414649 60414916 11 60415615 60415858 22968508 5 + - 1 0 1 1 131 137 1 0 1 DEL cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 60683939 60684246 18 69528719 69528964 23098208 15 - + 1 0 1 1 150 144 1 0 1 INTER cancer_singleSample OV_11_T 567 922 0 567 355 951 0 6 14 18 0,272727 simple NA 11 60807874 60808131 11 60811875 60812119 22969278 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 3 653 665 1020 356 1038 -12 1 18 8 0,0714286 simple NA 11 61579359 61579533 11 61604847 61605073 22971057 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 201 289 0 204 85 290 3 NA NA NA NA simple NA 11 61611627 61611764 11 61617125 61617388 22971108 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 61732070 61732293 3 123591743 123591975 18316323 5 - - 0 0 1 1 66 150 1 0 1 INTER cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 63190109 63190220 8 120250148 120250324 18516224 5 + - 4 0 1 1 48 47 1 0 1 INTER cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 63511712 63511813 11 63599512 63599627 22975450 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 63530967 63531106 4 140964212 140964394 18346848 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_12_T 623 812 0 616 190 852 -7 5 0 9 0,526316 simple NA 11 63603084 63603312 11 63615721 63615945 22975586 6 - + 1 0 1 1 150 129 1 0 1 DUP cancer_singleSample BRCA_2_T 476 768 0 479 289 769 3 0 12 6 0 simple NA 11 63966971 63967051 11 63967483 63967591 22975944 3 + - 0 0 1 1 132 150 1 0 1 DEL cancer_singleSample OV_6_T 3 442 499 816 318 824 -57 0 8 10 0 simple NA 11 63969792 63970011 11 64200747 64200954 22975948 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 536 689 73 540 149 757 4 2 12 14 0,133333 simple NA 11 64375197 64375418 11 123129836 123130003 22976295 9 - + 0 0 1 1 142 150 1 0 1 INTRA cancer_singleSample OV_6_T 443 723 30 444 279 726 1 5 7 21 0,263158 mild_oneoff OV_6_T;chainID=1 11 64590165 64590411 11 64606525 64606780 22976501 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 90 621 0 90 90 621 0 7 14 5 0,424242 simple NA 11 64735076 64735296 11 65097929 65098124 22976654 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 34 192 190 443 156 457 2 9 13 18 0,367347 simple NA 11 64774184 64774444 11 65724373 65724664 22976702 6 - - 2 3 1 1 150 150 1 0 1 INV cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 64997158 64997387 11 64998727 64998966 22976901 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 3 361 358 669 308 685 3 11 18 8 0,458333 simple NA 11 65200080 65200296 11 65283110 65283317 22977188 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 524 668 159 526 142 686 2 10 18 26 0,3125 simple NA 11 65211544 65211759 11 65219782 65220036 22977198 5 - + 0 0 1 1 150 97 1 0 1 DUP cancer_singleSample LUSC_13_T 29 557 557 776 219 776 0 0 8 18 0 simple NA 11 65273904 65274104 11 65288521 65288771 22977272 4 - + 0 0 1 1 150 102 1 0 1 DUP cancer_singleSample BRCA_9_T 89 721 718 775 54 776 3 NA NA NA NA simple NA 11 65485450 65485635 11 65490268 65490448 22977462 7 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 623 696 0 625 71 720 2 NA NA NA NA simple NA 11 66391201 66391453 14 91932076 91932287 23087794 8 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T 0 635 632 841 206 841 3 11 23 30 0,293333 simple NA 11 66529908 66530091 11 67270601 67270867 22978644 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_2_T 220 606 28 220 192 625 0 3 4 4 0,428571 simple NA 11 67578899 67579068 11 67917248 67917431 22980492 4 + - 0 0 1 1 44 150 1 0 1 DEL cancer_singleSample GBM_17_T 84 240 236 662 152 664 4 12 4 12 0,6 mild_oneoff GBM_17_T;chainID=1 11 67858182 67858331 17 70238436 70238630 23096437 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_17_T 632 1133 0 633 500 1160 1 9 6 11 0,514286 mild_oneoff GBM_17_T;chainID=1 11 67955732 67955942 X 142879328 142879542 4989998 6 - - 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T 22 338 335 438 100 464 3 2 9 12 0,16 mild_oneoff LUSC_13_T;chainID=2 11 67998072 67998241 17 74484515 74484653 23096438 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_17_T 391 711 3 393 318 718 2 1 10 4 0,125 mild_oneoff GBM_17_T;chainID=1 11 67998843 67998995 17 70574300 70574437 23096439 3 - - 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_17_T 0 693 695 1158 464 1188 -2 7 9 11 0,411765 mild_oneoff GBM_17_T;chainID=1 11 68191686 68191946 11 68462474 68462731 22981901 6 - + 2 0 1 1 148 150 1 0 1 DUP cancer_singleSample OV_6_T 313 482 0 318 164 482 5 8 25 18 0,271186 simple NA 11 68193084 68193295 11 68197784 68198003 22981903 10 + - 1 0 1 1 144 108 1 0 1 DEL cancer_singleSample OV_6_T 140 668 24 144 116 672 4 8 22 34 0,222222 simple NA 11 68270284 68270524 17 76994053 76994297 23096447 7 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_17_T 577 948 0 577 371 953 0 4 15 7 0,266667 mild_oneoff GBM_17_T;chainID=1 11 68799314 68799557 11 69151831 69152049 22982773 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 0 603 602 724 121 724 1 4 20 17 0,177778 simple NA 11 68822607 68822707 11 69074464 69074704 22982798 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 69816011 69816275 11 70114559 70114916 22983791 45 - - 1 1 1 1 148 149 1 0 1 INV cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 70066609 70066836 11 70075197 70075457 22984096 4 - + 0 0 1 1 94 150 1 0 1 DUP cancer_singleSample BRCA_5_T 49 288 286 739 237 760 2 11 14 26 0,354839 simple NA 11 70298298 70298553 11 70307433 70307661 22984438 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 193 501 0 195 193 501 2 7 3 9 0,538462 simple NA 11 70316620 70316865 11 118780659 118780908 22984447 10 - + 1 1 1 1 146 150 1 0 1 INTRA cancer_singleSample OV_6_T 25 117 114 460 89 460 3 7 19 13 0,304348 mild_oneoff OV_6_T;chainID=2 11 71267482 71267722 11 77660314 77660448 22985481 4 + - 2 1 1 1 75 44 1 0 1 INTRA cancer_singleSample OV_1_T 71 181 179 506 108 509 2 10 19 46 0,235294 simple NA 11 71428783 71428883 11 71439332 71439559 22985967 3 - + 0 0 1 1 31 67 1 0 1 DUP cancer_singleSample BRCA_9_T 524 828 35 524 304 828 0 6 25 59 0,125 simple NA 11 72087790 72087900 11 72515619 72515723 22987317 3 - + 0 0 1 1 138 137 1 0 1 DUP cancer_singleSample BRCA_10_T 20 172 157 555 137 555 15 0 20 21 0 simple NA 11 72188605 72188802 11 72595333 72595497 22987569 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 37 209 207 543 170 551 2 6 13 26 0,235294 simple NA 11 72780479 72780717 11 72899592 72899825 22988729 7 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 72976530 72976751 8 128827126 128827397 18517097 20 - + 3 2 1 1 149 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 73364410 73364696 11 73365920 73366149 22989915 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 147 632 4 148 143 632 1 16 18 20 0,457143 simple NA 11 73576770 73577044 4 77151879 77152086 18348078 6 + + 1 1 1 1 95 123 1 0 1 INTER cancer_singleSample BRCA_1_T 620 798 0 621 177 803 1 5 12 12 0,294118 simple NA 11 73606001 73606199 7 133972669 133972786 18500549 3 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_11_T 236 755 87 238 149 755 2 8 34 23 0,219178 simple NA 11 74100944 74101022 3 155671724 155671833 18319555 3 - - 2 0 1 1 52 150 1 0 1 INTER cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 74430133 74430338 11 118725413 118725535 22992720 7 + - 0 1 1 1 133 62 1 0 1 INTRA cancer_singleSample OV_6_T 32 84 84 365 52 399 0 4 24 21 0,150943 mild_oneoff OV_6_T;chainID=2 11 74454715 74454834 7 146183138 146183212 18500668 3 - - 0 0 1 1 147 38 1 0 1 INTER cancer_singleSample OV_7_T 110 252 13 80 68 328 -30 0 22 6 0 simple NA 11 75389817 75390082 11 75469432 75469696 22994669 24 + - 3 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 75640403 75640659 8 125509150 125509434 18517525 8 - - 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 76306359 76306531 11 76307102 76307348 22996748 4 + - 2 2 1 1 146 150 1 0 1 DEL cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 76555426 76555642 11 115274223 115274453 22997174 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T 601 1213 0 602 601 1213 1 8 23 21 0,266667 simple NA 11 76717081 76717174 7 148110445 148110531 18501164 3 - - 0 3 1 1 31 43 1 0 1 INTER cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 76896496 76896762 2 192500671 192500883 18273081 24 - + 1 1 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 76898152 76898376 2 192500665 192500865 18273083 17 - - 0 2 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 77122764 77122981 8 128422628 128422898 18517784 9 - - 5 3 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 77513957 77514165 11 77519935 77520172 22999379 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 611 702 0 613 89 704 2 NA NA NA NA simple NA 11 78212837 78213109 11 78223648 78223887 23001036 9 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 574 830 0 555 257 851 -19 11 19 28 0,318841 simple NA 11 78220163 78220371 11 78221682 78221918 23001049 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 21 595 592 1045 450 1066 3 9 26 28 0,25 simple NA 11 78229350 78229675 11 78230886 78231199 23001062 128 + - 1 1 1 1 149 117 1 0 1 DEL cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 78374643 78374864 11 118733126 118733375 23001429 8 - + 0 1 1 1 150 134 1 0 1 INTRA cancer_singleSample OV_6_T 25 171 171 374 146 384 0 7 21 21 0,25 mild_oneoff OV_6_T;chainID=2 11 79499105 79499359 11 80476429 80476678 23004535 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 507 599 20 507 92 599 0 NA NA NA NA simple NA 11 79541658 79541899 11 79551792 79552029 23004707 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 617 617 767 150 771 0 3 18 9 0,181818 simple NA 11 79747979 79748169 11 79769455 79769741 23005555 12 + - 3 2 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 79772925 79773148 11 80570256 80570495 23005646 7 + - 0 0 1 1 75 150 1 0 1 DEL cancer_singleSample GBM_9_T 612 1101 0 615 486 1126 3 9 10 8 0,5 simple NA 11 80081255 80081616 11 80499726 80500074 23006580 11 + - 2 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 81003605 81003798 11 81021294 81021473 23009997 4 + - 0 2 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 10 301 300 581 280 607 1 9 16 12 0,391304 simple NA 11 81068874 81069052 6 87238335 87238396 18424026 3 + + 0 0 1 1 89 65 1 0 1 INTER cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 81169268 81169527 11 81171296 81171546 23010342 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 608 1112 0 610 502 1152 2 4 20 20 0,166667 simple NA 11 81257572 81257771 11 81275383 81275556 23010620 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 51 681 8 54 43 681 3 15 14 16 0,5 simple NA 11 81631476 81631692 11 81632323 81632467 23012121 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 629 815 0 630 185 815 1 5 11 18 0,25641 simple NA 11 82058628 82058876 11 83199062 83199204 23013414 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T 660 1268 0 660 608 1268 0 2 1 3 0,5 simple NA 11 82805506 82805775 11 82835362 82835607 23015417 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 3 101 99 347 96 521 2 6 4 12 0,428571 simple NA 11 84716149 84716313 11 84718719 84718871 23021253 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 0 615 611 815 200 815 4 3 17 9 0,1875 simple NA 11 84838811 84839030 11 84845640 84845797 23021638 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 85200847 85201004 11 85244836 85245005 23022971 9 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 85355831 85356056 11 85370350 85370623 23023637 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 611 940 0 613 327 954 2 5 22 17 0,204082 simple NA 11 85502550 85502654 11 85504415 85504494 23023938 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 151 596 14 149 136 642 -2 7 12 70 0,145833 simple NA 11 85703951 85704161 11 85710903 85711156 23024448 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 620 825 0 621 204 845 1 5 28 23 0,163934 simple NA 11 85898806 85898988 11 85986876 85987009 23025051 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_16_T 0 260 260 454 194 724 0 14 21 16 0,430769 simple NA 11 86549761 86549998 11 98386014 98386231 23026744 9 - - 2 0 1 1 142 150 1 0 1 INTRA cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 87376266 87376409 11 87380861 87381038 23028948 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 673 670 867 194 875 3 6 13 21 0,26087 simple NA 11 87885902 87886092 2 176628065 176628204 18276059 3 - + 1 0 1 1 150 62 1 0 1 INTER cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 88154366 88154509 11 89036612 89036755 23031642 5 + - 0 1 1 1 150 88 1 0 1 DEL cancer_singleSample BRCA_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 88235412 88235571 11 88236794 88236964 23031891 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_12_T 525 771 40 523 247 775 -2 7 1 18 0,424242 simple NA 11 88492690 88492942 11 88497332 88497586 23032966 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 11 601 600 849 248 852 1 9 22 24 0,28125 simple NA 11 89110448 89110693 11 133114832 133115086 23034826 10 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 451 1071 26 454 425 1071 3 5 45 13 0,147059 simple NA 11 89333759 89333976 11 98820710 98820927 23035603 6 - - 0 0 1 1 116 150 1 0 1 INTRA cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 89548269 89548417 11 89759512 89759787 23036498 4 - + 1 0 1 1 150 35 1 0 1 DUP cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 89966585 89966797 11 91560473 91560657 23038183 5 - + 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 90840010 90840209 11 91118984 91119253 23040940 10 - + 1 0 1 1 150 146 1 0 1 DUP cancer_singleSample BRCA_6_T 614 695 0 614 81 741 0 15 20 13 0,47619 simple NA 11 91048666 91048900 11 91053443 91053688 23041765 5 + - 0 0 1 1 150 92 1 0 1 DEL cancer_singleSample LUAD_2_T 0 629 628 1076 447 1076 1 3 12 13 0,193548 simple NA 11 91250293 91250385 11 91250971 91251077 23042369 3 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 91250959 91251090 11 91263915 91264041 23042371 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_6_T 66 351 351 934 285 934 0 1 8 1 0,181818 simple NA 11 91670239 91670373 11 93274578 93274705 23044069 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 91670253 91670381 3 163504546 163504669 18323781 4 + + 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_11_T 74 221 249 596 148 602 -28 12 29 18 0,338028 simple NA 11 93161688 93161798 12 127344678 127344802 23080218 3 + + 0 0 1 1 120 150 1 0 1 INTER cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 93380503 93380720 11 98021781 98022022 23049169 19 + - 0 0 1 1 147 139 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 94801949 94802170 11 94804201 94804400 23053101 14 - + 0 0 1 1 134 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 95098376 95098510 11 95103437 95103678 23053909 4 + - 0 0 1 1 150 146 1 0 1 DEL cancer_singleSample OV_10_T 150 540 46 149 104 540 -1 15 12 17 0,508475 simple NA 11 95828393 95828552 11 95854372 95854559 23056417 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 123 309 1 125 122 357 2 7 19 18 0,27451 simple NA 11 96048330 96048532 11 96091573 96091785 23056931 4 + - 2 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 33 374 370 670 296 720 4 8 20 19 0,290909 simple NA 11 97216358 97216598 11 97219507 97219710 23060319 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 12 337 327 662 315 667 10 6 23 14 0,244898 simple NA 11 99338032 99338198 11 99367519 99367704 23066605 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 100202501 100202586 11 101923874 101924153 22721899 4 - - 1 0 1 1 118 76 1 0 1 INTRA cancer_singleSample OV_3_T 91 175 174 528 83 558 1 7 10 62 0,162791 simple NA 11 101754045 101754179 11 120234515 120234732 22727704 6 - - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_6_T 0 567 566 643 76 739 1 6 19 13 0,272727 simple NA 11 101894210 101894431 11 101913202 101913424 22728047 4 + - 3 0 1 1 120 150 1 0 1 DEL cancer_singleSample OV_5_T 0 51 62 675 52 675 -11 11 11 14 0,468085 simple NA 11 102256500 102256735 11 102508476 102508709 22728801 17 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 0 609 609 791 182 791 0 25 33 22 0,47619 simple NA 11 103746874 103747161 11 103767756 103768010 22733143 13 - + 0 0 1 1 145 150 1 0 1 DUP cancer_singleSample LUAD_3_T 0 114 107 709 107 709 7 9 15 22 0,327273 simple NA 11 104723377 104723619 11 104729160 104729373 22736403 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 37 157 159 765 121 765 -2 4 9 8 0,32 simple NA 11 106230622 106230800 11 106232221 106232449 22741196 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T 402 602 58 404 198 602 2 6 22 11 0,266667 simple NA 11 106435520 106436045 11 106446881 106447664 22741912 3 - - 0 0 1 1 150 129 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 107085992 107086190 11 107093848 107093959 22744055 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 604 873 0 606 267 881 2 9 13 8 0,461538 simple NA 11 108044648 108044824 11 108297442 108297564 22746346 6 + - 0 0 1 1 150 129 1 0 1 DEL cancer_singleSample READ_2_T 198 815 68 201 130 815 3 13 17 14 0,45614 simple NA 11 108296544 108296693 11 108297429 108297563 22746814 4 - + 0 0 1 1 140 108 1 0 1 DUP cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 110515873 110516094 11 123074114 123074374 22753297 13 + - 0 1 1 1 140 150 1 0 1 INTRA cancer_singleSample OV_6_T 418 546 1 419 127 546 1 8 15 23 0,296296 mild_oneoff OV_6_T;chainID=1 11 110516228 110516417 11 110517765 110517955 22753299 3 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_6_T;chainID=1 11 111918615 111918862 11 111956541 111956823 22757243 7 - + 0 0 1 1 135 150 1 0 1 DUP cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 112214340 112214564 11 112237165 112237373 22757897 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 547 624 0 547 77 669 0 8 25 15 0,285714 simple NA 11 112790181 112790483 11 112795805 112796090 22759700 13 + - 0 0 1 1 150 93 1 0 1 DEL cancer_singleSample LUSC_13_T 611 670 0 604 60 670 -7 NA NA NA NA simple NA 11 113704149 113704261 11 113711336 113711454 22761735 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 114359691 114359853 3 153631117 153631214 18286136 4 - - 0 0 1 1 121 150 1 0 1 INTER cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 115670617 115670805 11 116830900 116831090 22766281 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_6_T 0 606 605 746 140 746 1 4 16 6 0,266667 simple NA 11 116681303 116681437 11 116683172 116683323 22768355 4 + - 3 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 423 558 33 319 136 565 -104 1 1 0 0,666667 simple NA 11 117850728 117850905 11 118855246 118855494 22770190 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 117992505 117992824 11 117993894 117994113 22770378 4 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 118847049 118847319 11 118867512 118867717 22771870 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 593 795 1 596 199 801 3 6 3 7 0,545455 simple NA 11 119832639 119832916 11 121965529 121965786 22773293 23 - + 0 0 1 1 150 144 1 0 1 INTRA cancer_singleSample OV_10_T 59 235 234 627 175 650 1 3 15 7 0,214286 simple NA 11 120407114 120407348 11 120408875 120409080 22774101 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 606 937 0 608 329 937 2 5 5 8 0,434783 simple NA 11 120878899 120879067 11 121551446 121551629 22774952 12 - + 0 0 1 1 143 150 1 0 1 DUP cancer_singleSample OV_10_T 118 156 25 118 38 200 0 NA NA NA NA simple NA 11 120963683 120963948 11 121257014 121257278 22775179 18 - + 0 2 1 1 150 149 1 0 1 DUP cancer_singleSample OV_5_T 21 467 465 1065 444 1065 2 7 28 14 0,25 simple NA 11 121806203 121806470 11 121807391 121807650 22776988 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 376 596 249 375 127 649 -1 8 4 6 0,615385 simple NA 11 121811669 121811849 3 177644408 177644628 18286780 3 - + 3 0 1 1 100 52 1 0 1 INTER cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 121835397 121835657 11 121836112 121836375 22777063 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 607 606 781 174 789 1 8 5 5 0,615385 simple NA 11 122711536 122711694 11 129881437 129881579 22779163 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 124386498 124386682 11 124393501 124393684 22783363 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 624 627 1263 625 1263 -3 4 2 0 0,8 simple NA 11 124762012 124762278 11 124768237 124768478 22783989 4 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 126012507 126012662 11 126831600 126831779 22786495 3 - + 0 0 1 1 90 150 1 0 1 DUP cancer_singleSample COAD_1_T 652 1265 0 655 610 1265 3 4 13 16 0,216216 simple NA 11 126188729 126188856 11 126496632 126496837 22786757 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 619 775 0 612 157 782 -7 5 12 14 0,277778 simple NA 11 126922064 126922246 11 126925385 126925588 22788058 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 126957833 126958137 11 126959393 126959717 22788142 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 10 486 486 943 457 953 0 11 9 12 0,511628 simple NA 11 128539441 128539728 3 156662138 156662428 18287354 12 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T 363 806 61 368 302 852 5 9 20 22 0,3 simple NA 11 128680398 128680573 11 128685449 128685597 22792708 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 616 862 0 616 246 862 0 6 17 30 0,20339 simple NA 11 129987869 129988096 3 182812700 182812941 18287469 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_6_T;chainID=1 11 130098564 130098805 11 130104251 130104436 22795274 5 - + 4 2 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 11 130134163 130134291 8 135082499 135082636 18507407 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_3_T;chainID=5 11 130134394 130134576 8 135082732 135082930 18507408 6 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_3_T;chainID=5 11 130158419 130158638 11 130176859 130177035 22795412 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 106 507 515 584 70 587 -8 NA NA NA NA simple NA 11 131538279 131538393 11 131539720 131539995 22798509 12 + - 0 0 1 1 134 145 1 0 1 DEL cancer_singleSample OV_10_T 43 157 154 599 111 608 3 15 1 10 0,731707 simple NA 11 131603981 131604170 3 182964962 182965423 18287674 11 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_6_T 0 639 639 800 161 800 0 2 17 17 0,105263 extreme_stepwise LUSC_6_T;chainID=1 11 131756092 131756374 11 134236417 134236711 22799123 7 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 613 887 0 614 273 890 1 4 23 20 0,156863 simple NA 11 131767604 131767820 11 131778610 131778831 22799137 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 615 620 1239 616 1239 -5 14 12 7 0,595745 simple NA 11 131876664 131876897 11 131877248 131877458 22799430 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T 607 1217 0 607 607 1217 0 5 11 14 0,285714 simple NA 11 132704640 132704874 11 132705414 132705510 22801727 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 296 364 15 297 67 383 1 NA NA NA NA simple NA 11 133211649 133211828 11 133227282 133227468 22802785 3 - + 1 0 1 1 117 150 1 0 1 DUP cancer_singleSample LUSC_13_T 52 642 641 857 215 871 1 0 14 20 0 simple NA 11 133467705 133467891 11 133476470 133476614 22803376 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 8 341 340 933 332 933 1 6 21 15 0,25 simple NA 12 517612 517845 9 134518179 134518347 18802266 3 - + 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 587 1192 38 588 549 1192 1 2 19 9 0,125 simple NA 12 595782 595883 12 1459734 1459960 23613895 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 1156789 1156990 12 1338600 1338868 23210046 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 615 836 6 618 218 1037 3 6 26 24 0,193548 simple NA 12 2516339 2516490 12 2516884 2517020 23393820 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_12_T 549 816 0 652 164 852 103 9 13 1 0,5625 simple NA 12 2554811 2555020 12 2556460 2556704 23396477 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T 0 610 608 1147 537 1148 2 6 18 20 0,24 simple NA 12 2821819 2822038 12 2852365 2852567 23415515 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 443 555 12 435 113 556 -8 6 19 0 0,387097 simple NA 12 3607902 3608052 13 75706172 75706381 23951188 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 656 1088 0 656 432 1088 0 2 17 27 0,0833333 mild_stepwise LUAD_5_T;chainID=3 12 3607924 3608152 17 49885672 49885904 23970155 8 + + 0 0 1 1 150 139 1 0 1 INTER cancer_singleSample LUAD_5_T 499 688 32 499 189 711 0 3 5 21 0,1875 mild_stepwise LUAD_5_T;chainID=3 12 3608210 3608339 14 32625942 32626198 23954692 10 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 624 788 0 627 161 812 3 14 4 34 0,424242 mild_stepwise LUAD_5_T;chainID=3 12 3714401 3714628 18 19145542 19145805 23974376 7 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T 412 461 11 414 47 527 2 7 12 12 0,368421 simple NA 12 3791178 3791413 17 26117203 26117388 23970193 14 - - 0 0 1 1 148 105 1 0 1 INTER cancer_singleSample OV_10_T 290 701 21 291 269 723 1 8 21 8 0,355556 simple NA 12 3793271 3793443 17 26122714 26122933 23970194 12 + + 0 0 1 1 148 142 1 0 1 INTER cancer_singleSample OV_10_T 6 371 367 509 138 509 4 8 12 9 0,432432 simple NA 12 4326724 4326927 7 68186986 68187063 18744834 3 + + 0 0 1 1 150 107 1 0 1 INTER cancer_singleSample GBM_7_T 238 468 27 313 155 473 75 1 7 5 0,142857 simple NA 12 5362374 5362587 12 5366340 5366607 23581123 14 - + 0 0 1 1 150 136 1 0 1 DUP cancer_singleSample BRCA_2_T 260 445 20 261 184 449 1 4 29 18 0,145455 simple NA 12 6053964 6054203 12 10426301 10426532 23621828 11 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 6187804 6187954 12 6194455 6194654 23632876 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 6222171 6222357 12 6441368 6441530 23636111 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 3 197 200 525 195 533 -3 8 15 13 0,363636 simple NA 12 6346275 6346544 12 6361274 6361588 23643908 7 - + 1 0 1 1 125 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_13_T;chainID=3 12 6369549 6369683 12 6396937 6397102 23646156 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_13_T;chainID=3 12 6494543 6494652 12 6498024 6498215 23654551 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_13_T;chainID=3 12 8747811 8748007 2 29696928 29697151 18610028 3 + - 0 1 1 1 127 150 1 0 1 INTER cancer_singleSample BRCA_2_T 536 695 0 539 156 769 3 3 18 10 0,176471 simple NA 12 9867174 9867364 12 9876784 9876945 23939023 6 - + 0 1 1 1 144 150 1 0 1 DUP cancer_singleSample BRCA_2_T 1 564 563 748 184 812 1 13 35 23 0,309524 simple NA 12 10170617 10170761 5 138048737 138048910 18660818 7 - + 0 0 1 1 150 146 1 0 1 INTER cancer_singleSample OV_10_T 36 273 269 496 223 511 4 11 9 14 0,488889 simple NA 12 10170667 10170786 5 138039771 138039957 18660819 5 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_10_T 47 223 223 422 176 452 0 4 13 14 0,228571 simple NA 12 10657891 10658097 12 10662278 10662502 23153659 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 28 398 397 1006 369 1008 1 5 27 31 0,147059 simple NA 12 11406198 11406493 17 57923202 57923446 23968271 13 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 11527144 11527243 12 11566268 11566501 23206326 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 11751529 11751646 12 11876583 11876756 23221763 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 359 704 61 366 298 709 7 0 39 39 0 simple NA 12 11853314 11853448 12 12203184 12203297 23227763 4 - + 0 0 1 1 150 118 1 0 1 DUP cancer_singleSample BRCA_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 12025735 12025956 12 12264915 12265160 23239976 9 + - 0 0 1 1 150 139 1 0 1 DEL cancer_singleSample BRCA_4_T 28 173 172 658 144 658 1 12 8 74 0,226415 simple NA 12 13265790 13266086 12 25552414 25552716 23299401 7 + - 0 0 1 1 148 131 1 0 1 INTRA cancer_singleSample LUAD_3_T 0 584 584 795 211 798 0 2 18 16 0,105263 simple NA 12 13407941 13408175 12 59256638 59256826 23303262 10 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 568 705 15 569 136 705 1 3 9 28 0,139535 simple NA 12 13587373 13587627 12 13590069 13590311 23304723 16 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 29 557 571 874 304 915 -14 22 25 22 0,483516 simple NA 12 13881081 13881338 12 13892113 13892330 23307730 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 14179878 14180016 12 14183710 14183969 23310161 8 - + 1 0 1 1 146 150 1 0 1 DUP cancer_singleSample OV_4_T 594 804 0 595 209 805 1 15 13 4 0,638298 simple NA 12 14944276 14944535 12 15043443 15043714 23315151 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 14949766 14949982 12 15172165 15172386 23315182 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 15279425 15279597 2 45517982 45518149 18572493 7 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 19 494 495 690 196 1165 -1 4 30 12 0,16 simple NA 12 15304523 15304639 12 15315851 15315985 23318104 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 6 206 210 455 201 455 -4 4 25 27 0,133333 simple NA 12 16291348 16291489 8 55390543 55390796 18761500 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 24 256 257 579 233 590 -1 7 14 5 0,424242 simple NA 12 16889304 16889668 12 16890562 16890902 23331058 8 + - 1 1 1 1 135 147 1 0 1 DEL cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 17236397 17236654 12 17238422 17238690 23334469 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 17275022 17275354 12 17454495 17454800 23334953 13 + - 1 2 1 1 150 147 1 0 1 DEL cancer_singleSample GBM_6_T 0 453 453 1068 453 1068 0 5 13 12 0,285714 simple NA 12 19298292 19298574 12 19415731 19416025 23352506 30 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 19844255 19844477 12 19878514 19878764 23355704 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_3_T 19 437 435 552 115 586 2 5 8 23 0,243902 simple NA 12 20209798 20209968 6 78858708 78858881 18694385 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_8_T 10 361 359 967 349 967 2 4 14 6 0,285714 simple NA 12 21008207 21008445 12 21009600 21009868 23363385 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 21297064 21297215 20 53350692 53350913 23979470 5 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 21330229 21330485 12 21539894 21540152 23366492 18 - + 0 1 1 1 150 119 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 21331021 21331271 12 21557041 21557294 23366501 16 + + 1 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T 350 485 26 350 135 485 0 7 20 23 0,245614 simple NA 12 21558132 21558320 9 130310735 130310956 18788071 6 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 22 214 213 704 191 704 1 6 16 8 0,333333 simple NA 12 21562534 21562742 9 130316208 130316440 18788072 8 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 84 196 200 611 113 611 -4 12 15 17 0,428571 simple NA 12 21738679 21738883 12 21743663 21743908 23369238 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 502 922 198 504 304 923 2 7 31 33 0,179487 simple NA 12 22226844 22227017 12 22270097 22270308 23373006 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 33 403 401 883 368 907 2 3 7 6 0,315789 simple NA 12 22832165 22832382 12 22933787 22933927 23376814 4 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_11_T 0 663 671 752 82 781 -8 6 15 14 0,292683 simple NA 12 22945181 22945426 12 80564796 80565150 23377695 14 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 595 642 15 597 45 642 2 NA NA NA NA simple NA 12 23947695 23947857 12 23955731 23955900 23385794 6 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_1_T 613 916 0 614 302 920 1 2 10 10 0,166667 simple NA 12 24100723 24100866 12 24101238 24101387 23386855 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_12_T 0 293 291 495 202 514 2 17 28 30 0,369565 simple NA 12 24279501 24279690 12 24282581 24282781 23387938 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 287 770 60 289 227 839 2 4 18 25 0,156863 simple NA 12 25113772 25113952 12 79488413 79488678 23393478 10 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 25718373 25718423 12 25749632 25749867 23397541 3 + + 0 0 1 1 118 119 1 0 1 INV cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 26099805 26099940 12 28248156 28248290 23401089 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 26620103 26620242 12 26901268 26901393 23404967 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 26792090 26792272 12 26794264 26794539 23406186 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 433 811 48 435 376 844 2 2 16 27 0,0851064 simple NA 12 27239635 27239883 12 27249333 27249589 23408809 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 392 830 1 393 391 859 1 6 30 17 0,20339 simple NA 12 27309931 27310049 12 27334290 27334558 23409497 5 - + 0 0 1 1 150 126 1 0 1 DUP cancer_singleSample OV_10_T 266 526 0 266 260 557 0 2 3 12 0,210526 simple NA 12 27532143 27532410 12 27534595 27534858 23411045 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 43 544 541 709 165 750 3 5 10 19 0,25641 simple NA 12 27880228 27880387 12 74669039 74669163 23413379 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 27949327 27949470 2 215771542 215771683 18576482 3 + - 0 0 1 1 150 69 1 0 1 INTER cancer_singleSample GBM_16_T 54 261 261 575 207 633 0 7 8 8 0,466667 simple NA 12 28268621 28268725 12 28276187 28276331 23416133 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 77 722 24 78 53 722 1 8 5 8 0,551724 simple NA 12 29045892 29046173 12 29047889 29048166 23423694 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 605 1032 0 605 427 1081 0 12 16 15 0,436364 simple NA 12 29129100 29129265 6 91225249 91225424 18695685 5 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_8_T 114 157 164 571 44 620 -7 3 14 3 0,26087 simple NA 12 29558978 29559156 12 29595371 29595554 23427465 6 + + 1 0 1 1 150 101 1 0 1 INV cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 29795186 29795303 12 29797110 29797229 23429194 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 621 620 739 118 739 1 3 17 0 0,26087 simple NA 12 30009750 30009998 5 57535147 57535324 18667599 6 - - 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample OV_9_T 481 1162 26 482 455 1162 1 3 13 10 0,206897 simple NA 12 30809239 30809447 16 83199682 83199918 23964233 6 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 19 96 94 372 75 409 2 5 8 21 0,25641 simple NA 12 30867431 30867639 12 31849406 31849632 23437918 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 31117098 31117292 12 31120681 31120838 23439489 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 0 246 245 902 245 902 1 4 13 40 0,131148 simple NA 12 31569997 31570209 12 31585259 31585431 23441705 7 - + 0 0 1 1 125 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 31765486 31765728 12 46062949 46063503 23443057 17 + - 0 0 1 1 142 150 1 0 1 INTRA cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_6_T;chainID=2 12 31882109 31882391 17 58778931 58779135 23969921 13 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 232 350 27 232 118 386 0 12 14 16 0,444444 simple NA 12 31929150 31929351 12 71050764 71051001 23443936 12 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 637 733 0 640 93 737 3 NA NA NA NA mild_oneoff LUSC_6_T;chainID=2 12 31929160 31929268 12 71795623 71795796 23443937 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 82 286 286 425 139 856 0 21 28 20 0,466667 mild_oneoff LUSC_6_T;chainID=2 12 32002575 32002715 12 32062523 32063152 23444302 3 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 32030985 32031122 12 32033543 32033663 23444548 3 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 18 274 273 902 255 902 1 4 25 5 0,210526 simple NA 12 32525322 32525573 3 185179499 185179601 18621377 3 + + 0 3 1 1 150 49 1 0 1 INTER cancer_singleSample BRCA_3_T 8 273 189 470 181 483 84 0 22 37 0 simple NA 12 32686095 32686328 12 32687195 32687435 23448331 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 0 577 576 763 186 807 1 10 6 10 0,555556 simple NA 12 33799928 33800099 12 91408028 91408236 23457214 6 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 151 366 24 152 127 521 1 7 13 21 0,291667 simple NA 12 34275235 34275500 12 34333078 34333322 23461593 15 + - 0 0 1 1 145 111 1 0 1 DEL cancer_singleSample LUSC_3_T 617 771 0 616 155 841 -1 10 20 18 0,344828 simple NA 12 38457460 38457642 12 46440513 46440658 23483691 7 + + 0 0 1 1 146 150 1 0 1 INTRA cancer_singleSample OV_3_T 381 987 16 384 365 987 3 4 9 15 0,25 mild_oneoff OV_3_T;chainID=1 12 38788130 38788328 12 38789935 38790095 23486511 5 - + 2 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 0 650 647 799 149 812 3 6 16 11 0,307692 simple NA 12 38910115 38910310 12 38940106 38940296 23487888 3 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T 444 1014 78 444 366 1014 0 2 46 45 0,0421053 simple NA 12 39016836 39016952 12 62413362 62413505 23489023 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 39251184 39251326 12 39261566 39261740 23490589 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 39793511 39793783 12 131550542 131550783 23493965 9 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 0 602 599 1200 598 1200 3 5 19 7 0,277778 simple NA 12 41701378 41701540 12 41703364 41703496 23510687 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 1 197 206 680 197 698 -9 7 12 15 0,341463 simple NA 12 42356826 42357071 15 60752293 60752571 23958963 4 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_5_T 482 787 0 466 306 793 -16 4 47 23 0,102564 simple NA 12 42591338 42591464 12 42768553 42768766 23517833 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 199 295 293 629 94 633 2 14 25 19 0,388889 simple NA 12 42743517 42743642 6 67477811 67477933 18703264 4 - + 0 0 1 1 47 150 1 0 1 INTER cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_5_T;chainID=2 12 42743582 42743786 6 66020152 66020370 18703265 14 + + 0 0 1 1 103 88 1 0 1 INTER cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_5_T;chainID=2 12 43385200 43385369 12 43442418 43442601 23522861 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 44517686 44517894 12 78583198 78583511 23530286 10 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 410 849 62 411 348 863 1 8 21 17 0,296296 simple NA 12 45198059 45198304 12 47845314 47845547 23536240 18 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 20 347 347 679 327 701 0 17 20 27 0,419753 simple NA 12 46028805 46029069 12 46061787 46062063 23542073 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 0 597 594 890 293 912 3 9 25 14 0,315789 simple NA 12 46081307 46081591 12 89514608 89514883 23542427 22 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 15 385 379 1007 364 1007 6 20 24 20 0,47619 mild_oneoff LUSC_6_T;chainID=2 12 46172944 46173174 7 76319601 76319783 18745585 7 + + 0 0 1 1 150 76 1 0 1 INTER cancer_singleSample BRCA_1_T 11 49 48 395 37 415 1 23 15 29 0,511111 simple NA 12 46494024 46494252 12 46564597 46564749 23544875 4 - - 1 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 46496011 46496254 12 48098498 48098709 23544879 8 - - 0 0 1 1 138 150 1 0 1 INTRA cancer_singleSample OV_3_T 198 565 566 601 36 602 -1 NA NA NA NA mild_oneoff OV_3_T;chainID=1 12 46520269 46520507 12 47910239 47910466 23545156 17 + + 0 0 1 1 149 96 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_3_T;chainID=1 12 47062457 47062652 12 47084757 47084921 23549708 14 + + 1 0 1 1 142 150 1 0 1 INV cancer_singleSample OV_6_T 578 697 0 582 115 714 4 4 26 7 0,195122 simple NA 12 47510776 47510885 12 131551043 131551305 23553335 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 0 608 608 1238 608 1238 0 1 14 7 0,0869565 simple NA 12 47842369 47842471 12 47919683 47919776 23555725 4 - + 0 0 1 1 36 116 1 0 1 DUP cancer_singleSample OV_3_T 628 827 1 630 197 829 2 10 14 17 0,392157 mild_oneoff OV_3_T;chainID=1 12 47846716 47847037 12 82128630 82128883 23555773 10 + - 2 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 0 614 613 697 83 716 1 4 16 12 0,222222 simple NA 12 47993076 47993331 12 48023731 48023973 23556878 14 + - 0 0 1 1 150 125 1 0 1 DEL cancer_singleSample LUSC_13_T 614 726 0 613 113 779 -1 3 26 13 0,133333 simple NA 12 48245519 48245700 12 48277153 48277384 23557886 16 - + 0 0 1 1 145 150 1 0 1 DUP cancer_singleSample OV_3_T 524 710 0 530 180 710 6 5 22 12 0,227273 simple NA 12 48729693 48729844 9 121231330 121231466 18801878 4 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 608 1137 0 609 528 1137 1 10 16 17 0,377358 simple NA 12 49466775 49466906 12 49481237 49481350 23563530 3 + - 0 2 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_10_T 31 120 77 532 46 534 43 1 11 21 0,0588235 simple NA 12 50295601 50295747 12 54954637 54954861 23567127 4 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 50493320 50493469 12 50503093 50503272 23567844 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 50818506 50818670 12 50820615 50820799 23569755 5 + - 0 2 1 1 150 124 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 51528375 51528629 12 51529389 51529667 23573434 15 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 268 1198 14 419 254 1230 151 5 15 22 0,212766 simple NA 12 51717442 51717695 12 51755779 51755980 23574272 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 51966909 51967164 12 55669490 55669735 23575422 4 - + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T 0 611 609 874 263 889 2 2 20 8 0,125 simple NA 12 52388961 52389199 12 52410816 52411095 23577343 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 53381081 53381250 12 53383588 53383807 23580430 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 53549630 53549876 12 53552594 53552828 23580997 15 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 380 858 232 382 148 876 2 7 10 22 0,304348 simple NA 12 54121954 54122259 2 115440191 115440507 18593716 54 - + 2 1 1 1 149 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 54574408 54574582 12 54586394 54586591 23585355 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T 343 1017 30 347 313 1017 4 11 26 32 0,275 simple NA 12 54709559 54709719 12 54717122 54717363 23585853 8 + - 0 0 1 1 82 150 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 54768796 54769027 12 103745328 103745569 23586107 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_18_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_18_T;chainID=1 12 54783863 54784056 12 132570318 132570557 23586136 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_18_T 634 1250 0 634 616 1252 0 3 12 8 0,230769 mild_oneoff GBM_18_T;chainID=1 12 54903438 54903628 12 54983527 54983789 23586614 4 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 606 838 0 609 229 842 3 1 25 18 0,0444444 simple NA 12 55225866 55226142 12 55236106 55236306 23588848 5 + - 3 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 0 604 601 1208 601 1208 3 2 7 4 0,266667 simple NA 12 55730569 55730767 12 86152760 86152984 23592430 4 - - 0 2 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 0 610 608 946 336 946 2 4 14 12 0,235294 simple NA 12 56520411 56520662 12 86101221 86101496 23596465 10 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T 0 605 604 772 167 809 1 12 17 8 0,489796 simple NA 12 57197284 57197507 12 103771955 103772195 23599511 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_18_T 629 949 0 632 317 986 3 8 12 11 0,410256 mild_oneoff GBM_18_T;chainID=1 12 57202918 57203089 12 103748623 103748851 23599519 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_18_T 610 882 0 611 271 885 1 1 6 15 0,0869565 mild_oneoff GBM_18_T;chainID=1 12 57486349 57486629 12 59405814 59406096 23601032 75 - - 0 0 1 1 150 149 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 57498712 57498941 12 69263204 69263449 23601109 15 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 57508465 57508556 12 57787942 57788062 23601168 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 57508734 57508928 12 61699429 61699649 23601171 13 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 57511354 57511565 12 61698463 61698669 23601200 14 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T 605 838 0 605 233 838 0 12 17 12 0,45283 extreme_stepwise GBM_19_T;chainID=1 12 57514313 57514509 12 58029487 58029686 23601212 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 57533766 57533914 12 57551662 57551797 23601289 12 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_3_T 26 387 385 672 285 714 2 6 14 17 0,27907 simple NA 12 57706909 57707159 12 59642194 59642440 23601949 32 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T 82 618 31 87 51 618 5 37 21 20 0,643478 extreme_stepwise GBM_19_T;chainID=1 12 57738655 57738837 12 62232651 62232830 23602169 6 - - 1 0 1 1 133 150 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 57754000 57754226 12 69607858 69608102 23602271 48 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 57787508 57787701 12 58165273 58165492 23602416 42 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 57789021 57789281 12 58201580 58201841 23602419 22 + + 1 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 57792115 57792314 17 66321662 66321806 23971195 33 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 57839626 57839867 12 58163284 58163553 23602650 66 - + 0 0 1 1 144 150 1 0 1 DUP cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 57870347 57870501 12 61319903 61320036 23602737 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 57983549 57983723 12 60757112 60757329 23603064 7 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T 0 213 209 264 51 526 4 10 22 29 0,28169 extreme_stepwise GBM_19_T;chainID=1 12 58022594 58022829 12 62209166 62209419 23603139 23 - - 0 0 1 1 150 115 1 0 1 INTRA cancer_singleSample GBM_19_T 0 297 294 631 294 631 3 7 11 24 0,285714 extreme_stepwise GBM_19_T;chainID=1 12 58029467 58029645 12 61697240 61697422 23603153 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 58038280 58038399 12 60671347 60671457 23603187 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 58039100 58039306 12 61696737 61696921 23603194 24 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T 309 475 0 311 164 476 2 47 34 17 0,648276 extreme_stepwise GBM_19_T;chainID=1 12 58039854 58040113 12 58164176 58164391 23603197 65 - + 0 0 1 1 138 150 1 0 1 DUP cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 58049524 58049812 12 58545259 58545548 23603212 16 - + 2 2 1 1 139 150 1 0 1 DUP cancer_singleSample OV_5_T 3 588 586 833 245 862 2 7 2 13 0,482759 simple NA 12 58063083 58063192 12 60045051 60045175 23603244 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 58064383 58064587 12 62589242 62589474 23603247 39 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 58078701 58078871 12 58918735 58918943 23603357 9 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 73 328 319 926 246 926 9 4 23 14 0,177778 simple NA 12 58138193 58138438 12 64521941 64522115 23603643 8 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 58143411 58143696 12 59416148 59416348 23603662 81 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 58165056 58165330 12 60060806 60061069 23603699 53 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T 0 374 371 678 304 685 3 49 31 35 0,597561 extreme_stepwise GBM_19_T;chainID=1 12 58185381 58185547 12 58346697 58346853 23603805 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 58189714 58189913 12 59272605 59272823 23603832 20 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 58218664 58218892 12 62901456 62901674 23603976 16 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T 139 446 7 116 110 446 -23 10 19 32 0,28169 extreme_stepwise GBM_19_T;chainID=1 12 58541999 58542204 12 62523861 62524065 23605858 9 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T 615 1224 0 617 607 1224 2 6 13 16 0,292683 extreme_stepwise GBM_19_T;chainID=1 12 58575974 58576272 17 66321662 66321806 23971209 30 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 58599562 58599739 12 60903946 60904122 23606324 5 + + 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 341 1002 10 342 331 1002 1 6 9 7 0,428571 extreme_stepwise GBM_3_T;chainID=2 12 58600850 58601111 12 124420872 124421114 23606343 13 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 595 1007 0 595 412 1017 0 2 6 8 0,222222 extreme_stepwise GBM_3_T;chainID=2 12 58808290 58808499 12 60022272 60022450 23607961 7 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T 0 642 642 741 99 938 0 9 1 33 0,346154 extreme_stepwise GBM_19_T;chainID=1 12 59025818 59026116 12 59027949 59028216 23609899 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 443 753 1 445 308 764 2 8 25 18 0,271186 simple NA 12 59248721 59248959 12 59391586 59391805 23611805 30 - - 0 0 1 1 118 150 1 0 1 INV cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 59254731 59255007 12 59265552 59265808 23611827 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 202 545 19 194 176 565 -8 4 10 22 0,2 simple NA 12 59311359 59311574 12 59313341 59313479 23612205 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_3_T 198 882 2 203 196 882 5 6 4 12 0,428571 simple NA 12 59456296 59456508 12 60515184 60515453 23613135 25 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T 332 953 274 337 58 953 5 16 12 24 0,470588 extreme_stepwise GBM_19_T;chainID=1 12 59592449 59592594 12 80171991 80172152 23613989 4 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 612 946 0 612 334 959 0 11 15 1 0,578947 simple NA 12 59877731 59877926 12 61345892 61346103 23616688 13 - - 0 0 1 1 150 45 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 60026172 60026405 12 60131642 60131869 23617771 7 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_5_T 0 631 631 804 173 830 0 4 10 12 0,266667 simple NA 12 60044844 60045065 12 61200232 61200432 23617946 67 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T 0 608 606 814 206 840 2 35 38 61 0,414201 extreme_stepwise GBM_19_T;chainID=1 12 60073188 60073451 12 80228529 80228818 23618073 11 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 0 611 610 1241 610 1241 1 6 6 12 0,4 simple NA 12 60162037 60162279 12 62917881 62918099 23618649 21 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T 917 1009 714 916 93 1094 -1 18 23 24 0,433735 extreme_stepwise GBM_19_T;chainID=1 12 60317481 60317603 12 77202966 77203145 23619981 3 - - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 634 1032 0 634 398 1046 0 2 15 8 0,148148 simple NA 12 60416781 60416989 12 61618022 61618229 23620980 11 - - 0 0 1 1 150 67 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 60426420 60426638 12 62316336 62316590 23621076 13 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T 0 312 318 729 313 777 -6 15 35 37 0,294118 extreme_stepwise GBM_19_T;chainID=1 12 60438351 60438557 12 71021159 71021338 23621146 7 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 60552611 60552736 12 62517158 62517297 23621945 3 - - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 60655489 60655799 12 78409534 78409798 23622704 8 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 1 634 634 727 93 777 0 6 3 15 0,4 simple NA 12 60682206 60682326 X 105346475 105346698 5076024 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 446 1060 89 449 357 1060 3 4 9 19 0,222222 simple NA 12 60685442 60685706 X 105346576 105346806 5076025 7 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 427 1082 69 429 358 1090 2 5 10 11 0,322581 simple NA 12 60839767 60840048 6 66118659 66118900 18705995 7 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_5_T;chainID=2 12 60905498 60905739 12 60913307 60913527 23624745 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_18_T 615 1226 0 615 611 1226 0 5 10 12 0,3125 simple NA 12 61125339 61125585 12 61838062 61838308 23626623 61 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_19_T 73 202 202 734 129 734 0 62 25 33 0,681319 extreme_stepwise GBM_19_T;chainID=1 12 61164980 61165098 12 62220546 62220679 23627157 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T 354 593 603 880 240 881 -10 23 53 36 0,340741 extreme_stepwise GBM_19_T;chainID=1 12 61174805 61174996 12 61657257 61657450 23627357 10 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 61175825 61176086 12 69693806 69694085 23627409 300 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 61183907 61184040 12 61213232 61213411 23627608 18 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 61211543 61211689 12 61213428 61213623 23628007 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 61270556 61270700 12 61294608 61294738 23628463 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 61306849 61307016 12 61308546 61308720 23628852 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 61320799 61321049 12 61369947 61370208 23629014 255 + + 0 0 1 1 150 149 1 0 1 INV cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 61321339 61321631 12 69611514 69611766 23629020 345 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 61336323 61336486 12 62626359 62626543 23629160 8 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T 45 180 228 818 136 818 -48 10 61 19 0,2 extreme_stepwise GBM_19_T;chainID=1 12 61343455 61343557 12 69473206 69473342 23629210 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 61531349 61531488 12 77501744 77502004 23630608 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 611 1229 0 612 611 1229 1 10 11 15 0,434783 simple NA 12 61559018 61559128 12 69393364 69393492 23630956 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T 50 139 185 341 90 528 -46 16 26 60 0,271186 extreme_stepwise GBM_19_T;chainID=1 12 61736297 61736510 12 61736801 61737016 23632096 4 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 61787033 61787264 12 61864156 61864391 23632369 17 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_19_T 60 140 138 614 78 614 2 10 28 24 0,277778 extreme_stepwise GBM_19_T;chainID=1 12 61900086 61900289 12 62615990 62616220 23633030 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 62062142 62062345 12 62064555 62064800 23634592 16 + - 0 1 1 1 150 137 1 0 1 DEL cancer_singleSample LUSC_8_T 0 340 338 862 338 881 2 6 24 30 0,181818 simple NA 12 62162551 62162694 12 62306322 62306433 23635639 3 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 62456456 62456753 12 65892777 65893137 23637791 41 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 607 854 0 611 243 854 4 18 14 6 0,642857 extreme_stepwise GBM_3_T;chainID=2 12 62550201 62550533 12 62560273 62560559 23638581 716 - - 0 0 1 1 149 149 1 0 1 INV cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 62552224 62552441 12 69831607 69831875 23638598 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 62587946 62588237 12 63200077 63200349 23638761 9 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_3_T 515 896 0 517 379 912 2 16 3 12 0,680851 extreme_stepwise GBM_3_T;chainID=2 12 62612766 62612983 12 82153184 82153313 23638898 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 640 1296 5 642 635 1296 2 1 7 2 0,181818 extreme_stepwise GBM_3_T;chainID=2 12 62614208 62614438 12 62963059 62963312 23638900 24 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 63099238 63099523 12 65596073 65596359 23641843 20 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 0 533 532 1128 532 1132 1 15 15 10 0,545455 extreme_stepwise GBM_3_T;chainID=2 12 64057469 64057708 7 102916140 102916218 18749177 3 + - 2 0 1 1 86 38 1 0 1 INTER cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 64521903 64522146 12 69939886 69940186 23651729 12 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 64575640 64575995 12 69136868 69137331 23652001 292 - - 0 0 1 1 149 132 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 64615283 64615496 12 69767402 69767621 23652578 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 65524259 65524570 12 69581132 69581462 23658293 496 - - 0 0 1 1 150 147 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 65554308 65554572 12 69669612 69669952 23658576 304 + + 0 0 1 1 144 149 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 65566685 65566883 12 68988668 68988874 23658600 9 + + 1 0 1 1 150 103 1 0 1 INTRA cancer_singleSample GBM_3_T 440 776 44 441 335 788 1 0 5 11 0 extreme_stepwise GBM_3_T;chainID=2 12 65578720 65579029 12 65892287 65892530 23658693 20 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_3_T 0 629 626 975 346 978 3 16 8 8 0,666667 extreme_stepwise GBM_3_T;chainID=2 12 65579404 65579581 12 66294219 66294505 23658701 11 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_3_T 0 611 610 830 219 863 1 16 2 16 0,64 extreme_stepwise GBM_3_T;chainID=2 12 65579734 65580021 12 69891884 69892166 23658705 9 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 65601161 65601531 12 69267633 69267970 23658836 895 - + 0 0 1 1 149 147 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 65633206 65633469 12 70044879 70045133 23658994 470 - + 0 0 1 1 149 149 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 65817029 65817216 12 65918874 65919068 23660069 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 66257621 66257782 12 71080276 71080482 23662984 5 - - 0 0 1 1 150 133 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 66286084 66286339 12 67227786 67227957 23663100 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_3_T 246 828 29 246 217 828 0 5 13 11 0,294118 extreme_stepwise GBM_3_T;chainID=2 12 66296552 66296833 12 71081798 71082100 23663146 18 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 632 1050 0 633 417 1052 1 21 9 4 0,763636 extreme_stepwise GBM_3_T;chainID=2 12 66328276 66328539 12 66340451 66340653 23663358 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 397 813 46 392 347 813 -5 5 25 35 0,142857 simple NA 12 66595841 66596102 12 67252318 67252540 23667926 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 66843179 66843437 12 66845034 66845279 23669079 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 6 516 516 696 180 703 0 5 22 7 0,25641 simple NA 12 67291639 67291891 12 67312575 67312861 23672561 7 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_8_T 475 790 13 477 313 802 2 10 48 47 0,173913 simple NA 12 67361606 67361818 12 67363097 67363246 23673028 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 67379061 67379314 12 68988465 68988655 23673204 13 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 525 736 6 527 209 736 2 15 11 7 0,625 extreme_stepwise GBM_3_T;chainID=2 12 67550990 67551263 12 67877738 67877977 23674373 7 + - 2 3 1 1 137 150 1 0 1 DEL cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 67586171 67586318 12 69189604 69189753 23674886 3 - + 1 4 1 1 150 114 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 67601117 67601325 12 68408414 68408594 23675064 9 + - 0 2 1 1 150 146 1 0 1 DEL cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 67601574 67601733 12 67790335 67790607 23675070 4 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 67620791 67621052 12 67782857 67783102 23675332 7 - - 0 0 1 1 99 150 1 0 1 INV cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 67630723 67630908 12 69513392 69513624 23675539 5 - - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 67633794 67634016 12 69218807 69218945 23675561 3 + + 2 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 67680661 67680816 12 69588085 69588293 23675824 3 - - 3 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 67690990 67691105 12 68774263 68774405 23675908 3 + + 2 2 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 67691290 67691413 12 68781029 68781261 23675913 3 - - 1 2 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 67705427 67705714 12 68076102 68076361 23676033 6 - - 3 2 1 1 129 150 1 0 1 INV cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 67730375 67730641 12 68771687 68771892 23676192 12 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 67739086 67739350 12 69267882 69268144 23676216 21 - - 1 2 1 1 150 143 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 67764125 67764364 12 69291025 69291249 23676435 9 + - 0 2 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 67782148 67782256 12 68750123 68750252 23676601 3 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 67787062 67787225 12 69779423 69779688 23676667 7 - - 3 1 1 1 146 150 1 0 1 INTRA cancer_singleSample GBM_9_T 509 1039 17 510 492 1057 1 10 14 10 0,454545 extreme_oneoff GBM_9_T;chainID=1 12 67788218 67788364 12 68394711 68394935 23676698 7 + + 1 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 67956652 67956907 12 69778843 69779122 23678321 10 + + 1 2 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T 4 620 617 875 255 875 3 5 6 5 0,47619 extreme_oneoff GBM_9_T;chainID=1 12 68074161 68074364 12 69293273 69293418 23679238 5 + + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 68114110 68114332 12 68125971 68126169 23679523 5 + - 0 1 1 1 150 146 1 0 1 DEL cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 68116067 68116216 12 68121254 68121388 23679526 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 0 661 661 1311 650 1311 0 5 14 18 0,238095 simple NA 12 68300872 68301112 12 68305183 68305451 23680748 15 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 68364318 68364562 12 69737286 69737549 23681295 11 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T 0 634 617 961 327 967 17 10 5 10 0,571429 extreme_oneoff GBM_9_T;chainID=1 12 68397680 68397973 12 69518660 69518966 23681607 11 - + 1 2 1 1 148 150 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 68400670 68400971 12 68468351 68468677 23681633 41 + + 0 1 1 1 149 150 1 0 1 INV cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 68400898 68401112 12 69247552 69247812 23681640 10 + - 1 2 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 68405621 68405799 12 69274676 69274874 23681681 3 - + 0 2 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 68411735 68411984 12 69588135 69588263 23681749 3 + + 0 2 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 68414244 68414440 12 68786506 68786728 23681778 8 + + 1 1 1 1 150 150 1 0 1 INV cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 68414563 68414803 12 68431646 68431908 23681784 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 68414760 68414987 12 69589338 69589552 23681787 5 - - 1 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 68419265 68419506 12 69284604 69284849 23681837 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 68446249 68446568 12 69294591 69294882 23682044 33 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 68447716 68448000 12 69293815 69294086 23682058 18 - + 2 0 1 1 120 150 1 0 1 DUP cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 68452281 68452432 12 69574094 69574243 23682069 3 - + 0 2 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 68510059 68510386 12 69632577 69633026 23682592 341 - - 0 0 1 1 145 147 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 68546067 68546410 12 70673785 70674103 23682918 704 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 68787746 68788007 12 69557978 69558272 23684645 5 - + 0 2 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 69034926 69035197 12 69557216 69557454 23686391 11 - + 2 2 1 1 150 147 1 0 1 DUP cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 69077159 69077342 12 69242488 69242711 23686629 9 - + 2 2 1 1 150 135 1 0 1 DUP cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 69109975 69110218 12 69386190 69386333 23686885 18 - + 0 0 1 1 111 44 1 0 1 DUP cancer_singleSample GBM_8_T 14 158 158 444 144 454 0 15 15 72 0,25641 simple NA 12 69127971 69128255 12 69728580 69728847 23687068 352 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_19_T 6 446 445 694 248 694 1 42 13 14 0,756757 extreme_stepwise GBM_19_T;chainID=1 12 69166694 69166946 12 69168536 69168767 23687329 15 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 69184478 69184766 12 70002231 70002493 23687532 16 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 69186676 69187000 9 136844617 136844732 18807615 60 - - 1 2 1 1 149 145 1 0 1 INTER cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 69189483 69189766 12 69562670 69562954 23687557 3 - - 5 1 1 1 150 150 1 0 1 INV cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 69226466 69226774 12 69228226 69228550 23687707 111 + - 0 0 1 1 128 114 1 0 1 DEL cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 69242676 69242847 12 69455860 69456037 23687763 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 69272123 69272381 12 83587607 83587828 23687981 18 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 0 637 635 811 174 849 2 15 13 3 0,652174 extreme_stepwise GBM_3_T;chainID=2 12 69310382 69310538 12 69325596 69325773 23688247 3 + - 2 3 1 1 107 150 1 0 1 DEL cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 69341097 69341336 12 69374375 69374610 23688384 32 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 69457452 69457623 12 69468558 69468745 23689214 9 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 69532552 69532772 12 69694024 69694330 23689742 19 + + 1 4 1 1 150 130 1 0 1 INV cancer_singleSample GBM_9_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_9_T;chainID=1 12 69573098 69573324 12 70039080 70039348 23689997 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 69577836 69578132 12 70356262 70356531 23690026 19 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_8_T 4 443 436 739 296 741 7 13 34 25 0,305882 simple NA 12 69590305 69590579 12 70359970 70360320 23690110 31 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_8_T 455 908 10 457 445 908 2 14 33 46 0,261682 simple NA 12 69705006 69705262 12 69707483 69707699 23690757 24 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_19_T;chainID=1 12 69755691 69756008 12 70578656 70578967 23691116 379 - - 0 0 1 1 131 150 1 0 1 INV cancer_singleSample GBM_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 69971374 69971479 12 69972573 69972744 23692386 3 + - 2 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 0 584 583 1280 583 1280 1 8 8 4 0,571429 simple NA 12 69995109 69995327 12 70098590 70098812 23692489 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 301 889 10 305 291 889 4 7 14 22 0,28 simple NA 12 70057164 70057475 12 83517542 83517823 23692970 15 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 626 689 1 628 61 716 2 NA NA NA NA extreme_stepwise GBM_3_T;chainID=2 12 70065189 70065344 12 70248007 70248160 23693065 3 + + 0 1 1 1 150 106 1 0 1 INV cancer_singleSample GBM_3_T 772 966 0 772 194 969 0 16 17 4 0,603774 extreme_stepwise GBM_3_T;chainID=2 12 70797976 70798161 12 70834711 70834880 23697085 4 - + 0 0 1 1 150 119 1 0 1 DUP cancer_singleSample BRCA_5_T 617 853 0 619 234 853 2 3 24 24 0,111111 simple NA 12 71005679 71005896 12 71015974 71016150 23698741 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 20 374 374 713 339 1300 0 1 15 9 0,0769231 simple NA 12 71484861 71485058 12 71487008 71487252 23702751 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 597 672 0 593 76 705 -4 8 27 14 0,280702 simple NA 12 71663438 71663622 6 133803820 133803969 18711079 7 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_19_T 607 1229 0 607 607 1229 0 1 10 16 0,0714286 mild_oneoff GBM_19_T;chainID=2 12 71703902 71704074 12 71811323 71811533 23704685 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_19_T 0 625 625 1239 614 1239 0 8 14 16 0,347826 mild_oneoff GBM_19_T;chainID=2 12 71708383 71708508 12 71709597 71709780 23704737 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 288 440 30 288 152 470 0 6 3 17 0,375 simple NA 12 71718780 71719086 12 89522051 89522305 23704829 23 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_6_T 0 608 605 771 163 788 3 19 4 23 0,584615 mild_oneoff LUSC_6_T;chainID=2 12 71805857 71805979 6 169572503 169572681 18711092 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_19_T;chainID=2 12 71840392 71840624 12 71851223 71851425 23705556 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 616 616 1202 586 1202 0 6 13 9 0,352941 simple NA 12 71960629 71960900 X 133719983 133720252 5081552 11 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 72041675 72041921 12 80836068 80836292 23706915 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 616 1254 0 617 616 1254 1 8 2 8 0,615385 simple NA 12 72186378 72186595 12 74670111 74670253 23707747 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 20 134 132 758 112 758 2 10 22 18 0,333333 simple NA 12 72313630 72313934 12 72328755 72329052 23708489 32 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 176 533 24 176 152 544 0 18 30 26 0,391304 simple NA 12 72885360 72885620 12 74773080 74773303 23713180 10 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 614 690 0 617 73 717 3 2 14 3 0,190476 simple NA 12 73112992 73113098 12 76939045 76939169 23715005 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 601 870 0 602 268 888 1 6 14 9 0,342857 extreme_stepwise GBM_3_T;chainID=2 12 73597659 73597886 12 73600706 73600970 23719265 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 608 1219 0 610 608 1219 2 2 22 11 0,108108 simple NA 12 75922521 75922731 12 77201887 77202088 23739956 7 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 612 1304 0 614 612 1304 2 10 14 12 0,434783 simple NA 12 76013363 76013612 12 76028101 76028356 23740776 4 - + 0 0 1 1 54 150 1 0 1 DUP cancer_singleSample BRCA_4_T 114 723 0 116 114 723 2 8 16 23 0,290909 simple NA 12 76032207 76032447 12 84788668 84788895 23740944 8 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 367 864 0 369 367 910 2 14 15 10 0,528302 extreme_stepwise GBM_3_T;chainID=2 12 76334107 76334205 12 76443468 76443630 23743993 3 - + 0 0 1 1 109 137 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 76334430 76334643 9 96011283 96011467 18808333 11 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 76916883 76917160 12 124450272 124450469 23749260 7 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 629 972 0 630 342 981 1 6 10 6 0,428571 extreme_stepwise GBM_3_T;chainID=2 12 76917657 76917786 12 84692016 84692215 23749264 3 - + 1 1 1 1 150 110 1 0 1 INTRA cancer_singleSample GBM_3_T 5 686 684 991 305 1190 2 2 12 1 0,235294 extreme_stepwise GBM_3_T;chainID=2 12 79232205 79232378 12 79243815 79243999 23767560 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 79241412 79241625 12 79242263 79242435 23767625 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 606 787 0 610 177 839 4 6 15 12 0,307692 simple NA 12 79278843 79279073 12 79279848 79280124 23767907 14 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_9_T 0 616 616 1253 616 1253 0 2 2 3 0,444444 simple NA 12 80132701 80132930 12 80134943 80135192 23774330 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 636 633 751 115 782 3 13 5 4 0,742857 simple NA 12 80855672 80855791 12 80932016 80932152 23779838 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 80975344 80975537 12 81866652 81866915 23780572 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_3_T 23 549 549 1064 515 1064 0 9 8 16 0,428571 simple NA 12 81013500 81013652 12 81018083 81018251 23780994 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 128 617 617 1107 489 1129 0 6 19 17 0,25 simple NA 12 81380084 81380274 12 81385005 81385188 23783757 6 + - 3 0 1 1 146 150 1 0 1 DEL cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 82172519 82172655 X 127082421 127082632 5082909 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_8_T 222 266 265 887 43 887 1 2 13 4 0,190476 simple NA 12 83268915 83269149 12 83270850 83271188 23801157 20 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_6_T 469 968 57 469 412 973 0 9 16 20 0,333333 simple NA 12 83875380 83875532 12 84693132 84693335 23806111 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_3_T 636 1051 1 627 416 1130 -9 0 11 0 0 extreme_stepwise GBM_3_T;chainID=2 12 84222609 84222742 12 84234849 84235420 23809077 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 84402889 84403136 12 84412748 84413113 23810475 3 + + 1 0 1 1 65 110 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 85168089 85168219 12 85170164 85170305 23817894 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_19_T 642 729 0 640 88 767 -2 3 0 11 0,352941 simple NA 12 85570090 85570226 8 112018513 112018659 18784028 4 - + 4 0 1 1 150 150 1 0 1 INTER cancer_singleSample COAD_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 86023574 86023667 12 86049153 86049385 23826518 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 593 847 0 594 253 882 1 0 10 9 0 simple NA 12 86687911 86688163 2 115628925 115629140 18609888 11 + - 2 1 1 1 147 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 12 86739594 86739714 12 86906156 86906310 23832817 5 - - 0 0 1 1 87 150 1 0 1 INV cancer_singleSample BRCA_3_T 390 700 327 395 63 888 5 1 34 20 0,0357143 simple NA 12 88477438 88477628 12 88480155 88480335 23849296 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 22 226 225 879 203 879 1 4 11 12 0,258065 simple NA 12 89791424 89791542 12 89890735 89890859 23862149 4 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_10_T 10 217 217 391 174 690 0 10 19 14 0,377358 simple NA 12 91674314 91674454 12 110102373 110102595 23879869 7 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 611 727 0 609 117 727 -2 8 20 30 0,242424 simple NA 12 91785639 91785895 12 91787376 91787614 23881582 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 614 1224 0 616 608 1224 2 11 11 6 0,564103 simple NA 12 93417771 93417893 12 93511085 93511240 23896099 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 118 520 17 122 101 562 4 7 18 22 0,259259 simple NA 12 93599995 93600184 12 93616121 93616354 23897739 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 399 473 186 390 75 671 -9 4 15 16 0,205128 simple NA 12 94385711 94385856 12 94386910 94387040 23904217 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 612 1069 377 605 229 1069 -7 6 13 11 0,333333 simple NA 12 94864339 94864430 12 94865094 94865299 23908162 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 0 597 595 664 67 688 2 NA NA NA NA simple NA 12 95913833 95914044 12 95917284 95917468 23915980 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 118 470 45 120 73 490 2 7 7 9 0,466667 simple NA 12 95974204 95974444 12 95988698 95988918 23916313 3 + + 1 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_7_T 326 723 12 327 314 753 1 3 9 10 0,24 simple NA 12 96125900 96126170 12 96133418 96133663 23917276 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 566 566 695 129 709 0 8 22 22 0,266667 simple NA 12 96557427 96557692 12 96686569 96686855 23920174 13 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_9_T 623 899 0 611 277 972 -12 5 15 9 0,294118 simple NA 12 97104625 97104788 6 125997263 125997522 18713217 7 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 606 914 0 608 306 941 2 10 15 12 0,425532 simple NA 12 97253047 97253266 12 97256714 97256983 23925580 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 5 108 105 559 100 571 3 12 7 12 0,55814 simple NA 12 97897302 97897469 12 97898083 97898359 23931515 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 109 162 164 764 54 764 -2 1 19 5 0,0769231 simple NA 12 98048193 98048365 12 99561322 99561508 23932647 7 - + 0 0 1 1 109 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 0 606 603 792 186 806 3 0 124 33 0 simple NA 12 98756141 98756413 12 98756853 98757084 23939738 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 471 707 4 472 235 707 1 14 11 15 0,518519 simple NA 12 98937047 98937319 12 98961535 98961738 23940950 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 42 367 369 460 92 492 -2 4 19 8 0,228571 simple NA 12 98961583 98961759 12 98975404 98975602 23941110 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 3 630 630 766 136 766 0 3 12 18 0,166667 simple NA 12 98995012 98995291 12 99252320 99252615 23941387 9 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_1_T 612 879 0 608 268 918 -4 3 18 10 0,176471 simple NA 12 99034150 99034341 12 99665152 99665411 23941594 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 442 554 11 442 112 554 0 3 17 0 0,26087 simple NA 12 99126465 99126564 12 99199473 99199690 23941923 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_6_T 0 731 719 792 61 891 12 0 16 15 0 simple NA 12 100251165 100251271 12 100280877 100281096 23103900 3 - + 5 0 1 1 142 150 1 0 1 DUP cancer_singleSample OV_9_T 664 1290 0 668 622 1290 4 2 6 5 0,266667 simple NA 12 100800092 100800325 3 186374067 186374254 18612488 6 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_1_T;chainID=1 12 100800316 100800555 3 186373784 186374031 18612489 13 - + 0 0 1 1 127 150 1 0 1 INTER cancer_singleSample LUSC_1_T 70 369 366 921 296 921 3 3 6 41 0,113208 mild_oneoff LUSC_1_T;chainID=1 12 102198552 102198799 12 131274184 131274407 23119357 10 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 104193374 104193480 12 104329172 104329420 23136339 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 105561507 105561679 7 158118287 158118481 18713950 3 + + 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_6_T 645 799 0 646 153 836 1 3 10 23 0,153846 simple NA 12 105681622 105681889 12 105686824 105687111 23145578 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 610 845 0 616 229 873 6 5 22 12 0,227273 simple NA 12 108861149 108861328 12 112314063 112314155 23168779 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 109569703 109569908 12 110755656 110755887 23172137 7 - + 3 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_5_T 629 1024 0 633 391 1042 4 2 5 18 0,148148 simple NA 12 112401117 112401325 12 119657843 119657938 23188793 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 0 620 620 692 72 716 0 NA NA NA NA simple NA 12 113201833 113202082 12 113205828 113206131 23193804 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 603 601 805 202 856 2 7 12 13 0,358974 simple NA 12 114091384 114091610 12 114112845 114113044 23198494 9 - + 0 0 1 1 150 139 1 0 1 DUP cancer_singleSample OV_10_T 30 259 256 400 141 428 3 5 11 14 0,285714 simple NA 12 114244495 114244687 12 114248247 114248466 23199149 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 627 1029 0 628 401 1029 1 6 17 10 0,307692 simple NA 12 117418696 117418823 12 117694831 117694998 23221445 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 67 304 302 340 36 350 2 NA NA NA NA simple NA 12 118061792 118062035 12 118809717 118810028 23224767 6 - + 0 0 1 1 129 150 1 0 1 DUP cancer_singleSample LUSC_8_T 77 218 216 329 111 329 2 3 50 35 0,0659341 simple NA 12 118528628 118528788 12 118760214 118760418 23227717 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 157 314 13 165 144 314 8 18 27 1 0,5625 simple NA 12 118926970 118927128 12 118930800 118931026 23230279 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 636 1074 0 619 439 1106 -17 0 11 9 0 simple NA 12 119122507 119122630 12 119127462 119127591 23231661 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T 681 965 0 683 282 966 2 3 15 33 0,111111 simple NA 12 119409255 119409396 12 119423716 119423858 23234491 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 120255618 120255785 12 120502977 120503139 23239951 6 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_4_T 610 937 0 611 326 940 1 7 17 19 0,28 simple NA 12 120364774 120364963 12 120375209 120375418 23240558 8 - + 0 0 1 1 137 150 1 0 1 DUP cancer_singleSample LUSC_13_T 652 801 0 654 147 801 2 4 6 13 0,296296 simple NA 12 120731209 120731459 12 120948639 120948850 23242351 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 120751649 120751856 12 120756302 120756583 23242474 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 172 395 16 174 156 446 2 2 8 4 0,25 simple NA 12 121228640 121228893 12 121231069 121231302 23244379 8 + - 0 0 1 1 114 150 1 0 1 DEL cancer_singleSample LUSC_13_T 602 654 0 598 53 663 -4 NA NA NA NA simple NA 12 122304671 122304908 12 122305919 122306177 23249286 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 122869722 122869999 12 123628198 123628493 23251356 16 + - 1 4 1 1 150 147 1 0 1 DEL cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 123020650 123020807 12 123026179 123026284 23252149 4 + - 0 0 1 1 118 150 1 0 1 DEL cancer_singleSample LUSC_11_T 196 747 7 197 189 747 1 2 10 6 0,2 simple NA 12 123480333 123480562 12 124172472 124172747 23254525 5 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_2_T 0 610 610 701 91 715 0 4 4 7 0,421053 simple NA 12 124481314 124481574 12 125663319 125663556 23258675 10 - + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_5_T 608 898 0 609 289 898 1 7 16 27 0,245614 simple NA 12 124957905 124958044 12 124958702 124958884 23260422 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 1 125 123 736 122 740 2 7 7 5 0,538462 simple NA 12 125197280 125197434 3 178911489 178911743 18615576 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise BRCA_1_T;chainID=3 12 125392262 125392469 12 125423889 125424088 23261432 7 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 89 273 277 844 185 845 -4 1 0 28 0,0666667 simple NA 12 125957753 125958060 12 125969055 125969320 23264005 23 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 126115327 126116203 12 126126446 126126966 23264967 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 126643249 126643448 12 126645736 126645994 23269026 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 17 615 614 944 329 960 1 9 16 21 0,327273 simple NA 12 127605504 127605746 12 127612198 127612412 23275525 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 127855258 127855400 12 128265477 128265601 23277018 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 624 964 0 625 339 964 1 12 31 8 0,380952 simple NA 12 128521575 128521809 12 128575697 128575919 23280991 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 291 351 19 293 58 351 2 NA NA NA NA simple NA 12 128840112 128840306 7 137817301 137817484 18715829 7 + - 1 2 1 1 150 150 1 0 1 INTER cancer_singleSample OV_4_T 317 962 20 322 297 962 5 4 11 20 0,205128 simple NA 12 129551022 129551200 12 129555301 129555519 23286117 7 + - 0 0 1 1 139 150 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 129763551 129763812 8 132419428 132419707 18760656 7 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 129795370 129795465 12 129795773 129795879 23287797 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 130067571 130067886 12 130068017 130068428 23289850 3 + - 1 1 1 1 78 150 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 130239675 130239906 12 130496420 130496669 23290960 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 130881683 130881880 12 130882651 130882814 23293775 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 12 132268162 132268324 12 132289621 132289836 23298613 4 - - 2 0 1 1 89 150 1 0 1 INV cancer_singleSample BRCA_2_T 350 769 2 368 348 777 18 0 10 9 0 simple NA 12 132279552 132279808 12 132283202 132283484 23298634 11 + - 1 1 1 1 150 121 1 0 1 DEL cancer_singleSample OV_9_T 0 611 608 1129 518 1158 3 1 1 7 0,2 simple NA 12 132837516 132837730 3 155726919 155727079 18616570 5 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 617 1226 0 619 607 1230 2 2 0 8 0,333333 simple NA 12 132886115 132886477 12 132898935 132899263 23299909 9 - + 0 0 1 1 127 141 1 0 1 DUP cancer_singleSample LUAD_3_T 28 171 168 661 140 700 3 3 17 9 0,1875 simple NA 12 133114209 133114448 12 133203984 133204254 23300485 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 460 917 19 465 441 917 5 5 13 31 0,185185 simple NA 12 133478432 133478676 12 133479300 133479593 23301810 19 + - 0 0 1 1 59 121 1 0 1 DEL cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 19926515 19926790 13 25071301 25071427 24048879 6 - - 0 1 1 1 150 139 1 0 1 INTRA cancer_singleSample GBM_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 20254376 20254537 13 20308171 20308351 24051093 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 0 409 406 487 78 648 3 12 14 18 0,428571 simple NA 13 21598736 21598951 14 71157146 71157394 24460351 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 0 654 651 842 188 859 3 0 1 24 0 simple NA 13 21598864 21599057 6 99717945 99718139 18865899 5 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 366 874 133 367 233 891 1 3 9 16 0,193548 simple NA 13 22617012 22617262 13 43219138 43219338 24059719 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 25215096 25215255 13 25216365 25216541 24070360 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 25605969 25606139 6 53313910 53314107 18866929 6 - + 0 0 1 1 134 130 1 0 1 INTER cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_8_T;chainID=1 13 25605998 25606143 14 99428142 99428324 24460844 4 + - 0 0 1 1 113 150 1 0 1 INTER cancer_singleSample GBM_8_T 0 291 291 680 291 699 0 4 2 16 0,307692 mild_oneoff GBM_8_T;chainID=1 13 26108762 26108929 14 95158155 95158353 24460870 5 + - 1 0 1 1 134 137 1 0 1 INTER cancer_singleSample GBM_8_T 1 199 194 519 193 542 5 3 8 10 0,25 simple NA 13 28020176 28020322 13 30400261 30400414 24082309 5 + - 0 0 1 1 150 118 1 0 1 INTRA cancer_singleSample BRCA_6_T 320 951 17 320 303 969 0 6 13 59 0,142857 simple NA 13 29124766 29124997 13 29734966 29735163 24087049 6 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_6_T 603 730 0 606 124 769 3 4 14 14 0,222222 simple NA 13 29288690 29288905 13 29321336 29321506 24087767 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 20 331 335 739 312 739 -4 3 31 21 0,103448 simple NA 13 30125998 30126135 13 95436354 95436530 24091941 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_10_T 40 234 234 650 194 671 0 9 29 39 0,209302 simple NA 13 30398913 30399395 13 30412329 30413610 24093389 3 - - 0 0 1 1 66 150 1 0 1 INV cancer_singleSample BRCA_3_T 16 601 593 766 165 780 8 0 109 21 0 simple NA 13 30416311 30416423 2 216065114 216065345 18816372 3 + + 7 1 1 1 34 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 31771548 31771730 13 33154776 33154928 24098887 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_6_T 465 933 18 466 447 950 1 14 4 5 0,756757 simple NA 13 32030491 32030650 17 48961170 48961326 24468085 5 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 0 657 652 788 131 807 5 7 22 15 0,27451 simple NA 13 32037471 32037613 18 35351214 35351455 24468932 5 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 283 892 50 283 233 892 0 7 16 29 0,237288 simple NA 13 33284723 33284972 9 131325424 131325719 18894706 4 - + 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 123 655 0 125 123 655 2 4 23 17 0,166667 simple NA 13 33398270 33398521 13 47225175 47225430 24107908 9 + + 5 2 1 1 143 150 1 0 1 INTRA cancer_singleSample OV_4_T 586 688 0 585 103 720 -1 7 9 9 0,4375 simple NA 13 34296518 34296636 13 41358517 41358652 24112613 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 34572377 34572502 13 34573351 34573517 24114522 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T 257 881 67 250 184 881 -7 9 23 20 0,295082 simple NA 13 35494145 35494258 2 132462500 132462776 18817477 3 - + 5 0 1 1 150 86 1 0 1 INTER cancer_singleSample GBM_17_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 37186778 37187027 13 37189638 37189859 24130910 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 62 590 589 977 387 1035 1 11 26 16 0,34375 simple NA 13 37389307 37389551 6 90846728 90846979 18868904 4 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 178 556 1 178 177 577 0 1 20 9 0,0645161 simple NA 13 37389853 37390136 6 90846399 90846672 18868905 6 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 598 717 18 599 118 727 1 5 19 7 0,277778 simple NA 13 37442178 37442383 13 93491068 93491273 24132648 6 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T 284 672 8 287 276 674 3 11 21 15 0,37931 simple NA 13 38331611 38331872 13 38333852 38334090 24137971 17 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 622 620 772 150 798 2 5 18 23 0,196078 simple NA 13 38536932 38537147 13 38538482 38538767 24139396 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 57 582 578 676 94 702 4 2 25 22 0,0784314 simple NA 13 39637571 39637801 13 39648015 39648229 24146008 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T 505 851 0 484 347 884 -21 2 24 9 0,108108 simple NA 13 40481442 40481679 13 40482295 40482491 24151469 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 588 588 841 253 880 0 5 17 14 0,243902 simple NA 13 43256567 43256775 6 117314354 117314554 18869869 5 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_19_T 603 817 0 609 208 832 6 3 12 13 0,193548 mild_oneoff GBM_19_T;chainID=2 13 44179065 44179297 13 44179997 44180189 24168890 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 613 612 1219 606 1219 1 13 0 4 0,866667 simple NA 13 44464218 44464342 13 44476085 44476185 24170359 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 46509817 46510038 13 46511395 46511552 24178166 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 0 634 642 727 86 1143 -8 10 7 5 0,625 simple NA 13 46634086 46634298 14 95157109 95157319 24462235 11 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_8_T 422 720 150 423 272 728 1 5 5 9 0,416667 simple NA 13 46647664 46647745 2 79367580 79367667 18820009 3 + - 0 3 1 1 150 31 1 0 1 INTER cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 48500565 48500707 6 53314449 53314636 18870785 4 + - 0 0 1 1 150 143 1 0 1 INTER cancer_singleSample GBM_8_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_8_T;chainID=1 13 48964716 48964899 4 89688015 89688266 18850661 6 + - 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_6_T 602 1213 0 608 602 1213 6 8 3 23 0,380952 simple NA 13 50605149 50605357 13 50949835 50950043 24198387 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_15_T 0 612 611 1218 606 1220 1 7 0 0 1 simple NA 13 50643478 50643742 13 50646137 50646398 24198520 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 613 1235 0 608 609 1235 -5 4 11 5 0,333333 simple NA 13 51204771 51204987 13 51217769 51217977 24201409 9 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 597 922 0 601 321 922 4 17 13 9 0,607143 simple NA 13 51954948 51955165 13 79456799 79457020 24204408 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 52215669 52215745 5 103464448 103464569 18861214 3 + - 3 0 1 1 55 150 1 0 1 INTER cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 52359501 52359722 13 52360501 52360738 24206066 12 + - 0 0 1 1 146 150 1 0 1 DEL cancer_singleSample OV_10_T 591 1136 0 593 543 1177 2 2 0 1 0,8 simple NA 13 52775641 52775777 13 53183663 53183765 24207071 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 53610943 53611165 2 163622620 163622879 18821444 8 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_5_T 370 737 23 372 347 787 2 4 29 25 0,129032 simple NA 13 57034355 57034600 13 57043363 57043591 24230102 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 614 610 1215 601 1215 4 5 14 8 0,3125 simple NA 13 57155344 57155494 13 57156627 57156810 24230806 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 57758221 57758409 13 57789127 57789282 24234775 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_1_T 591 804 0 592 212 816 1 4 12 6 0,307692 simple NA 13 60125958 60126239 13 60136325 60136660 24247641 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 60952977 60953247 13 60963635 60963916 24251558 20 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 574 835 45 557 262 858 -17 23 10 8 0,71875 simple NA 13 61460459 61460766 2 83464945 83465184 18823035 5 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_5_T;chainID=3 13 61461069 61461437 2 83464603 83464860 18823036 17 - + 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_5_T;chainID=3 13 61461190 61461365 9 117757740 117757912 18897244 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_5_T 12 409 407 510 101 511 2 1 27 22 0,0392157 mild_oneoff LUSC_5_T;chainID=3 13 63842676 63842927 2 217270051 217271375 18823366 14 + - 0 0 1 1 138 150 1 0 1 INTER cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 64442579 64442714 13 64798018 64798166 24269674 3 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T 6 391 390 731 340 731 1 2 41 41 0,0465116 simple NA 13 65081235 65081431 3 168798483 168798656 18838067 3 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_5_T 592 830 0 596 234 887 4 1 32 57 0,021978 extreme_stepwise LUSC_5_T;chainID=1 13 65417031 65417321 3 168919984 168920465 18838086 59 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_5_T 127 514 49 128 78 524 1 23 16 41 0,446602 simple NA 13 66206683 66206933 13 66208383 66208649 24280523 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 561 1064 32 567 497 1065 6 5 16 21 0,212766 simple NA 13 66343082 66343346 13 66343906 66344199 24281521 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T 609 1202 0 611 591 1202 2 3 16 17 0,153846 simple NA 13 68416234 68416482 13 68418493 68418763 24291469 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 449 1056 32 437 406 1056 -12 5 20 21 0,196078 simple NA 13 69606934 69607087 13 69689806 69689979 24297648 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 79 325 322 564 239 842 3 9 10 15 0,418605 simple NA 13 70948702 70948872 13 70949498 70949706 24305109 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 420 978 239 412 174 978 -8 10 7 6 0,606061 simple NA 13 73300561 73300692 13 73317715 73317853 24317404 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_10_T 0 620 620 793 173 825 0 1 16 18 0,0555556 simple NA 13 75063019 75063074 9 76620278 76620362 18897907 3 + - 1 0 1 1 147 109 1 0 1 INTER cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 75624885 75625091 7 100483603 100483784 18884691 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 76348980 76349215 2 103918577 103918791 18824902 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 76504851 76505050 5 150228936 150229138 18862791 6 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 76534267 76534581 13 76543336 76543600 24334268 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 157 702 28 160 129 872 3 8 28 34 0,205128 simple NA 13 79826549 79826813 13 79830013 79830326 24353129 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 41 564 561 769 205 804 3 5 17 21 0,208333 simple NA 13 80969719 80969916 13 80970894 80971163 24359307 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 266 486 32 271 215 493 5 5 21 31 0,16129 simple NA 13 81959568 81959771 13 81961447 81961675 24364890 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 606 1249 0 610 606 1249 4 10 13 3 0,555556 simple NA 13 82044249 82044501 3 123592076 123592321 18840318 7 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_8_T 614 1119 0 617 502 1120 3 5 17 19 0,217391 simple NA 13 82543387 82543598 13 82544264 82544472 24368444 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 82859461 82859638 3 145704282 145704587 18840392 4 - - 1 0 1 1 150 92 1 0 1 INTER cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 83189418 83189710 8 119201786 119202036 18890778 8 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 3 447 444 903 441 910 3 6 27 27 0,181818 simple NA 13 83583446 83583678 13 83587036 83587316 24374303 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 606 863 2 609 254 899 3 6 20 16 0,25 simple NA 13 84543788 84543967 13 84551292 84551472 24379282 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T 618 1049 0 620 429 1056 2 4 13 12 0,242424 simple NA 13 84701695 84701835 6 129158617 129158827 18874921 4 + - 0 0 1 1 140 150 1 0 1 INTER cancer_singleSample GBM_8_T 390 548 1 390 158 563 0 7 7 18 0,358974 simple NA 13 88197434 88197594 13 88200190 88200361 24398153 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 18 620 619 1274 601 1283 1 3 21 23 0,12 simple NA 13 89815512 89815786 7 108717142 108717415 18885681 19 - + 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T 0 559 559 644 85 675 0 4 13 20 0,195122 simple NA 13 93649158 93649350 4 172711450 172711604 18856515 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_7_T 163 784 0 167 163 784 4 1 22 5 0,0689655 simple NA 13 96199333 96199596 13 96200084 96200359 24442447 19 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 478 572 0 479 93 574 1 NA NA NA NA simple NA 13 98161695 98162443 13 98176757 98177347 24453204 3 - - 0 0 1 1 150 82 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 99068268 99068386 13 99350300 99350423 24456813 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_7_T 4 101 101 270 97 274 0 0 10 12 0 simple NA 13 99165538 99165743 13 99303944 99304145 24456951 8 - - 0 0 1 1 150 136 1 0 1 INV cancer_singleSample OV_7_T 21 312 312 606 291 610 0 1 24 18 0,0454545 simple NA 13 100161322 100161587 13 100177238 100177462 23982943 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 593 715 8 597 118 726 4 3 19 22 0,12766 simple NA 13 102737141 102737398 13 102753655 102753920 23994411 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 105247009 105247260 13 105255859 105256061 24008312 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 615 1145 0 618 527 1183 3 7 25 23 0,225806 simple NA 13 105812256 105812490 13 105816067 105816222 24011318 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 606 836 0 608 228 836 2 15 17 25 0,416667 simple NA 13 107065589 107065788 13 111031146 111031315 24017452 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_7_T 231 872 15 232 216 872 1 3 13 14 0,181818 simple NA 13 108526334 108526513 13 108726218 108726445 24024535 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 639 636 808 169 823 3 8 25 27 0,235294 simple NA 13 108947348 108947542 3 123595234 123595386 18829785 8 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_2_T 0 699 696 1111 412 1114 3 5 2 39 0,196078 simple NA 13 109398560 109398977 13 109410205 109411391 24029294 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 13 110791869 110792084 13 110803866 110804128 24035250 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 531 960 34 533 427 960 2 19 27 25 0,422222 simple NA 13 113263020 113263272 13 113267806 113268064 24042530 15 + - 0 0 1 1 125 150 1 0 1 DEL cancer_singleSample GBM_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 20354540 20354681 14 20355938 20356123 24501481 3 + - 2 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_5_T 0 637 636 884 247 886 1 3 8 7 0,285714 simple NA 14 20403609 20403811 14 40734808 40734972 24501930 8 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_16_T;chainID=2 14 21043586 21043857 14 34793675 34793964 24505550 23 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 21067979 21068160 14 25028387 25028567 24505640 5 + + 0 1 1 1 150 127 1 0 1 INTRA cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 21670985 21671189 14 74974496 74974640 24508080 9 - - 0 0 1 1 150 137 1 0 1 INTRA cancer_singleSample GBM_8_T 599 694 0 601 93 742 2 7 7 8 0,482759 simple NA 14 21708797 21708958 14 75840867 75841063 24508262 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_4_T 0 609 606 761 152 768 3 6 14 11 0,324324 simple NA 14 21740037 21740143 8 95816288 95816395 19008420 4 + + 0 0 1 1 59 150 1 0 1 INTER cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 22282570 22282719 14 23083690 23083847 24510964 6 - - 2 2 1 1 58 75 1 0 1 INV cancer_singleSample OV_5_T 510 717 281 514 203 717 4 3 19 1 0,230769 simple NA 14 22756085 22756260 3 55968223 55968413 18933636 10 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_17_T 604 980 0 607 373 1040 3 16 28 28 0,363636 mild_oneoff GBM_17_T;chainID=2 14 22807984 22808226 2 160073584 160073851 18913033 18 + - 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample OV_5_T 0 607 606 751 144 770 1 11 31 13 0,333333 simple NA 14 23053136 23053365 3 55968281 55968480 18933699 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_17_T 312 921 77 313 235 921 1 6 19 22 0,226415 mild_oneoff GBM_17_T;chainID=2 14 23168794 23168940 14 33539435 33539577 24516584 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_12_T;chainID=1 14 23258533 23258724 14 23261723 23261925 24517129 6 + - 1 0 1 1 121 150 1 0 1 DEL cancer_singleSample OV_6_T 7 190 188 303 113 303 2 8 33 16 0,246154 simple NA 14 23365970 23366060 14 23395223 23395419 24517398 5 + + 0 0 1 1 145 139 1 0 1 INV cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 23720833 23720965 14 23735363 23736043 24518415 3 - - 0 1 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T 322 779 3 430 319 824 108 8 13 16 0,355556 simple NA 14 24443302 24443414 14 24482636 24483557 24521735 4 - - 1 0 1 1 119 149 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 24549271 24549474 14 33591428 33591607 24521906 7 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_12_T;chainID=1 14 24554478 24554672 14 33591421 33591617 24521911 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_12_T;chainID=1 14 24788476 24788559 14 24812328 24812419 24522275 4 - - 0 1 1 1 150 150 1 0 1 INV cancer_singleSample OV_3_T 577 928 0 579 349 934 2 0 9 7 0 simple NA 14 25088264 25088521 17 74036540 74036739 24937881 18 - + 0 0 1 1 98 145 1 0 1 INTER cancer_singleSample OV_10_T 159 390 38 161 121 420 2 4 6 12 0,307692 simple NA 14 25754105 25754487 14 25790068 25790450 24528486 34 + - 1 0 1 1 72 145 1 0 1 DEL cancer_singleSample GBM_6_T 570 1008 0 575 433 1025 5 9 6 3 0,666667 simple NA 14 28149989 28150097 4 75641709 75641966 18948420 3 - + 0 0 1 1 150 133 1 0 1 INTER cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 28273437 28273685 14 28422743 28422992 24546448 13 + - 0 0 1 1 106 150 1 0 1 DEL cancer_singleSample LUSC_1_T 276 712 74 277 202 720 1 11 72 17 0,198198 simple NA 14 28460308 28460500 14 28460932 28461120 24548225 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T 657 1264 0 641 608 1264 -16 11 0 0 1 simple NA 14 28624460 28624695 14 28633390 28633622 24549486 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 244 385 382 916 138 924 3 8 13 14 0,372093 simple NA 14 28698451 28698657 14 36934678 36934890 24549952 10 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 29199803 29199967 14 29210741 29210915 24553352 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 29717103 29717317 14 30735935 30736147 24556876 14 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_12_T 0 610 673 747 75 767 -63 10 6 7 0,606061 simple NA 14 29880573 29880832 14 29952766 29953033 24558066 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 202 813 67 202 135 813 0 10 11 5 0,555556 simple NA 14 30828985 30829142 14 38194751 38194875 24564162 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_7_T 67 556 557 717 161 831 -1 5 18 11 0,25641 simple NA 14 32930138 32930305 14 84503122 84503293 24575162 3 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 33787246 33787421 14 49017453 49017619 24580677 5 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 34180188 34180373 3 181447716 181447906 18935764 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_17_T 546 1184 57 548 489 1184 2 12 26 19 0,347826 simple NA 14 34225008 34225236 3 181377367 181377581 18935770 13 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_17_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 34464205 34464534 14 38540681 38540988 24584702 22 + - 0 0 1 1 143 145 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUAD_3_T;chainID=1 14 35881521 35881826 14 41830907 41831027 24591035 9 - - 0 0 1 1 141 122 1 0 1 INTRA cancer_singleSample LUAD_3_T 160 468 95 195 65 474 35 0 5 3 0 extreme_stepwise LUAD_3_T;chainID=1 14 35920826 35920961 14 40880837 40881053 24591282 11 + - 0 0 1 1 50 150 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUAD_3_T;chainID=1 14 36676166 36676400 14 38510500 38510741 24595154 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUAD_3_T;chainID=1 14 36823335 36823621 14 38802630 38802924 24596068 11 + + 0 0 1 1 114 150 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 36988405 36988735 14 38529887 38530231 24596917 54 + + 0 0 1 1 139 127 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUAD_3_T;chainID=1 14 36989178 36989364 14 43301038 43301227 24596919 10 - - 0 0 1 1 118 150 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUAD_3_T;chainID=1 14 37144824 37144969 14 42035265 42035551 24597475 10 + + 0 0 1 1 119 139 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUAD_3_T;chainID=1 14 37559958 37560200 14 38116430 38116646 24600205 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 0 612 608 1208 596 1208 4 11 14 14 0,44 simple NA 14 37642698 37642805 14 38338439 38338564 24600596 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUAD_3_T;chainID=1 14 37655479 37655695 14 38336875 38337176 24600683 8 + + 0 0 1 1 150 145 1 0 1 INV cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUAD_3_T;chainID=1 14 37678560 37678831 14 37723348 37723568 24600753 5 + + 0 0 1 1 130 126 1 0 1 INV cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUAD_3_T;chainID=1 14 37691975 37692284 14 42050062 42050361 24600883 14 + + 0 0 1 1 138 150 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUAD_3_T;chainID=1 14 37693355 37693643 14 42040193 42040487 24600909 16 + - 0 0 1 1 150 140 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUAD_3_T;chainID=1 14 37695795 37695989 14 38338436 38338646 24600922 6 + - 0 0 1 1 148 150 1 0 1 DEL cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUAD_3_T;chainID=1 14 38620399 38620496 14 38622709 38622874 24606884 6 + - 1 0 1 1 147 150 1 0 1 DEL cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUAD_3_T;chainID=1 14 38855368 38855538 14 51183969 51184164 24608348 4 - - 0 0 1 1 150 62 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 39102655 39102875 14 40657702 40657908 24610795 5 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 400 1008 29 406 371 1008 6 14 17 18 0,444444 mild_oneoff GBM_16_T;chainID=2 14 39103683 39103859 14 40502442 40502642 24610796 10 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 607 1076 0 607 469 1106 0 7 8 13 0,4 mild_oneoff GBM_16_T;chainID=2 14 39153952 39154097 14 40734345 40734485 24611398 3 + + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_16_T;chainID=2 14 39221143 39221425 7 110346081 110346303 19001990 5 - - 0 0 1 1 133 150 1 0 1 INTER cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 40000243 40000843 14 40009821 40010874 24615502 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 40787063 40787165 14 71850197 71850342 24621266 5 - - 0 0 1 1 122 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 235 947 0 237 235 947 2 5 26 9 0,222222 extreme_stepwise LUAD_3_T;chainID=1 14 41190065 41190333 14 41202487 41202670 24623646 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 41253893 41254169 14 41258263 41258521 24624124 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 607 1217 0 609 607 1218 2 12 3 5 0,75 simple NA 14 41604137 41604420 3 102436568 102436868 18937617 12 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T 608 744 0 610 134 748 2 3 26 38 0,0857143 simple NA 14 42132220 42132445 X 73582465 73582690 5173977 11 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T 658 755 0 659 96 755 1 NA NA NA NA simple NA 14 43509921 43510207 14 44214614 44214872 24639193 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 0 618 618 1001 383 1009 0 1 26 24 0,0384615 simple NA 14 44013734 44013959 14 44019019 44019218 24642709 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 44421991 44422184 14 84901220 84901397 24645203 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 1 430 430 916 429 930 0 9 25 20 0,285714 simple NA 14 45052668 45052826 14 45054092 45054249 24649660 9 + - 1 0 1 1 140 150 1 0 1 DEL cancer_singleSample LUSC_13_T 7 217 214 786 207 826 3 2 2 124 0,0307692 simple NA 14 48393101 48393236 14 48394095 48394261 24670894 4 + - 2 0 1 1 150 100 1 0 1 DEL cancer_singleSample BRCA_1_T 632 1054 0 633 421 1101 1 6 3 2 0,705882 simple NA 14 48932075 48932340 14 48933664 48933897 24674486 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_6_T 3 654 653 1260 606 1260 1 2 21 20 0,0888889 simple NA 14 49904882 49905029 14 49907043 49907227 24681751 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 0 605 606 737 132 760 -1 3 8 9 0,26087 simple NA 14 50448223 50448431 14 50462555 50462666 24684137 3 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_4_T 10 631 631 751 120 764 0 2 16 15 0,114286 simple NA 14 52050706 52050850 14 52051439 52051592 24691196 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 52919282 52919404 14 76903893 76904035 24695319 3 - - 0 0 1 1 150 142 1 0 1 INTRA cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 53258781 53259045 14 53259872 53260143 24696677 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 12 229 228 439 210 451 1 4 12 12 0,25 simple NA 14 54798912 54799165 14 58392008 58392234 24706307 11 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_6_T 31 393 393 632 239 657 0 12 28 25 0,311688 simple NA 14 56501001 56501167 14 97406836 97407099 24713972 4 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 29 620 615 882 262 885 5 0 4 15 0 simple NA 14 57753667 57753857 14 57777849 57778029 24720371 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 7 44 43 620 36 627 1 9 12 7 0,486486 simple NA 14 58219658 58219872 14 58228711 58229020 24723158 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 610 606 1211 601 1211 4 5 14 16 0,25 simple NA 14 58712009 58712177 14 58715764 58715925 24725850 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 574 799 0 575 224 847 1 8 26 14 0,285714 simple NA 14 59220384 59220521 8 88688080 88688253 19011382 6 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_6_T 0 507 507 622 115 633 0 5 14 20 0,227273 simple NA 14 59220570 59220878 9 89303933 89304264 19032605 23 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_6_T 267 412 2 270 142 422 3 31 18 23 0,601942 simple NA 14 60540319 60540459 14 60749147 60749367 24735204 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 60921365 60921583 14 60930461 60930653 24738056 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 39 554 551 996 442 1009 3 18 18 20 0,486486 simple NA 14 61387924 61388190 3 180638322 180638538 18941390 7 - + 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample OV_5_T 0 621 618 1031 410 1059 3 5 7 36 0,188679 mild_oneoff OV_5_T;chainID=3 14 62004953 62005184 2 64576532 64576786 18923341 13 - - 0 0 1 1 131 150 1 0 1 INTER cancer_singleSample OV_10_T 37 314 311 516 202 521 3 7 14 6 0,411765 simple NA 14 62208729 62208915 3 180638316 180638509 18941469 6 + - 0 4 1 1 150 135 1 0 1 INTER cancer_singleSample OV_5_T 731 1399 16 733 666 1399 2 6 9 9 0,4 mild_oneoff OV_5_T;chainID=3 14 66751349 66751600 14 66806015 66806272 24766997 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T 603 1211 0 606 603 1211 3 6 12 7 0,387097 simple NA 14 66998572 66998732 14 67017803 67017977 24768839 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 572 734 54 573 161 759 1 1 31 25 0,0344828 simple NA 14 67018730 67018976 14 67106847 67107072 24768871 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 0 614 613 691 77 714 1 3 26 19 0,117647 simple NA 14 67101733 67101937 14 67387507 67387702 24769273 12 + - 0 0 1 1 150 138 1 0 1 DEL cancer_singleSample READ_2_T 0 613 609 1203 590 1203 4 8 5 7 0,571429 simple NA 14 67849165 67849305 14 67850087 67850285 24773619 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_10_T 342 837 42 344 300 872 2 7 22 18 0,259259 simple NA 14 68650913 68651076 14 68654268 68654489 24776993 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 68808894 68809065 14 75654358 75654572 24778024 5 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_3_T 20 191 188 694 168 698 3 11 26 46 0,234043 simple NA 14 68831934 68832189 14 68886910 68887048 24778132 5 + - 2 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_5_T 0 631 631 907 276 907 0 5 9 14 0,30303 simple NA 14 68920567 68920898 14 68931076 68931982 24778730 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 69791945 69792139 14 85813744 85813967 24782060 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_8_T 250 625 2 251 248 666 1 4 11 12 0,258065 simple NA 14 70064455 70064611 17 76699888 76700044 24938967 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 70855750 70856011 2 226100104 226100318 18924675 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_7_T 286 713 11 283 273 728 -3 0 6 15 0 simple NA 14 71092707 71092918 9 119640816 119641081 19033231 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 423 701 3 428 273 733 5 3 7 23 0,166667 simple NA 14 71102202 71102414 9 119634181 119634300 19033232 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 71281883 71282100 14 71282658 71282820 24788354 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 618 1006 0 617 389 1057 -1 12 3 3 0,8 simple NA 14 71316265 71316425 6 133589503 133589633 18986516 4 + - 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 71546968 71547083 6 159706966 159707085 18986562 3 + - 5 0 1 1 66 117 1 0 1 INTER cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 71570436 71570655 14 71571745 71571965 24789626 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 11 315 312 901 301 913 3 6 2 4 0,666667 simple NA 14 71577663 71577867 6 169306078 169306294 18986572 5 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_19_T 429 564 8 430 134 576 1 2 20 15 0,102564 mild_oneoff GBM_19_T;chainID=2 14 72060807 72061077 14 72063002 72063314 24792024 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 108 660 674 807 134 828 -14 12 41 36 0,237624 simple NA 14 73034634 73034887 14 98736952 98737176 24797287 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T 496 1115 62 499 434 1115 3 6 6 13 0,387097 simple NA 14 73044985 73045143 14 98743761 98743957 24797342 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T 644 834 0 645 189 846 1 8 14 16 0,347826 simple NA 14 73615610 73616100 14 73625017 73626038 24799240 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 74354423 74354622 14 74362599 74362784 24801730 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 1 682 679 794 112 813 3 0 31 33 0 simple NA 14 75748556 75748737 14 75751659 75751876 24807303 8 + - 0 0 1 1 150 108 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 77647773 77648017 14 77656105 77656349 24815059 46 + - 0 0 1 1 143 146 1 0 1 DEL cancer_singleSample OV_3_T 292 505 7 294 211 506 2 11 31 27 0,275 simple NA 14 81477731 81477973 14 81493566 81493717 24836591 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 81701593 81701708 3 143002522 143002647 18944026 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 83059683 83059857 14 85455306 85455433 24846043 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 85300243 85300420 14 88495041 88495206 24860616 5 - - 0 0 1 1 141 150 1 0 1 INTRA cancer_singleSample GBM_8_T 591 666 0 585 76 679 -6 NA NA NA NA simple NA 14 85437248 85437508 14 85438589 85438805 24861638 18 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 633 633 732 99 733 0 3 8 10 0,25 simple NA 14 87026582 87026793 14 87032525 87032762 24871420 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 87245744 87245894 14 87844842 87844996 24873181 9 + - 0 0 1 1 140 131 1 0 1 DEL cancer_singleSample GBM_8_T 423 881 0 423 423 933 0 6 7 7 0,461538 simple NA 14 87299646 87299876 4 137213989 137214209 18958485 10 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_1_T 0 630 630 730 100 730 0 4 12 12 0,25 simple NA 14 87299935 87300135 4 137213861 137214024 18958486 8 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 87870607 87870844 14 87872774 87873061 24877404 30 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 161 789 72 158 87 789 -3 9 3 6 0,666667 simple NA 14 89339408 89339637 9 131041735 131041922 19033904 7 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_17_T 607 757 0 610 147 799 3 4 20 15 0,186047 simple NA 14 93840080 93840293 14 93937804 93938021 24904372 8 - - 0 1 1 1 150 150 1 0 1 INV cancer_singleSample OV_5_T 0 640 649 818 170 850 -9 7 17 18 0,285714 simple NA 14 94247647 94247949 14 94612901 94613158 24906378 10 + + 0 4 1 1 150 123 1 0 1 INV cancer_singleSample OV_5_T 25 441 435 640 199 640 6 12 31 30 0,282353 simple NA 14 94272895 94273090 14 94281917 94282065 24906414 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 96443894 96444020 14 96445115 96445262 24914747 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T 0 607 611 851 241 856 -4 1 14 15 0,0645161 simple NA 14 100530759 100530884 2 232162661 232162824 18898988 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 631 1042 0 637 405 1047 6 2 12 25 0,097561 simple NA 14 104981248 104981428 2 156527979 156528078 18899513 4 - + 1 0 1 1 147 150 1 0 1 INTER cancer_singleSample OV_6_T 0 496 511 730 220 730 -15 1 23 4 0,0689655 simple NA 14 106358706 106358869 14 106377536 106377861 24484075 7 + - 1 0 1 1 141 150 1 0 1 DEL cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 14 106683841 106684048 4 182823744 182824007 18946071 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T 0 611 608 1217 606 1217 3 4 29 13 0,16 simple NA 15 24361810 24361904 15 24524974 24525096 24969696 3 - + 1 0 1 1 129 150 1 0 1 DUP cancer_singleSample GBM_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 24710181 24710405 15 24715374 24715628 24973439 9 + - 0 0 1 1 150 93 1 0 1 DEL cancer_singleSample BRCA_8_T 310 806 0 312 310 819 2 5 6 6 0,454545 simple NA 15 25355938 25356084 15 68741305 68741554 24974539 3 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T 0 637 635 839 202 871 2 2 23 11 0,105263 simple NA 15 25996996 25997195 15 26306029 26306239 24975657 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 26166197 26166406 15 99358093 99358295 24975802 3 - + 2 1 1 1 123 150 1 0 1 INTRA cancer_singleSample GBM_9_T 0 666 666 725 59 768 0 0 10 8 0 simple NA 15 27329506 27329819 15 27330302 27330562 24977661 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 28275206 28275490 15 28279112 28279400 24979254 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 232 561 0 229 230 561 -3 8 21 12 0,326531 simple NA 15 28472343 28472552 20 48515482 48515666 25140891 5 + - 0 0 1 1 86 150 1 0 1 INTER cancer_singleSample BRCA_5_T 101 521 520 819 298 819 1 18 12 32 0,45 simple NA 15 29830554 29830672 15 35421233 35421427 24981841 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_16_T 0 613 611 1234 611 1234 2 7 9 11 0,411765 simple NA 15 30331983 30332188 15 30333056 30333258 24982552 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 31214435 31214619 15 42834380 42834542 24987061 5 + + 0 0 1 1 150 131 1 0 1 INTRA cancer_singleSample GBM_17_T 0 609 609 704 95 707 0 NA NA NA NA simple NA 15 31380147 31380323 15 31381071 31381250 24987256 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 33030396 33031119 15 33040873 33041717 24989160 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 33414202 33414405 15 34522953 34523199 24989949 9 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 33755720 33755966 15 76513332 76513605 24990564 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T 0 610 607 1220 607 1220 3 5 8 24 0,238095 simple NA 15 35878667 35878826 15 35879335 35879487 24994674 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 610 610 1209 599 1220 0 9 5 7 0,6 simple NA 15 36431256 36431423 15 36440586 36441814 24996121 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 36589653 36589964 15 36608015 36608312 24996601 26 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 607 605 897 290 926 2 14 16 16 0,466667 simple NA 15 36634601 36634851 15 36715560 36715783 24996695 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 2 622 628 1196 569 1196 -6 6 15 12 0,307692 simple NA 15 37510087 37510341 15 37521779 37522036 24998383 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 549 1167 24 552 525 1167 3 6 20 16 0,25 simple NA 15 38566053 38566284 15 38593764 38594008 25001181 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 40620546 40620773 15 40627197 40627458 25005235 12 + - 1 4 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 569 1179 0 568 569 1179 -1 5 2 0 0,833333 simple NA 15 40647405 40647535 15 40651273 40651443 25005241 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 0 721 718 804 83 856 3 6 8 8 0,428571 simple NA 15 41844301 41844535 15 41868324 41868569 25006786 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 4 204 208 817 201 817 -4 1 5 0 0,285714 simple NA 15 42066182 42066434 2 219926160 219926395 19049437 9 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 513 1086 0 518 513 1100 5 3 11 7 0,25 simple NA 15 42421197 42421375 15 42433328 42433509 25007851 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 47 428 425 1042 378 1042 3 6 6 6 0,5 simple NA 15 42650275 42650449 15 93407860 93408020 25008274 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_6_T 6 507 507 754 247 783 0 8 9 7 0,5 simple NA 15 42820691 42820908 15 43672437 43672651 25008576 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_17_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 43274197 43274459 15 43528396 43528591 25009384 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 0 616 614 1067 451 1086 2 2 11 9 0,166667 simple NA 15 44693506 44693733 15 44698498 44698713 25012086 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 191 464 88 191 103 520 0 3 6 12 0,25 simple NA 15 45669869 45670071 15 45878255 45878469 25013908 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 576 787 2 578 209 820 2 5 8 9 0,37037 simple NA 15 46358260 46358451 8 104395994 104396219 19121599 8 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 62 262 261 586 199 586 1 12 14 11 0,489796 simple NA 15 46441335 46441681 15 46452640 46453394 25015349 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T 40 249 237 528 197 555 12 1 21 20 0,0465116 simple NA 15 46807976 46808161 15 47041851 47042046 25016592 8 + - 0 0 1 1 150 143 1 0 1 DEL cancer_singleSample READ_2_T 0 631 631 1237 606 1237 0 9 6 10 0,529412 simple NA 15 48845760 48845860 15 48877511 48877763 25021965 4 - + 0 0 1 1 150 140 1 0 1 DUP cancer_singleSample OV_10_T 0 597 596 803 206 807 1 8 2 3 0,761905 simple NA 15 49103318 49103488 16 69829325 69829497 25134746 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T 624 1260 13 626 611 1260 2 5 5 15 0,333333 simple NA 15 50508416 50508577 15 50516141 50516295 25026088 5 + - 0 0 1 1 123 150 1 0 1 DEL cancer_singleSample LUAD_5_T 749 1028 2 752 276 1086 3 7 6 18 0,368421 simple NA 15 50768768 50768929 15 50769692 50769872 25026552 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 56 263 259 649 203 651 4 7 24 20 0,241379 simple NA 15 52146632 52146843 15 52194396 52194614 25029357 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 52495909 52496175 15 52736367 52736645 25029829 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 320 595 23 315 276 598 -5 13 18 23 0,38806 simple NA 15 54319671 54319802 15 54322415 54322554 25034614 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 55746326 55746577 15 56204023 56204268 25037813 6 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_9_T 603 819 0 605 214 860 2 3 6 3 0,4 simple NA 15 56881350 56881507 15 56918747 56918920 25040216 6 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_6_T 62 270 273 515 209 525 -3 11 19 13 0,407407 simple NA 15 57373831 57373995 15 94821374 94821582 25041323 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T 0 664 664 1150 486 1196 0 6 14 12 0,315789 simple NA 15 57587586 57587790 15 58900489 58900751 25041784 13 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T 390 597 1 391 206 626 1 22 25 23 0,478261 simple NA 15 58380942 58381624 15 58394755 58395709 25043433 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 60565450 60565735 15 60570348 60570618 25047434 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 613 608 1012 399 1031 5 13 18 21 0,4 simple NA 15 63989442 63989652 3 89699369 89699608 19066075 5 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_4_T 835 1248 409 837 411 1272 2 1 4 3 0,222222 simple NA 15 64196253 64196441 15 64197565 64197790 25053902 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_12_T 0 602 600 1104 502 1120 2 9 10 6 0,529412 simple NA 15 68544306 68544550 15 68545627 68545837 25060344 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 69727263 69727457 2 112567699 112567865 19052815 5 - - 2 2 1 1 150 36 1 0 1 INTER cancer_singleSample OV_5_T 36 240 238 483 202 495 2 6 5 53 0,171429 simple NA 15 71021993 71022138 6 155950340 155950480 19096438 4 - - 0 0 1 1 97 150 1 0 1 INTER cancer_singleSample GBM_13_T 136 746 54 136 82 746 0 4 10 13 0,258065 simple NA 15 71162145 71162310 15 71182391 71182553 25064123 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 0 610 608 1026 416 1031 2 2 19 17 0,1 simple NA 15 71312531 71312856 15 71322072 71322664 25064401 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T 24 221 213 496 189 519 8 1 18 22 0,047619 simple NA 15 71583361 71583607 15 71613227 71613483 25065002 20 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 72963909 72964040 3 191475508 191475708 19066913 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_10_T 600 766 0 600 166 774 0 2 13 15 0,125 simple NA 15 74906647 74906875 15 74909472 74909686 25070941 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 604 754 0 605 149 754 1 16 4 4 0,8 simple NA 15 75005393 75005544 15 75173146 75173305 25071096 3 + - 0 0 1 1 106 150 1 0 1 DEL cancer_singleSample BRCA_7_T 0 186 208 629 187 633 -22 3 12 12 0,2 simple NA 15 75201286 75201479 15 75206519 75206658 25071219 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 527 1003 63 522 460 1017 -5 7 15 0 0,482759 simple NA 15 76952876 76953089 15 76955637 76955812 25074272 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 610 906 0 612 294 908 2 4 19 17 0,181818 simple NA 15 77261563 77261821 15 77265712 77265984 25074824 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 0 657 654 788 131 812 3 10 18 6 0,454545 simple NA 15 78406712 78406845 3 144896918 144897174 19069706 3 + - 0 5 1 1 150 134 1 0 1 INTER cancer_singleSample OV_1_T 5 482 482 892 410 894 0 6 9 30 0,235294 simple NA 15 78757069 78757185 15 78804764 78804958 25077329 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_6_T 267 381 35 271 110 422 4 8 8 53 0,207792 simple NA 15 79282364 79282573 15 79286824 79287021 25078066 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 41 438 435 626 188 636 3 7 16 22 0,269231 simple NA 15 81081898 81082067 15 81286691 81286875 25081414 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T 546 850 0 549 301 850 3 5 13 9 0,3125 simple NA 15 81126971 81127186 15 81168822 81169036 25081512 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T 623 742 0 605 120 777 -18 10 35 24 0,253165 simple NA 15 81349558 81349773 15 81359150 81359361 25081881 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 84176471 84176705 15 84206828 84207078 25089905 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 85891138 85891248 15 85891929 85892101 25093438 3 + - 0 0 1 1 46 77 1 0 1 DEL cancer_singleSample LUSC_13_T 3 135 152 651 133 1081 -17 6 18 5 0,342857 simple NA 15 86971071 86971338 15 86973289 86973577 25096012 18 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 623 621 1123 500 1123 2 15 11 9 0,6 simple NA 15 88416888 88417161 15 88418145 88418345 25100615 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 0 610 608 857 247 902 2 4 12 13 0,242424 simple NA 15 88780752 88780984 15 88782950 88783155 25101295 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 230 844 6 230 224 844 0 7 21 11 0,304348 simple NA 15 89751223 89751446 15 89764454 89764619 25102506 12 + - 0 1 1 1 137 138 1 0 1 DEL cancer_singleSample OV_6_T 385 524 21 387 137 553 2 8 10 32 0,275862 simple NA 15 90513874 90514212 15 90840829 90841066 25103427 12 - + 1 1 1 1 145 119 1 0 1 DUP cancer_singleSample OV_5_T 324 598 109 325 215 604 1 5 19 12 0,243902 simple NA 15 90588945 90589161 15 90602381 90602586 25103505 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 3 608 607 777 169 777 1 0 27 15 0 simple NA 15 90668155 90668477 15 90725886 90726200 25103584 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 330 451 0 332 119 451 2 4 18 3 0,275862 simple NA 15 90689249 90689429 15 90700184 90700394 25103620 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 90988422 90988655 15 91459846 91460104 25104007 11 - + 2 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 91055717 91055922 15 91072725 91072917 25104164 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 494 841 0 496 345 841 2 7 27 4 0,311111 simple NA 15 91119644 91119845 15 91131222 91131404 25104276 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 8 230 228 496 220 518 2 9 15 8 0,439024 simple NA 15 91345876 91346053 15 91385230 91385401 25104657 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T 41 257 252 892 211 898 5 5 19 16 0,222222 simple NA 15 93303656 93303845 15 93385721 93385967 25108469 12 - + 0 0 1 1 99 110 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 93407619 93407836 4 150255059 150255299 19081385 15 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_6_T 0 559 559 809 250 812 0 11 7 11 0,55 simple NA 15 94790429 94790640 15 94791569 94791809 25111099 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 0 610 610 802 192 838 0 13 4 2 0,8125 simple NA 15 95326418 95326693 15 95352955 95353253 25112627 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T 6 132 131 335 125 369 1 12 42 26 0,26087 simple NA 15 95543116 95543329 15 95557478 95557702 25113113 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 96638588 96638845 15 96641025 96641263 25116094 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 75 418 438 1045 344 1045 -20 6 24 19 0,218182 simple NA 15 97696228 97696381 15 97699275 97699424 25118683 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_7_T 583 708 0 582 126 762 -1 4 8 6 0,363636 simple NA 15 97764805 97764979 15 97765518 97765707 25118846 6 + - 0 0 1 1 74 150 1 0 1 DEL cancer_singleSample GBM_16_T 0 612 613 694 82 711 -1 NA NA NA NA simple NA 15 98148621 98148906 15 98224838 98225111 25119829 30 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 609 1220 0 611 609 1220 2 21 11 4 0,736842 simple NA 15 99145285 99145528 15 99147117 99147332 25121716 9 + - 0 0 1 1 150 131 1 0 1 DEL cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 99190054 99190237 15 99196734 99196889 25121763 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 99451214 99451443 15 99453070 99453267 25122120 3 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_8_T 421 514 45 431 83 525 10 NA NA NA NA simple NA 15 100022021 100022262 15 100025348 100025588 24943247 17 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 0 603 603 674 71 674 0 NA NA NA NA simple NA 15 101402305 101402597 15 102175870 102176191 24945664 12 - + 0 0 1 1 130 138 1 0 1 DUP cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 15 101528642 101528829 15 101847923 101848150 24945764 12 - + 0 0 1 1 145 144 1 0 1 DUP cancer_singleSample OV_10_T 15 296 298 823 282 843 -2 8 11 11 0,421053 simple NA 15 101736563 101736671 15 101753751 101753855 24945900 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 305440 305628 17 62526402 62526571 25641738 8 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample READ_2_T 430 567 141 433 134 568 3 10 27 20 0,298507 mild_oneoff READ_2_T;chainID=1 16 322005 322200 17 62526632 62526797 25641902 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample READ_2_T 407 686 1 402 280 702 -5 8 30 55 0,158416 mild_oneoff READ_2_T;chainID=1 16 2105909 2106030 17 35859488 35859618 25641240 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 2293277 2293457 16 2729859 2730014 25236227 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 628 718 0 629 89 732 1 2 6 19 0,137931 simple NA 16 2305506 2305685 2 19370710 19370871 19161348 3 + - 1 0 1 1 119 150 1 0 1 INTER cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 2660595 2660752 16 2743485 2743644 25261271 5 - + 0 0 1 1 131 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 2764487 2764707 2 189936655 189936785 19162533 3 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 0 624 624 1056 432 1084 0 4 2 15 0,32 simple NA 16 3141789 3142028 6 36548348 36548592 19599409 3 + - 0 0 1 1 150 108 1 0 1 INTER cancer_singleSample LUSC_5_T 332 944 1 332 331 944 0 1 10 13 0,08 simple NA 16 3420223 3420338 16 3425035 3425172 25364451 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 3650666 3650793 16 3664444 3664597 25374339 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 3787968 3788223 16 3802432 3802726 25374732 37 + - 0 0 1 1 131 150 1 0 1 DEL cancer_singleSample LUSC_13_T 607 803 0 609 194 836 2 5 4 5 0,526316 simple NA 16 3808691 3808868 16 3950734 3950887 25374773 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 129 323 322 761 193 761 1 7 18 27 0,237288 simple NA 16 5195542 5195825 16 5233535 5233729 25404624 6 + + 0 1 1 1 104 113 1 0 1 INV cancer_singleSample OV_5_T 430 1033 112 565 318 1108 135 14 17 20 0,430769 simple NA 16 5623427 5623641 16 20708241 20708464 25433654 8 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_6_T 680 879 0 681 198 904 1 0 6 13 0 mild_oneoff GBM_6_T;chainID=4 16 5646637 5647008 16 7327390 7327756 25434512 19 - - 1 0 1 1 146 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_6_T;chainID=4 16 5846893 5847135 16 5850423 5850712 25442471 22 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 607 605 751 144 755 2 13 2 6 0,764706 simple NA 16 5958553 5958633 16 20708795 20708889 25449068 3 + - 1 2 1 1 132 150 1 0 1 INTRA cancer_singleSample GBM_6_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff GBM_6_T;chainID=4 16 5995994 5996157 16 6249662 6249842 25452043 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T 341 959 0 338 339 959 -3 5 10 11 0,322581 simple NA 16 6255510 6255628 16 6262845 6262993 25470690 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 6561756 6561938 16 6882341 6882492 25495981 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 6564928 6565057 16 6863143 6863300 25496307 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 6669482 6669604 16 6849822 6849947 25503229 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T 0 649 648 1286 637 1286 1 6 12 12 0,333333 simple NA 16 6957601 6957711 16 6958455 6958566 25517677 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 7159562 7159706 2 199856412 199856564 19389010 3 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 659 1293 0 662 631 1297 3 4 7 17 0,25 simple NA 16 7435601 7435849 2 81969776 81970069 19389533 16 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 7435631 7435797 2 81970070 81970262 19389528 6 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 7645467 7645657 16 7657109 7657320 25561705 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 531 893 33 533 360 908 2 9 22 9 0,367347 simple NA 16 8189450 8189661 6 29922496 29922605 19619010 3 - + 0 0 1 1 150 119 1 0 1 INTER cancer_singleSample OV_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 8693658 8693891 16 9154006 9154243 25627022 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 378 651 6 380 271 786 2 4 12 18 0,210526 simple NA 16 8975996 8976166 16 8986340 8986479 25632657 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_2_T 35 399 393 1115 358 1115 6 1 10 16 0,0714286 simple NA 16 9731066 9731295 16 23351893 23352118 25638055 8 - + 0 0 1 1 118 150 1 0 1 INTRA cancer_singleSample OV_3_T 583 707 0 584 123 732 1 7 15 10 0,358974 simple NA 16 10832314 10832531 16 10833183 10833367 25147646 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 11288209 11288486 16 51060852 51061161 25149318 12 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_2_T 617 702 0 617 85 787 0 8 19 22 0,280702 simple NA 16 11826058 11826255 16 11833232 11833417 25150840 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 12105377 12105508 16 14337303 14337425 25152694 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 12185377 12185566 16 12225807 12225959 25153035 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 0 629 620 927 298 940 9 11 4 6 0,6875 simple NA 16 12770764 12770960 16 12863720 12863916 25155788 13 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T 608 1213 0 611 602 1213 3 9 13 9 0,45 simple NA 16 13117078 13117223 16 13118369 13118551 25158287 7 + - 0 0 1 1 135 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 13646071 13646259 16 13646804 13646996 25162507 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 13796357 13796536 2 206628820 206629067 19158610 5 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 169 572 0 167 168 580 -2 4 8 13 0,275862 simple NA 16 14621958 14622101 16 62207762 62207890 25168469 4 - - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_6_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUAD_6_T;chainID=2 16 14638594 14638905 X 133090145 133090385 5233413 7 + + 0 0 1 1 131 150 1 0 1 INTER cancer_singleSample LUAD_6_T 0 618 615 863 245 883 3 9 9 24 0,352941 mild_oneoff LUAD_6_T;chainID=2 16 14639815 14640059 16 58727065 58727266 25168522 6 - + 0 0 1 1 150 128 1 0 1 INTRA cancer_singleSample LUAD_6_T 0 651 650 838 187 838 1 4 21 8 0,216216 mild_oneoff LUAD_6_T;chainID=2 16 15131713 15131838 6 74354076 74354222 19596206 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_6_T 737 1010 303 739 271 1010 2 8 24 11 0,313725 simple NA 16 15261736 15261846 16 18173744 18173864 25179298 3 + - 2 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 15797069 15797285 7 97398977 97399197 19621135 4 - + 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_10_T 20 689 693 947 255 949 -4 4 24 9 0,195122 simple NA 16 15977722 15977932 16 16238395 16238617 25185906 6 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 16128016 16128248 16 16139299 16139583 25186573 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 16943985 16944132 16 26454783 26454937 25195053 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T 636 1179 0 638 541 1179 2 7 9 12 0,4 simple NA 16 17509177 17509446 16 17512247 17512473 25198351 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T 618 1030 0 616 413 1038 -2 5 6 18 0,294118 simple NA 16 17748528 17748680 2 129707625 129707876 19159790 8 - - 0 1 1 1 150 136 1 0 1 INTER cancer_singleSample OV_10_T 12 466 465 516 50 516 1 NA NA NA NA simple NA 16 17754181 17754380 2 129707321 129707569 19159791 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_10_T 272 374 22 273 101 374 1 5 17 8 0,285714 simple NA 16 17921207 17921429 16 24252344 24252576 25201112 10 - + 0 0 1 1 133 150 1 0 1 INTRA cancer_singleSample OV_3_T 0 583 579 1164 579 1164 4 1 12 2 0,125 simple NA 16 19229063 19229220 16 89518133 89518263 25206637 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 669 881 0 671 210 893 2 7 13 23 0,28 simple NA 16 20356205 20356337 16 20359372 20359599 25213403 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 7 617 617 688 71 691 0 NA NA NA NA simple NA 16 20643211 20643461 16 20649246 20649509 25215632 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 610 609 1217 607 1217 1 9 13 17 0,375 simple NA 16 20940071 20940122 6 29853122 29853216 19597387 3 + + 2 0 1 1 34 77 1 0 1 INTER cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 21566634 21566892 16 87943656 87943739 25224274 4 + - 0 2 1 1 118 150 1 0 1 INTRA cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 21567041 21567157 16 87943666 87943760 25224275 5 - + 1 0 1 1 124 150 1 0 1 INTRA cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 21589486 21589692 16 25777323 25777544 25224551 16 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 21672765 21672999 16 21680239 21680426 25224835 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 77 281 280 687 203 711 1 0 0 12 0 simple NA 16 22677068 22677302 19 30452568 30452805 25646043 19 - - 0 0 1 1 143 78 1 0 1 INTER cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 23217746 23218017 9 116924141 116924383 19732237 9 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 0 619 619 666 47 687 0 NA NA NA NA simple NA 16 25170096 25170337 16 26169976 26170196 25249497 5 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_7_T 84 297 297 660 213 682 0 6 36 25 0,164384 simple NA 16 26161704 26161949 16 26167283 26167507 25257150 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 26655824 26656042 4 136513390 136513658 19461250 3 - - 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T 663 1007 0 664 343 1055 1 3 20 22 0,125 simple NA 16 26710171 26710371 16 26711285 26711398 25261990 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 30 285 298 875 256 875 -13 1 17 1 0,1 simple NA 16 26796316 26796568 4 136523485 136523718 19461348 3 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T 0 636 632 730 94 730 4 NA NA NA NA simple NA 16 26885506 26885593 16 26890256 26890441 25263001 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_8_T 0 462 458 542 80 562 4 6 22 13 0,255319 simple NA 16 27318096 27318302 16 31823153 31823341 25265327 14 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 27650460 27650776 8 38013089 38013332 19715055 18 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 28496530 28496632 16 28520795 28520929 25271604 3 + - 1 0 1 1 143 111 1 0 1 DEL cancer_singleSample OV_10_T 165 548 22 182 143 565 17 7 4 10 0,5 simple NA 16 29843797 29843912 16 31563719 31563811 25279400 5 - + 0 0 1 1 92 137 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 30353622 30353903 16 30446197 30446480 25280651 10 + - 2 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_9_T 0 371 367 966 367 966 4 4 15 11 0,235294 simple NA 16 30657479 30657617 16 31075286 31075410 25281468 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 534 737 6 532 204 869 -2 0 22 5 0 simple NA 16 31114457 31114702 16 31117434 31117646 25282535 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T 629 827 0 629 198 856 0 1 5 1 0,25 simple NA 16 31381037 31381257 16 33575347 33575591 25283369 9 + - 0 0 1 1 150 35 1 0 1 INTRA cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 32618418 32618679 16 32620593 32620859 25309045 19 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 608 607 1070 462 1072 1 10 13 8 0,487805 simple NA 16 33411498 33411681 16 33415331 33415496 25322868 4 + - 0 0 1 1 80 97 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 33483638 33483823 16 33487561 33487776 25323499 7 - + 0 0 1 1 141 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 33610998 33611232 16 33612457 33612671 25325191 9 + - 0 0 1 1 110 91 1 0 1 DEL cancer_singleSample LUSC_13_T 580 862 36 578 283 889 -2 1 2 2 0,333333 simple NA 16 33755447 33755549 5 161728351 161728534 19581433 4 - + 0 0 1 1 83 150 1 0 1 INTER cancer_singleSample LUSC_13_T 428 532 10 433 99 545 5 6 116 5 0,0902256 simple NA 16 34646197 34646384 16 34655128 34655358 25366881 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 0 633 632 1074 441 1149 1 7 36 27 0,181818 simple NA 16 46559545 46559834 2 162423808 162424093 19382552 14 - + 0 0 1 1 150 112 1 0 1 INTER cancer_singleSample LUSC_13_T 608 914 0 611 303 917 3 7 24 19 0,245614 simple NA 16 46927929 46928093 16 52322259 52322375 25379197 4 + - 0 0 1 1 140 150 1 0 1 INTRA cancer_singleSample GBM_7_T 581 1068 0 581 487 1084 0 5 6 9 0,4 mild_oneoff GBM_7_T;chainID=1 16 47053727 47053922 16 47060500 47060722 25379592 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 607 900 0 610 290 905 3 10 24 16 0,333333 simple NA 16 47577506 47577702 16 47583323 47583519 25381922 3 - + 0 0 1 1 118 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 47584697 47585102 16 47594555 47594881 25381951 3 - - 0 0 1 1 110 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 48014053 48014296 16 48014745 48015006 25385215 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 620 1230 3 608 606 1230 -12 6 17 13 0,285714 simple NA 16 48383571 48383827 16 48496450 48496694 25387065 9 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T 20 293 288 891 268 891 5 4 11 23 0,190476 simple NA 16 48814593 48814870 16 48818680 48818927 25389485 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 7 166 164 774 157 775 2 10 18 17 0,363636 simple NA 16 49413881 49414079 X 117649765 117649939 5607673 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_6_T 41 509 507 1030 466 1030 2 4 17 5 0,266667 simple NA 16 49595615 49595790 16 49601053 49601236 25393735 6 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 49686141 49686396 20 60655329 60655576 25648884 11 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T 461 814 24 464 350 827 3 8 8 31 0,290909 simple NA 16 49688498 49688712 20 60665688 60665872 25648885 8 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T 445 601 10 447 154 642 2 6 7 10 0,413793 simple NA 16 49835755 49835902 16 50448400 50448552 25394245 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 291 525 19 291 234 536 0 12 21 0 0,533333 simple NA 16 50703945 50704256 16 50706357 50706645 25397229 8 - + 0 0 1 1 150 143 1 0 1 DUP cancer_singleSample LUAD_3_T 236 374 2 226 139 377 -10 2 7 20 0,129032 simple NA 16 51152599 51152832 16 51155647 51155915 25399354 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 607 604 836 229 854 3 11 10 13 0,488889 simple NA 16 51241229 51241478 16 51243043 51243257 25399745 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 607 867 0 609 258 868 2 7 18 12 0,318182 simple NA 16 51278413 51278705 4 57258487 57258756 19572919 14 + - 0 0 1 1 150 146 1 0 1 INTER cancer_singleSample LUAD_3_T 541 966 0 546 420 966 5 7 20 20 0,259259 simple NA 16 52267224 52267420 16 52278109 52278335 25407248 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_7_T 594 1159 0 595 564 1165 1 1 0 4 0,333333 mild_oneoff GBM_7_T;chainID=1 16 52311048 52311181 16 52323256 52323442 25407515 4 + - 0 1 1 1 139 139 1 0 1 DEL cancer_singleSample GBM_7_T 0 584 582 893 309 921 2 2 3 3 0,4 mild_oneoff GBM_7_T;chainID=1 16 52323009 52323227 16 52331458 52331634 25407568 11 + - 0 0 1 1 140 117 1 0 1 DEL cancer_singleSample GBM_7_T 0 584 584 665 81 667 0 NA NA NA NA mild_oneoff GBM_7_T;chainID=1 16 52642307 52642512 16 52646999 52647257 25409926 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 159 780 57 163 102 780 4 4 16 22 0,173913 simple NA 16 52897741 52898023 16 52911968 52912231 25412019 4 - + 0 0 1 1 150 119 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 53174586 53174834 16 53237682 53237908 25414017 5 + - 0 0 1 1 150 31 1 0 1 DEL cancer_singleSample LUSC_2_T 351 914 68 353 283 916 2 3 15 12 0,181818 simple NA 16 53325433 53325586 16 53334366 53334629 25415328 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 53545912 53546072 16 70511716 70511866 25416432 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 53598985 53599148 16 53599876 53600085 25416652 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 55066360 55066528 16 75121782 75121972 25424923 12 - + 0 0 1 1 148 147 1 0 1 INTRA cancer_singleSample OV_3_T 404 603 23 408 195 726 4 4 11 8 0,296296 simple NA 16 55317300 55317553 16 84827479 84827713 25426337 3 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 55547159 55547345 16 57445229 57445459 25427691 4 + - 0 0 1 1 150 119 1 0 1 INTRA cancer_singleSample GBM_7_T 406 991 0 407 406 991 1 2 3 3 0,4 simple NA 16 56114792 56114910 16 87113833 87113954 25432810 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 56173591 56173805 16 56188637 56188897 25433333 10 - + 0 1 1 1 150 109 1 0 1 DUP cancer_singleSample OV_4_T 13 536 531 875 339 908 5 4 91 71 0,0470588 simple NA 16 56698154 56698410 16 56702804 56703035 25435451 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 606 1103 0 608 495 1128 2 11 15 22 0,372881 simple NA 16 57067544 57067661 16 57069254 57069355 25437095 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_12_T 264 881 37 265 227 885 1 0 0 0 0 simple NA 16 57220170 57220400 16 57230252 57230475 25437523 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 58376158 58376386 16 58686384 58686651 25441915 6 - + 4 2 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 614 841 35 613 228 921 -1 5 11 12 0,30303 simple NA 16 58678182 58678369 X 134325099 134325315 5608311 3 + + 2 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_6_T 253 840 18 256 235 840 3 4 7 16 0,258065 mild_oneoff LUAD_6_T;chainID=2 16 58725971 58726114 X 119109268 119109487 5608313 5 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_6_T 13 312 309 601 289 632 3 11 10 17 0,44898 mild_oneoff LUAD_6_T;chainID=2 16 59707246 59707522 16 59708068 59708321 25450025 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 9 345 343 581 236 793 2 10 6 5 0,645161 simple NA 16 60598967 60599095 16 60603807 60603932 25456731 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 61504292 61504524 8 73783989 73784187 19728698 8 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 0 672 660 910 238 923 12 0 21 31 0 mild_oneoff LUSC_11_T;chainID=2 16 61606721 61606866 16 61609795 61610003 25463798 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 333 454 462 801 122 833 -8 6 17 17 0,26087 simple NA 16 63497526 63497796 16 63540839 63541107 25478485 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 624 842 0 610 219 842 -14 4 23 15 0,173913 simple NA 16 63993255 63993519 16 63995547 63995858 25482096 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 601 681 0 610 71 716 9 5 2 24 0,277778 simple NA 16 64035265 64035623 16 64044286 64045586 25482406 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 64380602 64380778 8 73784025 73784224 19728974 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_11_T;chainID=2 16 65059309 65059446 16 65063046 65063239 25491493 5 + - 0 0 1 1 118 150 1 0 1 DEL cancer_singleSample OV_8_T 590 846 2 593 253 873 3 6 9 3 0,5 simple NA 16 65446992 65447276 16 69228482 69228744 25494476 10 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 535 532 902 367 939 3 13 19 19 0,40625 simple NA 16 66310726 66310979 16 66317193 66317438 25501697 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 66371952 66372181 16 66379348 66379501 25502043 9 + - 0 0 1 1 137 140 1 0 1 DEL cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 67104083 67104248 16 67114576 67114797 25505058 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 0 608 610 742 133 791 -2 4 4 5 0,470588 simple NA 16 67152683 67152909 16 67786071 67786348 25505355 12 - + 0 1 1 1 144 140 1 0 1 DUP cancer_singleSample OV_6_T 0 133 138 603 134 605 -5 1 1 9 0,166667 simple NA 16 68221758 68221892 16 68327220 68327329 25509938 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 27 210 208 915 181 915 2 3 6 9 0,285714 simple NA 16 68932333 68932516 4 92869506 92869760 19574761 7 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_7_T 515 704 12 516 188 748 1 7 23 23 0,233333 simple NA 16 70078009 70078199 16 70294713 70294894 25521388 7 - + 0 0 1 1 75 150 1 0 1 DUP cancer_singleSample OV_3_T 398 989 19 400 379 989 2 13 13 9 0,541667 simple NA 16 70422021 70422167 3 143003474 143003682 19455555 11 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 72551937 72552155 16 73027339 73027515 25536830 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 0 317 317 751 317 797 0 2 7 13 0,166667 simple NA 16 72582729 72582942 16 72585302 72585538 25537054 11 + - 0 0 1 1 63 150 1 0 1 DEL cancer_singleSample LUSC_13_T 3 590 588 751 161 783 2 11 20 18 0,366667 simple NA 16 72870851 72871082 16 72939372 72939614 25538901 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 73188058 73188195 16 73189251 73189420 25540321 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 730 849 0 734 115 869 4 6 19 10 0,292683 simple NA 16 74394375 74394639 16 74905085 74905329 25548874 11 - + 1 2 1 1 45 120 1 0 1 DUP cancer_singleSample OV_5_T 587 879 0 590 289 891 3 7 19 10 0,325581 simple NA 16 74396336 74396619 16 75418339 75418528 25548902 5 + - 0 0 1 1 50 150 1 0 1 INTRA cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 74914683 74914855 16 74924536 74924747 25551555 6 - + 0 2 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 0 604 602 675 71 707 2 8 28 9 0,301887 simple NA 16 75066317 75066546 16 75122480 75122735 25552473 23 + - 1 0 1 1 150 145 1 0 1 DEL cancer_singleSample OV_3_T 0 577 572 901 324 904 5 7 10 9 0,424242 simple NA 16 75242038 75242198 16 75262663 75262925 25553340 4 - - 0 1 1 1 130 150 1 0 1 INV cancer_singleSample LUAD_2_T 464 779 6 465 314 791 1 3 14 8 0,214286 simple NA 16 75373724 75373921 16 76038120 76038299 25553862 4 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 75916972 75917237 16 75920901 75921186 25556756 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 610 890 0 610 280 900 0 4 26 12 0,173913 simple NA 16 77067723 77067842 16 77069886 77070024 25567156 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 0 632 629 839 207 869 3 6 19 15 0,26087 simple NA 16 77375946 77376175 16 77426564 77426707 25569320 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 60 509 511 1117 450 1117 -2 9 18 16 0,346154 simple NA 16 78238293 78238476 16 78242076 78242284 25575428 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample COAD_1_T 386 756 1 388 368 756 2 7 22 24 0,233333 simple NA 16 78693727 78693926 16 78714638 78714871 25578625 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 78752888 78753049 16 79145553 79145755 25579085 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 12 109 106 755 94 755 3 3 18 16 0,15 simple NA 16 78775444 78775587 16 78960450 78960589 25579306 4 + - 0 0 1 1 127 150 1 0 1 DEL cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 78781101 78781226 16 78916040 78916237 25579344 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 4 460 459 890 430 891 1 5 12 16 0,263158 simple NA 16 78833150 78833275 16 78844496 78844638 25579697 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T 6 456 483 1098 451 1098 -27 4 8 18 0,235294 simple NA 16 78978783 78978981 16 78999377 78999577 25580749 8 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T 0 609 493 732 123 789 116 11 10 0 0,6875 simple NA 16 79101809 79101964 16 79114919 79115087 25581547 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample COAD_1_T 0 629 639 1169 531 1169 -10 7 8 9 0,451613 simple NA 16 79108651 79108875 16 79109344 79109542 25581590 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T 20 588 597 726 130 726 -9 2 23 17 0,0909091 simple NA 16 79139050 79139279 16 79222456 79222676 25581792 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 632 757 0 631 126 757 -1 4 11 15 0,235294 simple NA 16 79926168 79926282 16 79926682 79926817 25587248 3 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 0 586 589 761 173 762 -3 13 13 9 0,541667 simple NA 16 79935242 79935408 16 79937839 79938079 25587331 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 343 692 0 346 343 752 3 7 8 13 0,4 simple NA 16 79935862 79936080 8 98585249 98585412 19730143 4 - + 0 2 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 80077443 80077623 16 80105841 80105964 25588659 4 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 80409937 80410218 16 80424320 80424597 25591625 26 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 384 582 0 386 196 600 2 15 18 17 0,461538 simple NA 16 81356373 81356612 16 83405053 83405307 25597186 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_8_T 638 897 0 643 254 960 5 8 26 30 0,222222 simple NA 16 82778750 82779029 16 87477933 87478228 25606748 18 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_8_T 19 420 418 976 399 982 2 12 28 32 0,285714 simple NA 16 83658689 83658943 16 85964178 85964487 25614513 17 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_8_T 296 706 20 301 276 737 5 10 34 23 0,25974 simple NA 16 83974453 83974711 16 87638093 87638330 25616386 12 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_8_T 468 852 26 471 381 856 3 13 45 35 0,245283 simple NA 16 83985112 83985492 16 84166178 84166404 25616414 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 84936214 84936389 7 134715305 134715471 19712492 5 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_7_T 0 624 623 704 80 811 1 5 1 19 0,333333 simple NA 16 84950021 84950255 7 134714942 134715156 19712493 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_7_T 0 608 608 853 245 922 0 2 15 21 0,1 simple NA 16 85492250 85492531 16 85514359 85514530 25622650 6 - + 4 1 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_5_T 470 1089 0 470 470 1089 0 1 3 0 0,4 simple NA 16 85502396 85502558 8 102404565 102404745 19730715 4 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_11_T 610 658 0 618 40 661 8 NA NA NA NA simple NA 16 85689859 85690067 16 85730017 85730259 25622961 4 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 33 439 438 882 405 882 1 4 26 23 0,140351 simple NA 16 85816606 85816786 16 85818833 85819016 25623300 5 - + 0 0 1 1 108 150 1 0 1 DUP cancer_singleSample BRCA_5_T 550 767 111 551 216 767 1 2 14 8 0,153846 simple NA 16 87215754 87216001 16 87216841 87217091 25627755 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 358 867 33 362 325 871 4 10 29 32 0,246914 simple NA 16 87277099 87277359 16 87365942 87366175 25627877 5 - + 4 3 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 426 950 12 431 414 953 5 13 17 16 0,440678 simple NA 16 88988563 88988698 16 88992171 88992382 25631484 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 23 204 199 873 176 873 5 1 1 3 0,333333 simple NA 16 89423746 89423993 16 89485829 89486096 25632145 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 0 611 608 702 91 703 3 NA NA NA NA simple NA 16 89429813 89429896 2 137851212 137851311 19392696 3 + + 1 0 1 1 33 120 1 0 1 INTER cancer_singleSample OV_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 16 89809691 89809869 16 89824622 89824834 25632703 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 34 613 609 878 265 879 4 7 30 27 0,197183 simple NA 17 698405 698597 3 52670595 52670800 19816427 4 - + 0 0 1 1 150 125 1 0 1 INTER cancer_singleSample BRCA_5_T 0 613 626 680 55 698 -13 NA NA NA NA simple NA 17 1284312 1284526 17 1287544 1287746 25656388 7 + - 0 0 1 1 147 150 1 0 1 DEL cancer_singleSample LUAD_5_T 613 691 0 615 76 693 2 NA NA NA NA simple NA 17 1367931 1368217 19 14806394 14806705 25852794 13 + - 0 0 1 1 143 150 1 0 1 INTER cancer_singleSample BRCA_1_T 608 788 0 610 178 795 2 16 8 21 0,52459 simple NA 17 1628661 1628914 8 29748214 29748473 19893065 6 - - 5 0 1 1 144 150 1 0 1 INTER cancer_singleSample OV_11_T 0 615 615 996 381 1011 0 2 1 7 0,333333 simple NA 17 1735924 1736053 17 2881062 2881320 25668685 8 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 1995367 1995489 9 124406597 124406725 19905945 3 + + 0 3 1 1 136 35 1 0 1 INTER cancer_singleSample BRCA_3_T 8 636 460 829 193 832 176 0 19 32 0 simple NA 17 2087209 2087467 17 2840798 2841129 25674994 15 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_8_T 213 824 1 215 212 824 2 5 32 45 0,114943 simple NA 17 2452054 2452307 17 2845746 2845959 25727808 6 + - 2 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_11_T 29 455 452 1030 423 1057 3 8 10 22 0,333333 simple NA 17 2588966 2589150 5 39212606 39212777 19843336 3 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 399 524 41 401 123 542 2 4 16 19 0,186047 simple NA 17 3071912 3072054 17 3074891 3075156 25741250 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 3 130 127 610 124 997 3 1 10 4 0,125 simple NA 17 3862461 3862625 8 130948055 130948276 19902141 5 - - 2 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T 630 980 0 630 350 989 0 6 7 30 0,244898 simple NA 17 4596642 4596753 8 126545443 126545586 19902687 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 715 791 0 717 74 791 2 NA NA NA NA simple NA 17 4960469 4960766 2 86085633 86085807 19795416 8 - + 0 0 1 1 120 134 1 0 1 INTER cancer_singleSample LUAD_1_T 330 485 3 334 151 487 4 9 10 13 0,439024 simple NA 17 5173123 5173207 17 15192589 15192726 25790351 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_1_T 0 85 82 481 82 656 3 0 13 1 0 extreme_oneoff LUAD_1_T;chainID=2 17 5234872 5235096 17 15224741 15224995 25792162 4 + - 0 0 1 1 121 150 1 0 1 INTRA cancer_singleSample LUAD_1_T 537 766 0 537 229 779 0 3 10 7 0,26087 extreme_oneoff LUAD_1_T;chainID=2 17 5261899 5262189 17 16162486 16162769 25793151 14 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_8_T 1 299 292 512 213 963 7 7 32 31 0,181818 simple NA 17 5602173 5602445 17 5702034 5702330 25802139 17 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_8_T 347 694 0 349 345 710 2 12 30 31 0,282353 simple NA 17 5818166 5818369 17 5837484 5837743 25806553 8 - + 0 1 1 1 150 80 1 0 1 DUP cancer_singleSample BRCA_9_T 78 301 302 696 224 696 -1 17 12 54 0,34 simple NA 17 6078537 6078679 17 6080485 6080635 25812245 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 0 669 666 955 286 966 3 13 5 5 0,722222 simple NA 17 6100131 6100328 17 6127458 6127703 25812710 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 7127709 7127846 17 7467791 7467895 25838453 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 0 632 631 755 123 881 1 5 8 28 0,217391 simple NA 17 8644630 8644940 17 8647434 8647709 25848973 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 599 595 1083 484 1083 4 7 1 6 0,666667 simple NA 17 9810108 9810210 17 9810563 9810669 25851419 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 155 526 21 157 134 526 2 5 16 8 0,294118 simple NA 17 10737986 10738158 17 10740372 10740561 25651664 5 - + 0 0 1 1 137 150 1 0 1 DUP cancer_singleSample BRCA_9_T 56 151 151 645 95 695 0 8 24 8 0,333333 simple NA 17 11665758 11666003 17 11668129 11668340 25653767 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 0 604 604 884 280 915 0 6 6 3 0,571429 simple NA 17 11717301 11717421 17 11719112 11719227 25653896 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 11908633 11908862 8 71002364 71002540 19892696 8 + - 1 1 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 12204413 12204658 17 21970419 21970684 25654820 7 + - 0 0 1 1 132 150 1 0 1 INTRA cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 12391575 12391861 8 74393597 74393873 19892738 14 - - 1 3 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 13380866 13381164 2 104610499 104610757 19757595 8 + - 0 0 1 1 144 150 1 0 1 INTER cancer_singleSample LUAD_1_T 584 629 0 584 45 642 0 NA NA NA NA extreme_oneoff LUAD_1_T;chainID=2 17 13497849 13498008 8 67916368 67916495 19892834 3 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 14148681 14148853 2 124328944 124329102 19757783 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_1_T 7 85 84 684 77 684 1 0 4 8 0 extreme_oneoff LUAD_1_T;chainID=2 17 14288010 14288280 3 123594768 123595012 19804560 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 0 611 609 924 313 941 2 4 7 22 0,216216 simple NA 17 14355131 14355364 17 21248423 21248665 25660183 15 + - 0 0 1 1 150 146 1 0 1 INTRA cancer_singleSample LUAD_1_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff LUAD_1_T;chainID=2 17 14676724 14676991 2 88931961 88932190 19757930 9 - + 1 0 1 1 146 150 1 0 1 INTER cancer_singleSample LUAD_1_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff LUAD_1_T;chainID=2 17 14768034 14768264 17 30736740 30736938 25661305 12 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_8_T 159 883 0 164 159 883 5 4 20 16 0,181818 simple NA 17 15187460 15187723 2 146201246 146201490 19758025 5 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 308 586 584 1089 276 1100 2 5 12 13 0,285714 simple NA 17 15203971 15204198 2 146206636 146206888 19758049 7 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 390 998 16 392 374 998 2 12 18 10 0,461538 simple NA 17 15272955 15273201 17 16587537 16587824 25662471 8 + - 0 0 1 1 141 74 1 0 1 INTRA cancer_singleSample LUAD_1_T 584 698 0 585 113 698 1 4 14 30 0,153846 extreme_oneoff LUAD_1_T;chainID=2 17 15274207 15274472 2 124330365 124330612 19758070 5 - - 0 0 1 1 123 150 1 0 1 INTER cancer_singleSample LUAD_1_T 0 582 582 1175 582 1175 0 5 2 4 0,625 extreme_oneoff LUAD_1_T;chainID=2 17 15372418 15372664 2 88930900 88931136 19758094 9 + - 1 0 1 1 139 150 1 0 1 INTER cancer_singleSample LUAD_1_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff LUAD_1_T;chainID=2 17 15379339 15379580 17 15686959 15687205 25662658 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_8_T 15 459 463 679 217 699 -4 16 34 35 0,316832 simple NA 17 15464152 15464342 17 16069963 16070172 25662915 16 + - 0 0 1 1 47 150 1 0 1 DEL cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 15737992 15738207 17 21251465 21251671 25663849 10 - - 0 0 1 1 73 134 1 0 1 INTRA cancer_singleSample LUAD_1_T 0 654 652 1091 437 1094 2 2 24 30 0,0689655 extreme_oneoff LUAD_1_T;chainID=2 17 15847374 15847556 17 15956101 15956278 25664155 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T 1 467 472 864 393 864 -5 2 2 20 0,153846 simple NA 17 15867193 15867484 17 22127631 22127868 25664168 7 + - 0 0 1 1 141 98 1 0 1 INTRA cancer_singleSample LUAD_1_T 0 601 600 1177 576 1177 1 1 14 0 0,125 simple NA 17 16176685 16176854 17 16177528 16177719 25664973 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 646 998 4 648 350 1062 2 2 5 10 0,210526 simple NA 17 17136929 17137049 17 17147876 17148048 25668414 6 + - 0 0 1 1 144 150 1 0 1 DEL cancer_singleSample OV_8_T 857 909 50 861 48 953 4 NA NA NA NA simple NA 17 18879667 18879868 17 18886701 18886903 25671301 5 - + 0 0 1 1 150 114 1 0 1 DUP cancer_singleSample LUAD_5_T 0 649 646 953 304 979 3 2 14 7 0,16 simple NA 17 19543584 19543727 7 138626671 138626917 19853881 4 + - 0 0 1 1 45 150 1 0 1 INTER cancer_singleSample GBM_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 19662916 19663210 17 19668712 19668924 25672847 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 439 953 35 439 404 961 0 5 14 14 0,263158 simple NA 17 19726874 19726960 17 19838824 19838924 25672939 4 - + 1 0 1 1 137 150 1 0 1 DUP cancer_singleSample OV_3_T 40 424 418 792 368 792 6 3 14 4 0,25 simple NA 17 20886466 20886610 17 22027610 22027751 25675014 6 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 25 340 339 488 148 496 1 3 1 25 0,1875 simple NA 17 20941141 20941422 3 109500574 109500860 19805848 13 + - 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_10_T 0 601 599 1043 442 1047 2 1 2 37 0,0487805 simple NA 17 21183811 21184006 17 21213416 21213624 25675386 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 588 714 0 588 126 729 0 8 15 28 0,271186 simple NA 17 21216464 21216731 3 156271131 156271536 19805946 12 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise LUSC_5_T;chainID=1 17 21232458 21232702 9 104487217 104487431 19906129 9 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 21251312 21251541 2 124331647 124331904 19760102 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_1_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff LUAD_1_T;chainID=2 17 21402352 21402596 2 86034683 86034949 19760134 12 + - 0 0 1 1 137 145 1 0 1 INTER cancer_singleSample LUAD_1_T 11 432 431 664 232 672 1 6 14 12 0,315789 simple NA 17 21489756 21490086 5 51403207 51403535 19837856 25 + + 0 0 1 1 124 142 1 0 1 INTER cancer_singleSample LUAD_3_T 0 594 590 1052 458 1123 4 8 8 7 0,516129 simple NA 17 21503582 21503712 17 21799388 21799510 25677135 4 - - 4 0 1 1 150 127 1 0 1 INV cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 21919024 21919268 17 21921119 21921555 25678686 21 + - 0 0 1 1 134 132 1 0 1 DEL cancer_singleSample LUSC_5_T 643 776 0 646 130 819 3 2 45 18 0,0597015 simple NA 17 21941244 21941527 17 21945796 21946064 25678728 16 + - 0 0 1 1 126 134 1 0 1 DEL cancer_singleSample LUSC_13_T 477 708 7 484 224 724 7 1 12 9 0,0869565 simple NA 17 21960860 21961059 17 21961868 21962049 25678748 10 + - 1 1 1 1 150 139 1 0 1 DEL cancer_singleSample LUSC_13_T 496 679 12 492 184 723 -4 4 11 11 0,266667 simple NA 17 22086568 22086738 17 37274655 37274823 25678945 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_10_T;chainID=1 17 22140383 22140622 3 109368865 109369113 19806387 7 - + 0 0 1 1 150 97 1 0 1 INTER cancer_singleSample LUSC_10_T 21 312 329 432 104 443 -17 6 11 28 0,235294 mild_stepwise LUSC_10_T;chainID=1 17 22148846 22149087 17 37352470 37352734 25679142 5 + - 0 0 1 1 102 150 1 0 1 INTRA cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_10_T;chainID=1 17 25282563 25282721 17 48050289 48050455 25731310 3 - - 0 0 1 1 110 122 1 0 1 INTRA cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 25464136 25464292 17 25467406 25467547 25731736 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 25673648 25673897 17 25728347 25728623 25732163 16 - + 0 0 1 1 146 148 1 0 1 DUP cancer_singleSample OV_10_T 136 715 47 138 89 715 2 6 4 2 0,666667 simple NA 17 25802430 25802668 17 40625307 40625513 25732377 7 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_7_T 3 356 354 701 345 721 2 4 9 5 0,363636 extreme_stepwise GBM_7_T;chainID=2 17 26200401 26200659 17 26203570 26203866 25733045 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 26432427 26432593 17 40679051 40679243 25733513 8 + - 0 0 1 1 148 150 1 0 1 INTRA cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 17 26449557 26449726 17 36812971 36813169 25733545 3 + - 0 1 1 1 150 109 1 0 1 INTRA cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 26468030 26468227 17 46125852 46125930 25733596 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 17 27088555 27088799 2 68152274 68152419 19788843 11 - - 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample OV_5_T 6 559 555 756 197 781 4 17 43 31 0,314815 mild_stepwise OV_5_T;chainID=4 17 27193904 27194136 17 41986136 41986360 25734490 8 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 27231163 27231349 17 70205823 70206017 25734555 10 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample READ_1_T 292 574 2 296 278 609 4 13 11 13 0,52 simple NA 17 27239764 27239963 2 68152797 68152985 19788882 9 + - 2 0 1 1 149 150 1 0 1 INTER cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_5_T;chainID=4 17 27532682 27533022 17 64509241 64509504 25734832 19 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_5_T 616 1184 0 617 567 1184 1 12 14 18 0,428571 simple NA 17 28105967 28106165 17 28492810 28493064 25735822 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_9_T 11 574 564 802 228 875 10 3 9 14 0,206897 simple NA 17 28134201 28134342 17 53834644 53834832 25735873 4 - - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 28314456 28314611 17 31495541 31495763 25736188 8 + - 1 0 1 1 103 150 1 0 1 INTRA cancer_singleSample OV_5_T 400 826 43 401 357 844 1 6 27 16 0,218182 simple NA 17 28347657 28347919 17 29550589 29550827 25736248 7 - + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 28370133 28370311 17 58359503 58359692 25736274 8 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 29133294 29133532 17 29565887 29566153 25738045 12 + - 0 0 1 1 150 140 1 0 1 DEL cancer_singleSample GBM_7_T 542 611 0 543 68 620 1 NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 17 29253342 29253628 17 29484442 29484727 25738219 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 336 727 10 336 326 727 0 16 7 12 0,627451 simple NA 17 29559910 29560054 17 74980090 74980192 25738880 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_7_T 662 1246 24 665 581 1246 3 6 4 4 0,6 extreme_stepwise GBM_7_T;chainID=2 17 29618420 29618608 17 29708762 29709013 25739067 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_7_T 609 1249 0 610 609 1249 1 1 13 17 0,0625 simple NA 17 29653867 29654015 17 29662336 29662466 25739189 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 29770907 29771104 17 75832459 75832554 25739535 3 + - 0 0 1 1 150 100 1 0 1 INTRA cancer_singleSample GBM_7_T 186 616 614 828 212 851 2 3 3 4 0,461538 extreme_stepwise GBM_7_T;chainID=2 17 29771563 29771719 17 30208129 30208299 25739537 5 - + 1 0 1 1 146 129 1 0 1 DUP cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 17 29773539 29773636 17 48234054 48234269 25739547 6 - - 0 0 1 1 144 150 1 0 1 INTRA cancer_singleSample GBM_7_T 265 787 174 265 91 822 0 2 4 19 0,148148 extreme_stepwise GBM_7_T;chainID=2 17 30190782 30191022 17 30216088 30216311 25740343 7 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 30209424 30209649 17 31513726 31513898 25740413 8 - + 0 0 1 1 129 109 1 0 1 INTRA cancer_singleSample GBM_7_T 554 967 0 554 413 967 0 5 6 6 0,454545 extreme_stepwise GBM_7_T;chainID=2 17 30582704 30582995 17 30612423 30612701 25741023 16 + - 0 0 1 1 100 150 1 0 1 DEL cancer_singleSample LUSC_8_T 608 955 0 610 345 956 2 12 27 17 0,352941 simple NA 17 30702950 30703187 17 38594347 38594537 25741202 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 30872810 30873034 17 30875983 30876209 25741567 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 389 530 3 392 138 543 3 5 10 18 0,263158 simple NA 17 30954243 30954474 17 31001527 31001742 25741768 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_8_T 541 815 17 518 275 831 -23 10 31 21 0,277778 simple NA 17 31388896 31388952 7 54974788 54974969 19886033 3 - - 0 0 1 1 69 147 1 0 1 INTER cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 17 32533524 32533784 17 33825960 33826194 25745986 12 - - 0 0 1 1 142 121 1 0 1 INTRA cancer_singleSample GBM_7_T 0 285 282 860 282 860 3 5 5 14 0,344828 extreme_stepwise GBM_7_T;chainID=2 17 33707324 33707560 17 33715613 33715863 25748678 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 15 150 146 308 131 523 4 18 2 10 0,75 simple NA 17 33921195 33921409 17 48302032 48302261 25749035 7 - - 0 0 1 1 150 107 1 0 1 INTRA cancer_singleSample GBM_7_T 0 578 576 1168 576 1168 2 2 2 8 0,285714 extreme_stepwise GBM_7_T;chainID=2 17 34042421 34042608 17 66377138 66377388 25749283 7 - + 0 0 1 1 136 150 1 0 1 INTRA cancer_singleSample OV_10_T 388 643 14 388 255 667 0 8 2 21 0,410256 simple NA 17 34053379 34053607 17 34138123 34138262 25749295 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_16_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 34174914 34175164 17 34227467 34227616 25749402 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 34364416 34364525 17 74607041 74607197 25749826 3 - + 1 0 1 1 112 38 1 0 1 INTRA cancer_singleSample GBM_7_T 355 644 43 359 285 692 4 5 24 30 0,15625 extreme_stepwise GBM_7_T;chainID=2 17 34876878 34877169 17 34880814 34881100 25754642 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 611 609 797 186 803 2 11 13 9 0,5 simple NA 17 34897203 34897324 17 36122861 36122937 25754657 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_7_T 545 979 1 546 433 982 1 2 7 7 0,222222 extreme_stepwise GBM_7_T;chainID=2 17 34916108 34916345 17 35524931 35525162 25754684 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T 30 371 368 645 274 645 3 2 21 28 0,0754717 simple NA 17 34970535 34970726 17 35357812 35357987 25754739 4 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 35618916 35619160 7 54806138 54806345 19886642 8 - - 0 0 1 1 141 150 1 0 1 INTER cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 17 36090504 36090710 7 55061452 55061655 19886702 6 - + 0 0 1 1 145 127 1 0 1 INTER cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise GBM_7_T;chainID=2 17 37334054 37334243 17 37344656 37344840 25760335 5 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_10_T;chainID=1 17 38071674 38071981 17 38097304 38097585 25761431 4 + - 0 0 1 1 150 134 1 0 1 DEL cancer_singleSample LUAD_5_T 228 837 0 228 228 845 0 5 17 9 0,277778 simple NA 17 38168592 38168856 17 38346291 38346539 25761508 9 - + 2 2 1 1 133 150 1 0 1 DUP cancer_singleSample OV_5_T 0 608 603 973 365 975 5 4 5 11 0,333333 simple NA 17 38637034 38637274 17 38710032 38710282 25761969 10 - - 0 1 1 1 148 147 1 0 1 INV cancer_singleSample OV_6_T 69 454 458 649 192 665 -4 5 14 11 0,285714 simple NA 17 38836602 38836834 5 121450754 121450993 19845879 7 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T 367 536 0 368 168 605 1 12 28 19 0,338028 simple NA 17 39169196 39169378 17 62675806 62676024 25763026 7 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff READ_1_T;chainID=1 17 39172635 39172829 17 61203708 61203904 25763040 9 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample READ_1_T 0 620 623 702 80 728 -3 10 17 24 0,327869 mild_oneoff READ_1_T;chainID=1 17 41400302 41400396 17 43501084 43501254 25766464 3 + - 3 0 1 1 142 116 1 0 1 INTRA cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 41589304 41589480 17 41594853 41595104 25766819 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 41621666 41621811 2 43110619 43110794 19793244 4 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_16_T 90 367 371 999 278 999 -4 6 24 21 0,210526 simple NA 17 42029439 42029649 17 42032310 42032515 25767441 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 42173031 42173266 17 42183213 42183382 25767615 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 311 485 0 312 173 493 1 12 13 10 0,510638 simple NA 17 42242700 42242942 2 85954686 85954831 19793375 6 - - 0 0 1 1 134 150 1 0 1 INTER cancer_singleSample BRCA_4_T 85 501 496 537 36 637 5 4 19 25 0,153846 simple NA 17 44803251 44803459 17 44804984 44805271 25774615 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 609 874 0 611 263 888 2 6 21 21 0,222222 simple NA 17 46146970 46147116 17 46176086 46176232 25776688 5 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_7_T 39 80 80 655 41 655 0 10 8 0 0,714286 extreme_stepwise GBM_7_T;chainID=2 17 46341909 46342159 17 46344946 46345185 25777102 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 606 699 0 611 88 699 5 NA NA NA NA simple NA 17 46348876 46349065 17 46360167 46360852 25777117 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T 394 954 12 395 382 992 1 0 1 13 0 simple NA 17 46399526 46399756 17 48220185 48220420 25777247 12 - + 0 0 1 1 140 150 1 0 1 INTRA cancer_singleSample GBM_7_T 593 1077 0 595 482 1077 2 2 5 5 0,285714 extreme_stepwise GBM_7_T;chainID=2 17 46789729 46789988 17 47054695 47054903 25778542 12 - - 0 0 1 1 147 145 1 0 1 INV cancer_singleSample GBM_7_T 329 634 0 332 302 682 3 4 2 8 0,444444 simple NA 17 47531723 47531865 2 112189588 112189738 19794794 4 + - 0 0 1 1 150 37 1 0 1 INTER cancer_singleSample BRCA_4_T 0 585 585 770 185 770 0 5 12 73 0,105263 simple NA 17 48110925 48111118 17 48336251 48336461 25780245 4 - + 0 4 1 1 150 150 1 0 1 DUP cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 48202696 48202865 7 94048845 94049008 19888544 7 - - 0 0 1 1 146 147 1 0 1 INTER cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 49148966 49149104 17 49149718 49149887 25781550 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 0 629 626 830 201 910 3 10 19 5 0,454545 simple NA 17 49448075 49448217 17 53673144 53673319 25782160 3 - - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T 0 636 634 746 110 760 2 6 10 13 0,342857 simple NA 17 51251439 51251594 17 51916070 51916353 25788542 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_9_T 603 1223 0 605 603 1223 2 6 4 4 0,6 simple NA 17 51298217 51298510 17 51302261 51302570 25788792 18 - + 0 0 1 1 150 144 1 0 1 DUP cancer_singleSample LUSC_13_T 46 426 427 691 265 702 -1 8 19 23 0,275862 simple NA 17 51859508 51859638 17 51994857 51994957 25790604 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 51970319 51970448 17 51971888 51972019 25790838 4 + - 0 0 1 1 118 150 1 0 1 DEL cancer_singleSample OV_7_T 259 632 160 259 99 645 0 3 7 12 0,24 simple NA 17 53624916 53625267 17 53625441 53625840 25795937 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 53834923 53835059 17 64856877 64857018 25796740 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample READ_1_T 112 417 3 110 108 443 -2 6 4 18 0,352941 simple NA 17 54933372 54933552 17 55271529 55271660 25800232 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 632 800 1 633 167 804 1 2 12 22 0,105263 simple NA 17 55786613 55786878 17 55917981 55918267 25801818 17 - + 2 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 0 585 578 1176 578 1176 7 13 7 15 0,541667 mild_oneoff OV_5_T;chainID=5 17 55917316 55917540 17 56064600 56064818 25802039 7 + - 3 2 1 1 150 150 1 0 1 DEL cancer_singleSample OV_5_T 0 354 373 758 355 767 -19 3 24 0 0,2 mild_oneoff OV_5_T;chainID=5 17 55917551 55917754 17 56064374 56064588 25802040 18 - + 1 2 1 1 97 147 1 0 1 DUP cancer_singleSample OV_5_T 198 684 16 181 166 800 -17 6 18 0 0,4 mild_oneoff OV_5_T;chainID=5 17 55942759 55942893 17 56065074 56065196 25802054 3 - + 4 4 1 1 150 124 1 0 1 DUP cancer_singleSample OV_5_T 4 707 700 957 250 973 7 2 12 3 0,210526 mild_oneoff OV_5_T;chainID=5 17 56192465 56192679 17 57760603 57760804 25802462 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 57419522 57419738 17 57421667 57421890 25804679 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 511 844 4 513 331 882 2 0 9 23 0 simple NA 17 57728263 57728477 17 57755049 57755295 25805567 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 83 361 358 826 275 857 3 7 28 32 0,189189 simple NA 17 57788482 57788668 17 57909662 57909835 25805704 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 57881256 57881503 17 57900919 57901139 25805937 5 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_13_T;chainID=4 17 57917336 57917574 17 57942517 57942667 25806024 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_13_T;chainID=4 17 57917645 57917945 17 57942502 57942756 25806027 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_13_T;chainID=4 17 57919348 57919556 3 196284716 196284841 19814717 4 - - 0 0 1 1 36 150 1 0 1 INTER cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 57920356 57920612 17 57947070 57947366 25806032 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_13_T;chainID=4 17 57920589 57920882 17 57945734 57946007 25806033 24 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_13_T;chainID=4 17 57940490 57940797 17 57942897 57943189 25806066 39 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_13_T;chainID=4 17 57949423 57949564 17 57952077 57952251 25806093 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_13_T;chainID=4 17 58440640 58440830 17 58443279 58443407 25807167 3 + - 0 1 1 1 119 150 1 0 1 DEL cancer_singleSample LUSC_13_T 643 939 3 637 297 947 -6 0 1 28 0 simple NA 17 58647632 58647903 17 58651047 58651349 25807627 8 + - 0 0 1 1 133 150 1 0 1 DEL cancer_singleSample LUSC_13_T 325 786 35 327 290 799 2 7 6 17 0,378378 simple NA 17 58717152 58717285 17 58730324 58730568 25807839 8 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_1_T 209 498 79 212 130 528 3 22 20 29 0,473118 simple NA 17 58792085 58792293 17 58832684 58832889 25808069 10 - - 0 1 1 1 150 150 1 0 1 INV cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 59013337 59013476 17 59104212 59104321 25808482 4 - + 0 0 1 1 57 150 1 0 1 DUP cancer_singleSample BRCA_10_T 155 783 0 160 155 783 5 12 29 17 0,342857 simple NA 17 59423421 59423677 17 59592240 59592455 25809531 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 0 608 608 837 229 856 0 18 7 5 0,75 simple NA 17 59765305 59765605 17 60002680 60002959 25810269 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 188 452 408 1021 220 1021 44 3 22 11 0,153846 simple NA 17 59779887 59780089 17 60068755 60068942 25810320 4 + - 0 0 1 1 134 150 1 0 1 DEL cancer_singleSample LUAD_5_T 392 436 5 394 42 468 2 NA NA NA NA simple NA 17 59801910 59802135 8 134197491 134197603 19903601 4 + - 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T 574 668 0 575 93 803 1 11 22 18 0,354839 simple NA 17 61115394 61115594 2 239314161 239314286 19798187 10 - + 0 0 1 1 147 79 1 0 1 INTER cancer_singleSample OV_7_T 24 190 190 341 151 355 0 10 8 15 0,465116 mild_oneoff OV_7_T;chainID=1 17 61258931 61259077 17 65778678 65778839 25813433 6 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample READ_1_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff READ_1_T;chainID=1 17 61517162 61517346 4 90551311 90551511 19833107 5 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 496 905 77 498 407 910 2 12 22 10 0,428571 simple NA 17 62471129 62471301 17 62482949 62483150 25816074 7 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff READ_2_T;chainID=1 17 62843353 62843611 17 64145662 64145908 25816896 9 - - 0 1 1 1 43 150 1 0 1 INTRA cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 62991287 62991539 17 63008195 63008465 25817124 5 - + 0 0 1 1 59 150 1 0 1 DUP cancer_singleSample BRCA_1_T 249 497 20 251 229 533 2 6 22 28 0,193548 simple NA 17 63761909 63762076 17 63763084 63763348 25818888 8 + - 0 0 1 1 150 135 1 0 1 DEL cancer_singleSample LUSC_13_T 276 689 82 278 194 691 2 11 25 38 0,258824 simple NA 17 63835375 63835531 17 63837297 63837514 25819177 7 + - 0 0 1 1 150 143 1 0 1 DEL cancer_singleSample OV_10_T 0 589 589 1175 586 1175 0 10 0 0 1 simple NA 17 64007329 64007943 17 64020845 64021352 25819713 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 64637605 64637850 3 110450521 110450811 19815684 17 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_10_T 3 116 112 714 109 714 4 6 2 10 0,5 mild_oneoff LUSC_10_T;chainID=2 17 64639111 64639229 4 136785991 136786104 19833414 5 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_10_T;chainID=2 17 64639422 64639614 3 110450792 110450948 19815685 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_10_T 632 726 0 612 95 731 -20 1 23 8 0,0606061 mild_oneoff LUSC_10_T;chainID=2 17 64639510 64639711 4 136785744 136786001 19833415 5 + + 0 0 1 1 150 110 1 0 1 INTER cancer_singleSample LUSC_10_T 0 327 348 727 328 781 -21 1 18 2 0,0909091 mild_oneoff LUSC_10_T;chainID=2 17 65544091 65544285 17 65755294 65755435 25822908 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T 0 69 72 700 70 700 -3 6 17 20 0,244898 mild_oneoff READ_1_T;chainID=1 17 66074256 66074479 X 74133621 74133869 5664711 5 - + 0 0 1 1 40 150 1 0 1 INTER cancer_singleSample BRCA_1_T 190 635 10 191 180 1184 1 2 26 6 0,111111 simple NA 17 67429949 67430082 17 74517078 74517241 25827781 3 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_17_T 681 1295 0 683 612 1295 2 7 18 8 0,35 mild_oneoff GBM_17_T;chainID=1 17 68291732 68291943 17 68292704 68292904 25830458 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 598 924 39 588 327 942 -10 5 30 19 0,169492 simple NA 17 68568389 68568564 17 68589655 68589776 25831199 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 69699156 69699367 17 69703779 69704001 25834847 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 602 949 0 603 346 949 1 18 19 20 0,48 simple NA 17 70021139 70021368 17 70021799 70022039 25835767 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_9_T 8 356 356 701 345 723 0 14 6 9 0,651163 simple NA 17 70213343 70213523 17 79699593 79699742 25836208 4 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T 546 661 21 549 112 676 3 1 31 15 0,0416667 simple NA 17 70417503 70417759 9 114701049 114701255 19915965 5 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 70510881 70511141 17 70545186 70545460 25836888 17 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 0 393 391 634 241 634 2 8 30 33 0,202532 simple NA 17 71147100 71147329 17 74562356 74562578 25838281 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_17_T 15 417 414 894 399 917 3 3 3 8 0,352941 mild_oneoff GBM_17_T;chainID=1 17 71172543 71172775 17 71565123 71565353 25838311 16 - + 2 1 1 1 150 147 1 0 1 DUP cancer_singleSample OV_5_T 283 580 184 278 95 602 -5 1 14 3 0,105263 simple NA 17 72442592 72442793 17 73624190 73624435 25839786 18 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_17_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 73154018 73154243 17 73167555 73167788 25840607 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 155 403 8 278 125 414 123 3 6 15 0,222222 simple NA 17 73519171 73519390 17 73530809 73531016 25841151 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_4_T 0 545 544 703 158 726 1 11 16 20 0,37931 simple NA 17 73660813 73661080 3 146994827 146995063 19817256 9 + - 0 0 1 1 150 146 1 0 1 INTER cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 74002892 74003206 3 157454396 157454514 19817283 4 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 599 817 0 599 218 833 0 13 19 5 0,52 simple NA 17 74259925 74260160 17 74260697 74260962 25841946 8 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 74574028 74574163 17 76896017 76896193 25842277 5 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_17_T 0 624 624 1050 426 1070 0 8 5 17 0,421053 mild_oneoff GBM_17_T;chainID=1 17 74607994 74608186 17 74911189 74911412 25842316 7 - - 0 0 1 1 134 136 1 0 1 INV cancer_singleSample GBM_7_T 4 467 468 749 282 800 -1 4 9 4 0,380952 extreme_stepwise GBM_7_T;chainID=2 17 74787951 74788168 17 74973984 74974169 25842568 9 - + 0 0 1 1 135 141 1 0 1 DUP cancer_singleSample GBM_7_T 326 615 5 323 290 632 -3 1 3 15 0,1 extreme_stepwise GBM_7_T;chainID=2 17 75730388 75730664 17 75747026 75747297 25843577 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 167 778 16 167 151 778 0 3 30 22 0,103448 simple NA 17 76220411 76220603 17 76467074 76467246 25844098 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 21 554 554 661 107 661 0 3 8 11 0,24 simple NA 17 76242200 76242375 17 76263953 76264128 25844110 3 + - 0 0 1 1 76 150 1 0 1 DEL cancer_singleSample LUAD_2_T 0 255 255 762 255 792 0 2 19 16 0,102564 simple NA 17 77312153 77312388 17 79357366 79357574 25845077 7 - + 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_9_T 15 410 408 1013 393 1017 2 3 30 26 0,0967742 simple NA 17 77713387 77713650 17 78063458 78063720 25845373 21 - + 2 0 1 1 148 150 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 77728866 77729139 17 78315430 78315688 25845383 22 - + 1 2 1 1 150 146 1 0 1 DUP cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 77757739 77757904 17 77795612 77795817 25845428 3 - + 0 0 1 1 111 150 1 0 1 DUP cancer_singleSample OV_10_T 0 627 622 684 57 684 5 NA NA NA NA simple NA 17 77985115 77985334 17 77987415 77987638 25845599 5 + - 0 0 1 1 143 140 1 0 1 DEL cancer_singleSample OV_10_T 41 540 539 956 416 1004 1 2 1 4 0,444444 simple NA 17 78951608 78951901 17 78957909 78958126 25846853 5 - + 0 0 1 1 125 142 1 0 1 DUP cancer_singleSample LUAD_5_T 513 1133 78 518 435 1133 5 7 12 11 0,378378 simple NA 17 79606227 79606361 17 80002577 80002731 25847120 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 17 80009075 80009261 9 99268874 99269110 19916720 6 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 0 263 260 470 207 482 3 4 6 21 0,228571 simple NA 17 80304157 80304369 17 80308264 80308474 25847485 12 + - 1 1 1 1 150 149 1 0 1 DEL cancer_singleSample OV_6_T 334 563 0 334 229 563 0 12 8 9 0,585366 simple NA 17 80959983 80960211 17 80962747 80963016 25848088 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 335502 335659 18 735138 735254 25969337 6 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_3_T;chainID=2 18 345713 346005 18 698522 698724 25971782 107 + + 0 0 1 1 149 149 1 0 1 INV cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_3_T;chainID=2 18 357221 357337 18 358277 358513 25974978 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 594 837 258 604 233 843 10 15 23 20 0,410959 simple NA 18 367214 367426 18 418953 419175 25978840 28 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_3_T;chainID=2 18 611129 611359 18 674567 674797 26049940 16 + - 1 0 1 1 150 37 1 0 1 DEL cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_3_T;chainID=2 18 627497 627709 18 632719 632985 26054722 7 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 633 636 732 97 732 -3 NA NA NA NA simple NA 18 825790 826020 18 841657 841914 26090181 7 - + 0 0 1 1 150 114 1 0 1 DUP cancer_singleSample BRCA_5_T 153 361 11 154 142 443 1 7 28 10 0,269231 simple NA 18 1205159 1205250 4 110704943 110705025 20002478 3 - - 0 2 1 1 150 150 1 0 1 INTER cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 2666733 2666912 18 3029184 3029362 25948256 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUAD_1_T 9 292 290 657 281 663 2 1 8 10 0,1 simple NA 18 3584065 3584250 18 3587966 3588202 25975467 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 111 629 626 905 276 933 3 2 4 18 0,153846 simple NA 18 3602735 3602922 18 3645979 3646219 25976220 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 145 397 2 145 143 398 0 5 13 10 0,30303 simple NA 18 3728344 3728552 18 3730721 3730925 25980523 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 4266961 4267104 18 4269464 4269562 26000314 4 + - 0 0 1 1 150 132 1 0 1 DEL cancer_singleSample LUSC_13_T 2 342 338 761 336 789 4 2 11 0 0,266667 simple NA 18 5552250 5552457 2 103098864 103099126 19979788 10 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 5553460 5553688 2 103099149 103099357 19979789 6 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 5737548 5737810 18 5748705 5748869 26039291 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 6746356 6746525 18 9355191 9355390 26067546 6 - + 1 3 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T 627 873 0 627 246 899 0 3 15 5 0,230769 simple NA 18 7942311 7942496 18 7948902 7949131 26089357 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 47 143 140 550 93 733 3 12 10 24 0,413793 simple NA 18 8136034 8136296 18 8138163 8138437 26089860 18 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 605 605 712 107 735 0 14 8 6 0,666667 simple NA 18 8180438 8180623 3 25647681 25647914 20000982 3 - - 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 8241239 8241473 18 9889740 9889991 26090134 8 - + 1 0 1 1 110 122 1 0 1 INTRA cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 9245349 9245596 18 9256049 9257262 26092340 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 9304604 9304923 18 9306763 9306985 26092519 4 + - 1 0 1 1 150 97 1 0 1 DEL cancer_singleSample LUAD_5_T 0 597 595 707 110 720 2 8 22 12 0,32 simple NA 18 9562167 9562327 18 9764943 9765150 26093044 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 22 186 182 828 160 831 4 2 21 10 0,114286 simple NA 18 11726392 11726570 18 11729730 11729934 25877752 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 0 605 603 717 112 756 2 12 9 6 0,615385 simple NA 18 11751363 11751583 18 12483940 12484185 25877801 9 + - 4 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 454 1058 0 457 454 1058 3 2 0 15 0,210526 simple NA 18 12666271 12666449 9 33533673 33533910 20093722 5 - - 1 0 1 1 145 58 1 0 1 INTER cancer_singleSample GBM_5_T 246 751 748 908 157 908 3 11 9 4 0,628571 simple NA 18 12963187 12963425 2 163387201 163387353 19918016 5 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_6_T 576 726 0 579 147 744 3 3 9 4 0,315789 simple NA 18 14387933 14387999 2 86282474 86282699 19918386 3 - - 1 0 1 1 60 150 1 0 1 INTER cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 15078988 15079243 18 15141624 15141874 25886202 4 - + 2 0 1 1 72 46 1 0 1 DUP cancer_singleSample LUSC_13_T 221 826 24 222 197 826 1 4 8 43 0,135593 simple NA 18 18630504 18630727 2 190487594 190487769 19970226 6 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_4_T 608 945 0 609 336 945 1 2 11 13 0,142857 simple NA 18 19139863 19140157 18 21347635 21347936 25925714 44 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 1 102 86 799 85 799 16 2 17 2 0,173913 simple NA 18 19429498 19429725 18 19431549 19431701 25926449 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 230 848 66 232 164 848 2 8 26 17 0,271186 simple NA 18 19965908 19966036 18 19967936 19968095 25927777 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 11 333 331 1014 320 1014 2 1 23 17 0,047619 simple NA 18 20248443 20248728 18 43445263 43445575 25928495 16 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 20812942 20813159 18 20813732 20813931 25929930 4 + - 0 1 1 1 124 150 1 0 1 DEL cancer_singleSample GBM_7_T 199 805 0 197 198 805 -2 4 8 5 0,380952 simple NA 18 20901651 20901909 18 20912217 20912472 25930094 15 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T 0 464 462 975 462 989 2 11 11 27 0,366667 simple NA 18 20903574 20903745 18 20912307 20912450 25930109 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_7_T 418 782 5 418 364 788 0 15 23 28 0,37037 simple NA 18 21407842 21408105 6 170404160 170404370 20038297 4 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 21419547 21419745 18 21426757 21426946 25931219 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 671 968 28 673 295 968 2 12 33 19 0,315789 simple NA 18 21486074 21486321 4 41230875 41231108 20007806 9 - + 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_4_T 0 613 609 992 379 1006 4 8 15 24 0,290909 simple NA 18 21937620 21937911 18 28045246 28045583 25932567 24 - + 1 1 1 1 150 147 1 0 1 INTRA cancer_singleSample OV_9_T 454 888 21 456 432 888 2 10 13 32 0,307692 simple NA 18 21975431 21975514 18 21976264 21976380 25932652 3 + - 1 2 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 22054449 22054562 X 80301142 80301273 5824943 3 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_6_T 657 760 13 659 101 775 2 3 12 13 0,193548 simple NA 18 22546704 22546855 18 22919189 22919320 25934561 5 + - 0 0 1 1 148 140 1 0 1 DEL cancer_singleSample OV_7_T 253 767 23 253 230 771 0 3 16 20 0,142857 simple NA 18 22972062 22972268 18 23484499 23484729 25935846 18 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_9_T 689 895 25 691 204 895 2 11 39 33 0,234043 mild_stepwise OV_9_T;chainID=2 18 22987120 22987373 18 25154432 25154717 25935924 14 - + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_9_T;chainID=2 18 23250983 23251141 8 54236445 54236706 20087016 7 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_6_T 320 945 2 320 318 949 0 1 13 8 0,0869565 simple NA 18 23851341 23851577 18 23908411 23908609 25938742 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_4_T 1 694 468 1133 439 1175 226 9 18 16 0,346154 simple NA 18 23902979 23903167 3 49215841 49216046 19990553 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_7_T 296 674 28 297 268 700 1 4 10 21 0,205128 simple NA 18 24133224 24133342 3 49523637 49523749 19990699 4 + + 0 1 1 1 150 123 1 0 1 INTER cancer_singleSample OV_7_T 228 407 17 230 177 411 2 5 14 15 0,25641 simple NA 18 24963417 24963617 18 24964937 24965169 25942111 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_9_T 651 867 0 649 217 867 -2 7 3 5 0,636364 simple NA 18 25128750 25128915 18 25145483 25145652 25942740 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_9_T 52 309 306 681 254 688 3 4 35 28 0,112676 mild_stepwise OV_9_T;chainID=2 18 25735752 25736007 18 27396635 27396835 25944846 8 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_9_T 17 566 561 691 125 691 5 7 13 2 0,482759 simple NA 18 26301875 26302132 8 79270358 79270562 20087403 6 - + 1 3 1 1 150 150 1 0 1 INTER cancer_singleSample OV_1_T 631 913 2 632 281 915 1 1 23 12 0,0540541 simple NA 18 26514777 26515058 18 29261407 29261645 25947615 9 - + 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T 0 628 627 1070 442 1075 1 6 29 26 0,179104 simple NA 18 26706454 26706662 18 28157947 28158157 25948426 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T 341 921 0 342 341 921 1 6 38 19 0,173913 simple NA 18 26766189 26766333 18 26771216 26771485 25948620 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 8 498 498 804 306 823 0 6 14 9 0,342857 simple NA 18 27221853 27222075 21 33091200 33091374 26095349 9 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_8_T 200 704 0 204 200 752 4 11 10 17 0,44898 simple NA 18 27227498 27227619 21 33090607 33090745 26095350 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_8_T 226 469 24 226 202 487 0 3 7 15 0,214286 simple NA 18 27984208 27984426 18 29951110 29951347 25952927 11 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T 0 617 615 976 359 976 2 5 47 16 0,136986 simple NA 18 28639562 28639788 3 120139710 120139881 19991551 5 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 29555200 29555458 18 34385146 34385374 25957068 9 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_10_T 612 721 0 611 110 775 -1 1 21 15 0,0526316 simple NA 18 32652989 32653208 18 32659548 32659787 25966812 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 37 107 104 622 67 622 3 4 29 32 0,115942 simple NA 18 32680326 32680522 18 33735902 33736149 25966884 9 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 32958500 32958757 18 34411820 34412099 25967564 17 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 23 451 451 993 428 993 0 11 7 16 0,488889 simple NA 18 33585232 33585420 18 34529596 34529778 25969392 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_5_T 0 668 665 942 274 987 3 1 5 24 0,0645161 simple NA 18 33860038 33860250 18 33874202 33874394 25969934 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 632 648 902 255 949 -16 9 7 7 0,5625 simple NA 18 33881427 33881569 18 34078071 34078195 25969979 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 34162355 34162618 8 100024177 100024476 20088224 10 - + 1 2 1 1 150 150 1 0 1 INTER cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 34424683 34424907 18 34426906 34427172 25971263 21 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 385 817 291 387 94 844 2 18 10 13 0,610169 simple NA 18 34622623 34622767 18 34631614 34632731 25971893 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 35150897 35151087 18 35154826 35155035 25972912 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 8 74 72 698 64 698 2 6 7 7 0,461538 simple NA 18 35439137 35439275 X 141571310 141571432 5826910 4 + - 0 0 1 1 150 81 1 0 1 INTER cancer_singleSample LUSC_13_T 0 609 607 871 262 894 2 12 48 124 0,122449 simple NA 18 35548782 35548917 18 35602714 35602945 25974237 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 3 431 428 572 141 630 3 5 29 22 0,163934 simple NA 18 36318187 36318299 18 39967159 39967297 25977331 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 36320520 36320678 18 37138738 37138975 25977333 3 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_8_T 29 253 251 862 222 862 2 2 21 21 0,0869565 simple NA 18 36681989 36682262 18 37986011 37986313 25978652 19 - + 1 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_13_T 389 603 1 391 212 611 2 8 37 31 0,190476 simple NA 18 36861276 36861466 18 37369683 37369910 25979282 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_5_T 0 616 616 1237 616 1237 0 4 9 1 0,444444 simple NA 18 37043437 37043682 8 81675809 81676092 20088506 11 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_1_T 0 607 604 682 75 687 3 NA NA NA NA simple NA 18 37135365 37135645 18 37140222 37140471 25980200 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 37317623 37317846 18 37375172 37375370 25980645 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 37402355 37402572 18 37410314 37410491 25980908 21 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 37582996 37583166 18 37585122 37585288 25981477 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T 642 935 0 639 294 962 -3 6 0 10 0,545455 simple NA 18 37935898 37936039 18 38310899 38311028 25982805 5 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 1083 1154 316 1086 68 1183 3 NA NA NA NA simple NA 18 37974670 37974841 18 37975855 37976059 25982917 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 194 541 9 195 185 545 1 3 24 28 0,103448 simple NA 18 38923981 38924211 18 39631687 39631884 25986542 7 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 654 802 0 652 149 825 -2 7 12 19 0,311111 mild_oneoff LUSC_13_T;chainID=5 18 38957771 38958051 7 132903036 132903284 20065895 11 + - 0 0 1 1 150 140 1 0 1 INTER cancer_singleSample LUSC_13_T 0 616 615 843 227 877 1 7 13 19 0,304348 mild_oneoff LUSC_13_T;chainID=5 18 39464412 39464634 18 39469877 39470080 25988597 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 526 772 108 527 245 784 1 7 14 18 0,304348 simple NA 18 39731908 39732132 18 39738041 39738293 25989461 12 - + 1 2 1 1 150 149 1 0 1 DUP cancer_singleSample OV_4_T 530 913 21 533 380 949 3 13 27 29 0,317073 simple NA 18 40650441 40650667 8 64691355 64691634 20088890 7 + + 2 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_1_T 639 907 2 646 261 940 7 5 4 9 0,434783 simple NA 18 40842323 40843043 18 40855826 40857050 25993472 3 + + 0 0 1 1 88 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 41393952 41394217 18 41396155 41396371 25995502 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 635 634 977 342 1035 1 5 15 22 0,212766 simple NA 18 41826890 41827151 18 42456972 42457223 25997231 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 0 608 601 769 161 770 7 16 26 19 0,415584 simple NA 18 42313524 42313748 18 42318981 42319221 25999351 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 2 394 392 612 218 690 2 9 25 36 0,227848 simple NA 18 42376055 42376190 18 42485633 42485761 25999474 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T 0 602 601 1273 601 1273 1 9 2 5 0,72 simple NA 18 42593246 42593401 18 42604013 42604150 26000116 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 600 613 1152 540 1183 -13 3 23 28 0,105263 simple NA 18 45680850 45681104 18 45735814 45736095 26008381 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 300 744 222 301 78 777 1 16 10 11 0,603774 simple NA 18 48029038 48029221 18 48039434 48039641 26013405 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_17_T 610 1045 0 611 434 1126 1 12 11 24 0,40678 simple NA 18 48264031 48264618 18 48272821 48274125 26014006 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 49135045 49135279 18 49477012 49477209 26016551 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 51 602 599 1020 418 1020 3 7 18 19 0,27451 simple NA 18 49619467 49619689 18 49620934 49621172 26018261 7 - + 0 1 1 1 150 136 1 0 1 DUP cancer_singleSample BRCA_2_T 606 1216 0 608 606 1216 2 9 14 46 0,230769 simple NA 18 50274884 50275133 18 50276101 50276354 26020307 14 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 624 876 0 622 253 905 -2 10 3 3 0,769231 simple NA 18 50842366 50842493 4 100103884 100104164 20013553 7 - + 3 0 1 1 150 107 1 0 1 INTER cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 51442595 51442804 18 51443263 51443493 26024013 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_2_T 327 949 0 286 287 949 -41 0 1 0 0 simple NA 18 51738839 51739021 18 51740434 51740584 26024908 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_11_T 635 1244 0 637 607 1244 2 6 26 3 0,292683 simple NA 18 54551463 54551633 4 160292286 160292394 20014380 3 - - 1 5 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 54607447 54607688 18 54956294 54956480 26033138 4 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 578 658 9 584 74 687 6 12 23 23 0,342857 simple NA 18 54689192 54689328 18 71067665 71067781 26033348 4 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 55084854 55084954 3 129770773 129770910 19997307 4 + + 4 2 1 1 35 41 1 0 1 INTER cancer_singleSample BRCA_3_T 253 706 24 374 229 787 121 21 18 19 0,531646 simple NA 18 55225991 55226264 18 57494389 57494679 26034496 9 - + 2 3 1 1 150 112 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 55242199 55242308 18 55244091 55244224 26034542 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 456 704 9 460 244 732 4 1 12 22 0,0555556 simple NA 18 55339932 55340111 18 55423174 55423361 26034662 11 + - 0 0 1 1 129 150 1 0 1 DEL cancer_singleSample COAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 55535992 55536211 18 70903930 70904174 26035183 10 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T 3 246 241 492 238 540 5 7 17 17 0,291667 simple NA 18 56111310 56111577 18 56166810 56167103 26036434 14 + - 1 3 1 1 149 150 1 0 1 DEL cancer_singleSample OV_11_T 391 894 19 392 372 957 1 5 11 27 0,208333 simple NA 18 56286339 56286540 3 105828857 105829054 19997477 4 + - 0 1 1 1 150 76 1 0 1 INTER cancer_singleSample GBM_12_T 0 57 68 641 58 641 -11 3 8 2 0,375 simple NA 18 57070970 57071162 5 111436877 111437067 20026882 4 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 59118973 59119213 18 59121471 59121681 26045159 6 - + 3 1 1 1 136 150 1 0 1 DUP cancer_singleSample OV_4_T 605 672 0 608 64 674 3 NA NA NA NA simple NA 18 59235956 59236063 X 97488129 97488364 5830778 3 + + 4 0 1 1 43 150 1 0 1 INTER cancer_singleSample BRCA_3_T 319 832 21 521 298 910 202 33 17 21 0,634615 simple NA 18 59451408 59451638 18 59453949 59454222 26046005 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 610 609 789 179 795 1 9 9 14 0,439024 simple NA 18 60775648 60775891 18 60780223 60780424 26049185 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 62468864 62469120 18 62688967 62689210 26053944 7 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_8_T 0 583 583 661 78 983 0 7 8 12 0,411765 simple NA 18 63629135 63629324 18 63631079 63631296 26057126 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 64114831 64115057 18 64117467 64117682 26058497 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 745 906 0 750 156 906 5 0 7 6 0 simple NA 18 64159195 64159450 18 64162610 64162827 26058645 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 551 548 883 332 898 3 6 14 20 0,26087 simple NA 18 64587111 64587387 18 64623496 64623772 26059727 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 64674227 64674430 18 64677252 64677487 26060066 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 652 1271 0 610 611 1271 -42 8 11 15 0,380952 simple NA 18 64889510 64889663 18 64894351 64894501 26060559 3 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_12_T 11 403 412 952 393 960 -9 1 3 6 0,181818 simple NA 18 65172394 65172540 2 156527947 156528063 19982018 3 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 65937880 65938087 18 65939666 65939861 26063538 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T 0 600 600 1204 600 1204 0 11 4 7 0,666667 simple NA 18 66796749 66796982 18 66815347 66815614 26065873 14 - + 0 0 1 1 148 150 1 0 1 DUP cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 67249597 67250083 18 67261628 67262239 26067114 4 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 68206939 68207113 18 68208297 68208422 26069239 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_15_T 605 1084 0 607 477 1119 2 6 13 13 0,315789 simple NA 18 68263347 68263534 18 70348995 70349179 26069392 3 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_15_T 9 354 354 981 345 981 0 8 9 15 0,4 simple NA 18 68859051 68859308 18 68859727 68860259 26070755 3 + - 1 1 1 1 150 117 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 69129432 69129652 18 69168777 69168971 26071622 4 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T 579 702 0 612 90 702 33 1 0 0 1 simple NA 18 69277130 69277366 18 69285698 69285955 26072047 10 - + 0 0 1 1 149 150 1 0 1 DUP cancer_singleSample OV_10_T 0 584 582 701 117 747 2 4 11 10 0,275862 simple NA 18 70961820 70962073 9 125802484 125802678 20138242 4 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T 66 207 203 802 137 802 4 8 23 14 0,301887 simple NA 18 71258644 71258885 18 71378562 71378813 26077172 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 560 868 0 563 305 888 3 2 12 15 0,129032 simple NA 18 72904091 72904330 18 72905253 72905462 26080012 13 + - 1 0 1 1 149 148 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 73418972 73419118 18 73420107 73420277 26080982 7 + - 0 1 1 1 65 134 1 0 1 DEL cancer_singleSample OV_3_T 263 408 409 663 146 663 -1 4 10 9 0,296296 simple NA 18 73679726 73679839 X 98894256 98894383 5832280 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 73849004 73849226 18 73856152 73856378 26081834 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 0 607 606 771 164 840 1 3 35 18 0,101695 simple NA 18 74138738 74138862 18 74167259 74167402 26082316 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 152 359 350 480 121 734 9 12 13 26 0,380952 simple NA 18 74793571 74793644 6 142519220 142519279 20046846 3 + + 0 0 1 1 150 35 1 0 1 INTER cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 18 75647774 75647932 18 75657558 75657801 26084408 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T 24 138 134 422 110 467 4 1 23 26 0,0392157 simple NA 18 77987871 77988125 18 77989110 77989332 26088938 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 28 174 174 806 146 808 0 2 9 2 0,266667 simple NA 19 894182 894398 19 895728 895981 26293598 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 162 422 17 163 145 427 1 10 6 13 0,512821 simple NA 19 1056792 1056992 19 1153886 1154061 26096422 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 1128187 1128315 19 1279355 1279512 26097139 3 - - 3 0 1 1 150 124 1 0 1 INV cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 1408042 1408223 19 1470683 1470880 26101568 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample READ_2_T 0 406 400 820 400 836 6 1 3 5 0,2 simple NA 19 2132304 2132497 19 2602419 2602665 26112880 6 - + 0 0 1 1 118 135 1 0 1 DUP cancer_singleSample GBM_10_T 27 461 459 811 350 817 2 3 14 5 0,24 simple NA 19 2492544 2492712 19 2494588 2494740 26133152 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 488 730 25 488 242 730 0 3 10 2 0,333333 simple NA 19 4469574 4469717 19 8137925 8138069 26259722 8 - + 0 0 1 1 150 142 1 0 1 INTRA cancer_singleSample OV_3_T 350 658 32 319 288 668 -31 9 10 7 0,514286 simple NA 19 4510633 4510793 3 145706366 145706474 20225101 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 4835886 4836079 19 4836563 4836749 26265190 5 + - 0 0 1 1 150 130 1 0 1 DEL cancer_singleSample OV_3_T 267 362 0 267 95 368 0 6 8 9 0,413793 simple NA 19 5350564 5350807 3 154594246 154594509 20226564 6 - + 1 0 1 1 150 143 1 0 1 INTER cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 5494992 5495238 8 127302349 127302572 20371374 11 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 165 687 27 168 138 698 3 8 5 31 0,307692 simple NA 19 5506326 5506591 8 127365100 127365342 20371381 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 0 599 602 682 81 736 -3 2 7 29 0,1 simple NA 19 5676570 5676835 8 103823609 103823914 20371578 13 - - 2 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_1_T 948 1019 412 948 71 1019 0 NA NA NA NA simple NA 19 6162291 6162434 19 7165332 7165493 26288304 3 - + 0 0 1 1 100 150 1 0 1 INTRA cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 6417808 6418050 19 7981108 7981262 26288512 5 + - 0 2 1 1 145 150 1 0 1 INTRA cancer_singleSample OV_3_T 479 712 0 480 232 732 1 3 11 8 0,24 simple NA 19 6675538 6675838 19 19332712 19333022 26288786 78 - + 2 0 1 1 126 150 1 0 1 INTRA cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 6747799 6748001 19 19036743 19037016 26288844 27 - - 1 3 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 7457613 7457877 19 7458746 7458938 26290032 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 9082578 9082774 7 121048244 121048476 20350197 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_3_T 15 458 458 583 125 594 0 1 8 16 0,0769231 simple NA 19 9757999 9758166 19 9795819 9795972 26295148 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 10375570 10375701 19 12057888 12058067 26096263 6 - - 1 0 1 1 97 110 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 10376885 10377121 19 10409618 10409863 26096271 7 + - 1 1 1 1 62 150 1 0 1 DEL cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 10440745 10441035 3 160176177 160176378 20205457 9 + - 3 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 10507026 10507327 19 12344960 12345254 26096373 29 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 10614992 10615229 19 10655668 10655879 26096457 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 11035609 11035849 3 177374367 177374594 20205588 3 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise BRCA_1_T;chainID=3 19 11090516 11090714 19 11093275 11093497 26096915 5 + - 1 3 1 1 150 142 1 0 1 DEL cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 11178122 11178354 19 15086440 15086662 26096983 9 + - 3 3 1 1 146 140 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 11212769 11213057 19 17657741 17658031 26097039 127 - + 2 2 1 1 110 106 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 11247134 11247435 19 13741036 13741348 26097091 19 - + 3 1 1 1 148 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 11253483 11253805 19 12305530 12305860 26097096 225 - - 3 2 1 1 148 149 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 11269589 11269762 19 11278858 11279194 26097121 106 - + 3 2 1 1 149 149 1 0 1 DUP cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 11679319 11679484 19 11681898 11682075 26097496 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 30 150 148 537 118 568 2 2 13 5 0,181818 simple NA 19 11797085 11797289 19 11800014 11800201 26097647 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 11874312 11874530 19 11877160 11877411 26097816 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 604 732 0 606 126 774 2 4 21 4 0,242424 simple NA 19 12140918 12141144 19 12278856 12279086 26098265 7 + - 3 3 1 1 150 150 1 0 1 DEL cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 12320175 12320380 19 12328883 12329091 26098489 5 - + 0 0 1 1 119 150 1 0 1 DUP cancer_singleSample BRCA_1_T 309 628 18 310 291 647 1 3 14 7 0,222222 simple NA 19 12366690 12366961 19 12377282 12377582 26098571 81 - + 1 2 1 1 142 150 1 0 1 DUP cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 12366852 12367088 19 12379829 12380080 26098570 64 - - 1 0 1 1 149 149 1 0 1 INV cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 12473852 12473960 19 12521217 12521429 26099269 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 243 489 63 246 180 489 3 12 0 12 0,666667 simple NA 19 12483027 12483329 X 72451827 72452126 5845617 30 + + 3 1 1 1 119 71 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 12510139 12510283 19 12550218 12550379 26099609 5 + - 0 0 1 1 132 150 1 0 1 DEL cancer_singleSample GBM_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 12510842 12510980 19 17303403 17303634 26099614 13 - - 2 3 1 1 44 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 12550648 12550918 19 17303416 17303688 26099704 13 - - 2 2 1 1 90 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 12617317 12617512 19 16368788 16369096 26099797 52 - - 3 2 1 1 150 131 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 12725962 12726235 19 12914363 12914601 26099920 28 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 12843130 12843453 19 13148694 13149012 26099985 144 - - 2 1 1 1 150 149 1 0 1 INV cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 12853528 12853780 19 13562362 13562619 26099994 16 - + 0 0 1 1 148 150 1 0 1 DUP cancer_singleSample OV_5_T 218 816 28 219 190 816 1 6 9 13 0,352941 simple NA 19 12873937 12874221 2 112972082 112972257 20140413 3 - + 2 5 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 12945144 12945323 2 112425121 112425408 20140436 9 + - 4 2 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 13286055 13286335 8 72174927 72175198 20350726 5 + - 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 13332578 13332754 19 13333518 13333699 26100292 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 96 838 832 921 83 929 6 NA NA NA NA simple NA 19 13357171 13357456 2 115640248 115640524 20140712 41 + + 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 13387749 13388057 19 13398278 13398557 26100328 6 - + 0 0 1 1 150 129 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 13439578 13439848 2 120041330 120041592 20140725 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 13602537 13602753 19 13603973 13604162 26100823 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 605 985 8 608 377 985 3 4 23 21 0,153846 simple NA 19 13961579 13961832 X 71150311 71150552 5845810 20 + - 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 14006960 14007182 19 14009024 14009220 26101510 10 - + 0 0 1 1 126 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 14221576 14221764 19 38931946 38932198 26101669 7 - - 1 5 1 1 150 145 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 14323573 14323818 19 14666521 14666727 26101728 9 - - 0 0 1 1 54 148 1 0 1 INV cancer_singleSample OV_3_T 1 136 135 309 134 346 1 3 7 19 0,1875 simple NA 19 14414921 14415102 X 78626405 78626575 5845845 5 + + 3 1 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 14441195 14441342 19 16163136 16163367 26101886 4 - + 3 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 14627104 14627345 19 16724347 16724580 26102067 8 - + 3 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 14648466 14648730 19 15291384 15291640 26102081 7 - + 2 3 1 1 150 146 1 0 1 DUP cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 14662211 14662511 19 15207733 15208033 26102090 17 - - 1 2 1 1 150 150 1 0 1 INV cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 14723795 14723970 19 18838825 18839062 26102187 6 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 0 360 344 619 259 815 16 0 7 10 0 simple NA 19 14879694 14879818 19 23147703 23147854 26102508 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 283 700 4 287 279 700 4 7 14 12 0,35 mild_oneoff LUSC_5_T;chainID=4 19 14880424 14880595 19 20440184 20440503 26102510 7 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 19 182 180 813 161 830 2 5 12 15 0,27027 mild_oneoff LUSC_5_T;chainID=4 19 15491779 15491995 19 15527718 15527932 26103791 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 423 790 24 425 365 797 2 6 41 32 0,141176 simple NA 19 15559392 15559683 19 15585568 15585786 26103853 4 + - 0 0 1 1 150 126 1 0 1 DEL cancer_singleSample LUSC_9_T 9 584 587 889 303 903 -3 6 5 2 0,631579 simple NA 19 15584106 15584271 19 15925147 15925279 26103876 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T 56 320 9 55 47 324 -1 8 0 9 0,64 simple NA 19 15839439 15839732 8 99356110 99356418 20351093 13 + + 1 1 1 1 146 146 1 0 1 INTER cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 15924730 15924929 19 46088938 46089119 26104753 6 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample READ_1_T 3 145 154 679 143 719 -9 4 13 14 0,228571 simple NA 19 16037125 16037250 19 16225817 16225931 26104948 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 11 131 126 463 115 463 5 10 25 25 0,285714 simple NA 19 16058659 16058787 19 16092647 16092788 26105423 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 351 724 4 351 347 728 0 6 15 34 0,196721 simple NA 19 16441698 16441873 19 17552092 17552474 26105857 7 + - 1 1 1 1 144 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 16713096 16713394 19 16724326 16724559 26106062 9 - + 3 2 1 1 150 145 1 0 1 DUP cancer_singleSample OV_4_T 0 558 557 772 214 797 1 7 22 21 0,245614 simple NA 19 16942401 16942633 19 16946466 16946741 26106435 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 343 737 3 344 340 747 1 6 8 8 0,428571 simple NA 19 17108270 17108478 19 17112873 17113073 26106614 5 - + 0 0 1 1 139 137 1 0 1 DUP cancer_singleSample OV_10_T 232 602 1 233 231 673 1 4 10 8 0,307692 simple NA 19 17240656 17240732 20 19787241 19787433 26295904 3 + + 2 0 1 1 103 150 1 0 1 INTER cancer_singleSample OV_3_T 71 656 0 111 71 656 40 9 21 14 0,339623 simple NA 19 17269028 17269237 19 17286828 17287039 26106791 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 602 757 0 601 156 757 -1 9 34 41 0,193548 simple NA 19 17302062 17302201 19 17578156 17578294 26106831 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 597 885 4 599 286 917 2 3 30 21 0,105263 simple NA 19 17308451 17308748 2 114744973 114745258 20142059 73 - - 3 2 1 1 149 149 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 17521490 17521725 19 17526648 17526814 26106979 4 + - 1 0 1 1 136 150 1 0 1 DEL cancer_singleSample BRCA_5_T 10 515 429 869 354 1208 86 8 2 15 0,484848 simple NA 19 17523807 17524114 8 71806745 71807044 20351279 109 + + 2 1 1 1 150 149 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA extreme_stepwise OV_11_T;chainID=1 19 17708185 17708436 19 22723499 22723748 26107154 6 - + 0 0 1 1 41 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 543 667 78 541 125 667 -2 1 21 10 0,0606061 mild_oneoff LUSC_5_T;chainID=4 19 18507591 18507721 19 18542972 18543218 26107805 3 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 4 534 533 745 211 763 1 2 12 16 0,125 simple NA 19 18899280 18899388 19 18955851 18956036 26108059 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_10_T 363 958 17 360 344 963 -3 0 1 18 0 simple NA 19 18902698 18902820 19 18917196 18917448 26108060 6 - + 0 0 1 1 150 109 1 0 1 DUP cancer_singleSample OV_10_T 51 214 212 398 161 418 2 7 22 12 0,291667 simple NA 19 19603383 19603576 19 19605019 19605215 26108725 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 295 749 0 299 295 755 4 0 27 20 0 simple NA 19 19695771 19695978 19 19701206 19701395 26108767 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 229 828 0 230 229 828 1 5 10 14 0,294118 simple NA 19 19777117 19777238 19 22701843 22702017 26108842 3 - - 0 0 1 1 150 119 1 0 1 INTRA cancer_singleSample LUSC_5_T 0 184 182 834 182 834 2 0 8 12 0 mild_oneoff LUSC_5_T;chainID=4 19 19777159 19777364 19 24331246 24331508 26108845 5 + - 0 0 1 1 111 78 1 0 1 INTRA cancer_singleSample LUSC_5_T 66 276 276 675 210 675 0 8 5 34 0,290909 mild_oneoff LUSC_5_T;chainID=4 19 19777675 19777810 19 20433448 20433562 26108849 6 - - 0 0 1 1 150 134 1 0 1 INV cancer_singleSample LUSC_5_T 2 188 187 404 185 408 1 12 11 14 0,489796 mild_oneoff LUSC_5_T;chainID=4 19 19779652 19779920 19 21558078 21558286 26108850 7 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 220 457 0 222 220 495 2 7 4 22 0,35 mild_oneoff LUSC_5_T;chainID=4 19 19924778 19924833 19 20466062 20466165 26109146 5 - + 0 0 1 1 132 85 1 0 1 DUP cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 19957108 19957315 19 20348662 20348814 26109202 6 - - 0 4 1 1 150 139 1 0 1 INV cancer_singleSample OV_11_T 0 227 226 534 226 547 1 3 4 8 0,333333 simple NA 19 20186854 20187088 19 20197568 20197787 26109810 10 - + 1 0 1 1 145 135 1 0 1 DUP cancer_singleSample OV_10_T 586 774 0 583 189 803 -3 0 17 9 0 simple NA 19 20780834 20780949 19 20905669 20905961 26111170 4 - + 2 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_17_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 21112335 21112603 19 21119418 21119659 26112249 9 + - 0 0 1 1 150 140 1 0 1 DEL cancer_singleSample LUSC_7_T 9 425 423 1000 414 1000 2 7 12 20 0,304348 simple NA 19 21211258 21211493 19 21227720 21228000 26112423 13 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample OV_11_T 561 734 0 561 173 734 0 3 16 3 0,24 simple NA 19 21463112 21463245 19 22133900 22134143 26113176 3 - + 0 0 1 1 150 109 1 0 1 DUP cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 21482543 21482725 19 31083428 31083642 26113238 7 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample READ_1_T 271 771 88 271 183 771 0 4 15 17 0,2 simple NA 19 21556837 21557107 19 24456160 24456433 26113392 18 - - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T 551 690 1 564 126 690 13 9 29 16 0,285714 mild_oneoff LUSC_5_T;chainID=4 19 22123222 22123362 9 24136363 24136503 20374684 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 50 492 512 904 393 913 -20 1 21 15 0,0526316 simple NA 19 22164668 22164815 19 23783127 23783275 26115343 4 - - 0 2 1 1 82 150 1 0 1 INTRA cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 22346878 22347062 2 160658104 160658264 20144244 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 22724279 22724638 19 24340356 24340657 26116986 18 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_5_T;chainID=4 19 23164270 23164426 19 23166492 23166618 26117918 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 401 1090 55 403 346 1090 2 3 52 8 0,0909091 simple NA 19 23928828 23929025 19 23929735 23929922 26119729 6 + - 0 0 1 1 118 150 1 0 1 DEL cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 24266653 24266851 19 24278680 24278877 26120422 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 28709362 28709551 19 28749279 28749488 26219763 3 - - 0 1 1 1 150 150 1 0 1 INV cancer_singleSample OV_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 28716674 28716919 3 157674542 157675121 20220293 22 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 28784961 28785133 19 32436823 32437005 26220011 3 + - 0 1 1 1 150 140 1 0 1 INTRA cancer_singleSample OV_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 28915837 28916045 19 32865332 32865393 26220366 3 - + 0 0 1 1 150 116 1 0 1 INTRA cancer_singleSample OV_7_T 317 719 11 317 306 719 0 3 26 10 0,142857 simple NA 19 29047174 29047410 19 29629422 29629635 26220699 41 + - 0 0 1 1 147 102 1 0 1 DEL cancer_singleSample OV_3_T 110 613 31 111 79 613 1 11 33 72 0,173228 mild_stepwise OV_3_T;chainID=3 19 29102432 29102704 19 31214103 31214347 26220834 49 - - 0 0 1 1 112 148 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise OV_3_T;chainID=3 19 29591075 29591346 19 34746276 34746492 26223071 26 - + 1 0 1 1 145 147 1 0 1 INTRA cancer_singleSample OV_3_T 578 645 0 580 65 645 2 NA NA NA NA mild_stepwise OV_3_T;chainID=3 19 29655552 29655813 3 100613677 100613930 20220623 8 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T 0 620 620 807 187 808 0 5 19 6 0,285714 mild_oneoff LUSC_13_T;chainID=6 19 29655865 29656148 3 100613361 100613654 20220624 14 - + 0 0 1 1 150 142 1 0 1 INTER cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff LUSC_13_T;chainID=6 19 29759039 29759276 19 29792270 29792481 26224259 24 + - 1 0 1 1 144 145 1 0 1 DEL cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 30074521 30074782 19 37557064 37557317 26225736 10 - - 1 2 1 1 150 116 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 30252682 30252919 19 32150199 32150471 26226688 29 - + 1 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 30264136 30264401 19 30511551 30511834 26226736 15 - + 2 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 183 261 19 184 77 288 1 10 25 24 0,289855 simple NA 19 30344703 30345004 19 30355338 30355784 26227073 3 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 30387410 30387644 19 35665900 35666144 26227314 5 + - 1 2 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 30428771 30429015 19 30431603 30431860 26227573 6 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 30469610 30469777 19 32703599 32703739 26227712 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 30505364 30505684 19 30508941 30509639 26228039 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 30508185 30509084 19 30509191 30509945 26228051 4 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 30860579 30860683 19 30861410 30861532 26228629 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 380 482 9 383 99 657 3 9 11 18 0,382979 simple NA 19 30991529 30991814 19 30997632 30997894 26228798 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 31245794 31246017 19 34926011 34926251 26229166 16 + - 0 0 1 1 148 92 1 0 1 INTRA cancer_singleSample OV_3_T 239 447 44 239 195 498 0 8 33 25 0,216216 mild_stepwise OV_3_T;chainID=3 19 31567784 31567909 19 31574377 31574527 26230150 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 31777622 31777864 19 31779199 31779429 26230720 15 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 32084550 32084745 19 35455099 35455307 26231260 4 - + 1 3 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 32725811 32726119 19 32732102 32732400 26232901 26 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 32980930 32981229 19 32985881 32986124 26233376 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 33537515 33537748 19 33585360 33585611 26234471 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 20 447 445 716 269 790 2 3 18 20 0,136364 simple NA 19 33548517 33548743 19 33549412 33549622 26234487 5 - + 0 0 1 1 150 124 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 33561168 33561435 19 33567224 33567323 26234505 7 + - 0 0 1 1 146 93 1 0 1 DEL cancer_singleSample OV_10_T 0 245 242 749 242 752 3 2 7 5 0,25 simple NA 19 33794451 33794609 19 33795052 33795270 26234693 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 33866674 33866775 19 33936863 33936952 26234853 3 - - 0 2 1 1 150 83 1 0 1 INV cancer_singleSample OV_7_T 302 648 6 306 296 648 4 2 33 18 0,0727273 simple NA 19 34020678 34021140 3 147513903 147514178 20222164 13 + - 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 34727200 34727461 19 34734227 34734415 26236112 17 - + 0 0 1 1 146 122 1 0 1 DUP cancer_singleSample OV_10_T 0 378 375 532 154 555 3 6 13 49 0,162162 simple NA 19 35038800 35038986 19 39374018 39374324 26236683 3 - - 2 3 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 35051057 35051321 19 35075314 35075549 26236726 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_7_T 0 437 434 536 99 555 3 12 25 34 0,289157 simple NA 19 35233925 35234131 19 35239314 35239535 26237170 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 291 527 529 1193 237 1193 -2 5 19 16 0,222222 simple NA 19 35410688 35410955 3 167366178 167366434 20222586 8 - - 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 35509438 35509722 19 35511341 35511652 26237704 3 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 615 615 740 125 766 0 5 9 5 0,416667 simple NA 19 35778697 35778917 8 59534122 59534352 20369732 6 + - 2 2 1 1 147 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 35972570 35972850 19 36543875 36544185 26238367 11 - + 0 0 1 1 96 150 1 0 1 DUP cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 36262736 36262909 19 36313683 36313797 26238658 7 + - 0 0 1 1 126 137 1 0 1 DEL cancer_singleSample OV_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 37096315 37096512 19 37099485 37099688 26242139 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_10_T 0 587 587 853 266 853 0 0 0 9 0 simple NA 19 37348640 37348874 20 62662801 62662894 26297081 10 + - 0 0 1 1 111 61 1 0 1 INTER cancer_singleSample OV_3_T 300 753 40 304 260 754 4 9 24 23 0,276923 simple NA 19 37524597 37524796 20 62662809 62662894 26297101 4 + + 0 1 1 1 84 45 1 0 1 INTER cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 37564490 37564754 8 135701797 135701987 20370098 9 + - 3 1 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T 602 728 0 603 125 743 1 5 14 16 0,25 simple NA 19 37736580 37736835 19 37827472 37827729 26243446 22 - - 1 3 1 1 149 91 1 0 1 INV cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 37840637 37840875 19 37843793 37844007 26245090 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T 177 347 36 172 137 347 -5 4 17 19 0,181818 simple NA 19 37968505 37968645 19 38865837 38866061 26245390 5 - - 0 2 1 1 150 150 1 0 1 INV cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 38479382 38479551 6 141020775 141020990 20277747 4 - - 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 38852028 38852312 19 38853560 38853843 26246758 10 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 39034233 39034471 19 39101696 39101905 26246911 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 0 634 633 712 78 718 1 NA NA NA NA simple NA 19 39344299 39344456 19 39364051 39364308 26247246 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T 0 370 368 601 231 601 2 1 6 23 0,0645161 simple NA 19 39518323 39518635 8 79289271 79289547 20370273 16 + + 2 2 1 1 150 150 1 0 1 INTER cancer_singleSample OV_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 40914221 40914398 2 221137375 221137619 20196761 9 - + 3 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_4_T 611 689 0 613 76 692 2 NA NA NA NA simple NA 19 40916633 40916915 2 221138099 221138348 20196762 11 + - 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_4_T 0 589 589 730 141 748 0 6 11 16 0,307692 simple NA 19 41120202 41120436 19 41123580 41123834 26250662 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 41167973 41168150 19 41172265 41172445 26250698 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 43 736 740 939 200 955 -4 4 20 16 0,181818 simple NA 19 41438375 41438544 19 41506388 41506562 26251425 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 41675233 41675500 19 41705791 41706120 26252150 9 - + 0 0 1 1 138 150 1 0 1 DUP cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 42128743 42129002 19 42251564 42251837 26252838 15 - - 0 0 1 1 144 136 1 0 1 INV cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 42157595 42157788 19 42506692 42506868 26252903 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 633 843 0 635 208 904 2 4 18 10 0,222222 simple NA 19 42612974 42613206 19 45450085 45450215 26253544 4 - - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_3_T 578 724 39 580 144 737 2 6 20 12 0,272727 simple NA 19 42713513 42713696 19 42718502 42718682 26253641 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_12_T 30 240 239 489 209 518 1 5 11 6 0,37037 simple NA 19 42844105 42844340 19 43116260 43116452 26253710 15 - + 0 0 1 1 144 136 1 0 1 DUP cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 43038834 43039060 19 43809952 43810148 26254051 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_1_T 439 1027 6 440 433 1027 1 6 6 16 0,352941 simple NA 19 43467954 43468141 3 186378696 186378880 20224786 8 + + 0 1 1 1 94 51 1 0 1 INTER cancer_singleSample LUSC_1_T 18 201 199 698 181 701 2 12 23 20 0,358209 mild_oneoff LUSC_1_T;chainID=1 19 43511744 43511872 19 43568364 43568493 26256613 3 + - 0 2 1 1 107 57 1 0 1 DEL cancer_singleSample GBM_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 43531262 43531379 19 43710147 43710313 26256723 3 - + 3 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 43981119 43981387 19 43981975 43982238 26258471 16 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 45536784 45536891 19 45562596 45562865 26261264 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 609 679 0 609 70 696 0 NA NA NA NA simple NA 19 45851291 45851546 19 46792662 46792914 26261531 9 - + 4 1 1 1 150 133 1 0 1 DUP cancer_singleSample OV_5_T 0 568 565 737 169 737 3 5 3 12 0,4 simple NA 19 45919128 45919391 19 46729598 46729881 26261577 13 - + 1 2 1 1 150 124 1 0 1 DUP cancer_singleSample OV_5_T 33 498 495 918 420 925 3 7 26 23 0,222222 simple NA 19 46565691 46565945 19 46573015 46573287 26262177 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 151 587 0 153 151 610 2 2 7 21 0,125 simple NA 19 46568128 46568330 5 79101227 79101444 20271066 9 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_17_T 1 609 607 1019 410 1024 2 11 22 23 0,328358 simple NA 19 46614192 46614357 19 47325109 47325384 26262264 9 - + 2 2 1 1 143 147 1 0 1 DUP cancer_singleSample OV_5_T 549 836 18 552 284 863 3 4 13 9 0,266667 simple NA 19 46671062 46671240 5 79202426 79202610 20271075 7 + + 1 0 1 1 150 34 1 0 1 INTER cancer_singleSample GBM_17_T 636 1069 0 636 433 1116 0 7 17 122 0,0915033 simple NA 19 47335602 47335786 19 47339851 47340122 26263805 4 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 542 664 0 542 122 672 0 14 23 26 0,363636 simple NA 19 47344896 47345167 19 47492152 47492469 26263822 19 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T 0 610 609 867 257 867 1 10 11 17 0,416667 simple NA 19 47366512 47366725 19 48312915 48313181 26263845 4 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 47610920 47611076 19 47622449 47622590 26264266 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 184 272 273 485 89 626 -1 13 27 23 0,342105 simple NA 19 47743955 47744106 19 47752797 47752907 26264423 4 + - 0 0 1 1 150 76 1 0 1 DEL cancer_singleSample LUSC_13_T 605 1242 33 603 571 1242 -2 3 1 4 0,545455 simple NA 19 48108300 48108456 19 48119095 48119311 26264901 6 - + 0 0 1 1 133 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 48734012 48734211 19 48740518 48740746 26268433 3 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 11 300 300 967 289 967 0 7 10 12 0,388889 simple NA 19 48826703 48826891 19 48846141 48846411 26268605 7 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 627 771 39 630 141 774 3 9 11 17 0,391304 simple NA 19 50222544 50222733 19 50227098 50227266 26270265 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 50455744 50455988 19 50458679 50458923 26270427 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 619 1233 0 619 614 1233 0 4 16 2 0,307692 simple NA 19 51116017 51116264 19 51120998 51121236 26272006 7 - + 0 0 1 1 62 64 1 0 1 DUP cancer_singleSample BRCA_1_T 596 682 73 597 85 761 1 14 30 33 0,307692 simple NA 19 51151665 51151850 19 51268800 51268995 26272040 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 37 263 264 586 227 586 -1 5 34 18 0,16129 simple NA 19 51259692 51259926 19 51270656 51270762 26272125 3 - + 0 0 1 1 150 109 1 0 1 DUP cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 52417352 52417484 19 52418507 52418709 26274140 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 401 985 220 404 181 985 3 5 10 12 0,3125 simple NA 19 52427974 52428190 19 52441991 52442177 26274161 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 64 433 430 562 129 572 3 15 20 26 0,394737 simple NA 19 53201204 53201356 19 53206671 53206839 26276265 3 + - 0 0 1 1 43 150 1 0 1 DEL cancer_singleSample LUSC_6_T 3 326 322 740 319 806 4 6 39 15 0,181818 simple NA 19 53342042 53342212 19 53466896 53467068 26277247 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 18 377 373 563 186 599 4 6 12 16 0,3 simple NA 19 53386093 53386300 19 53476931 53477169 26277356 20 - + 0 0 1 1 145 141 1 0 1 DUP cancer_singleSample OV_10_T 568 639 0 568 71 689 0 7 14 5 0,424242 simple NA 19 53748109 53748375 19 53750843 53751112 26278281 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 27 300 296 900 269 900 4 11 16 10 0,458333 simple NA 19 53791758 53791957 19 53793581 53793823 26278347 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 604 703 1 605 98 705 1 10 19 25 0,3125 simple NA 19 54252076 54252325 19 54254222 54254587 26280021 9 + - 0 1 1 1 127 132 1 0 1 DEL cancer_singleSample OV_5_T 51 758 759 944 186 950 -1 6 6 13 0,387097 simple NA 19 54288986 54289208 19 54290205 54290462 26280056 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 622 703 0 625 78 704 3 NA NA NA NA simple NA 19 55734281 55734460 19 55956401 55956578 26282442 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 55737750 55737939 19 55892313 55892517 26282448 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 56889316 56889575 19 56893097 56893365 26284378 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 1 610 607 761 151 763 3 2 11 16 0,129032 simple NA 19 57756559 57756705 8 144727337 144727439 20371697 3 + - 0 4 1 1 150 60 1 0 1 INTER cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 58178594 58178802 19 58830927 58831187 26286751 7 - - 0 0 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T 523 780 48 526 254 834 3 12 18 9 0,470588 simple NA 19 58524069 58524247 19 58528328 58528543 26287388 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 19 58713809 58714057 19 58723077 58723338 26287590 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 35 374 372 903 337 938 2 6 24 6 0,285714 simple NA 20 1405095 1405214 20 1423779 1423991 26313049 8 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample LUSC_13_T 0 616 613 1097 481 1114 3 4 27 15 0,16 simple NA 20 1840751 1840910 20 1861795 1862002 26327047 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 1963525 1963633 20 1965617 1965759 26330304 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 604 863 3 607 256 882 3 7 10 15 0,358974 simple NA 20 2171204 2171317 6 109061918 109062024 20447520 4 - + 0 1 1 1 150 73 1 0 1 INTER cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 2258511 2258699 4 77723509 77723702 20419210 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 605 807 0 606 201 870 1 4 14 15 0,216216 simple NA 20 2672193 2672397 20 2682622 2682850 26355682 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 643 783 0 644 139 783 1 3 23 17 0,130435 simple NA 20 3122816 3122933 20 3130787 3131043 26359946 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 3687194 3687333 20 4511528 4511653 26371029 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_2_T 362 911 12 364 350 914 2 8 2 24 0,380952 simple NA 20 4676485 4676714 20 4696107 4696327 26398571 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 5486070 5486237 20 5550166 5550402 26420373 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 315 619 0 319 300 619 4 2 31 25 0,0666667 simple NA 20 7036285 7036492 20 7043865 7044084 26436672 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 427 746 261 429 166 771 2 5 15 17 0,238095 simple NA 20 7485256 7485480 7 151603232 151603409 20502494 10 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_10_T;chainID=1 20 7485294 7485483 20 7568756 7568831 26438403 4 - + 0 0 1 1 147 150 1 0 1 DUP cancer_singleSample GBM_10_T 70 309 308 446 137 464 1 5 16 14 0,25 extreme_oneoff GBM_10_T;chainID=1 20 7485307 7485519 20 7858926 7859088 26438396 7 + + 0 0 1 1 150 139 1 0 1 INV cancer_singleSample GBM_10_T 223 462 66 224 157 473 1 24 14 15 0,623377 extreme_oneoff GBM_10_T;chainID=1 20 7567604 7567816 7 151602268 151602441 20502507 5 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_10_T;chainID=1 20 7858552 7858801 7 151603149 151603394 20502539 6 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_10_T;chainID=1 20 7859740 7859930 7 151603494 151603632 20502540 3 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_10_T 617 742 0 620 122 746 3 4 11 12 0,258065 extreme_oneoff GBM_10_T;chainID=1 20 8617966 8618200 8 82370743 82371016 20507879 10 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 0 666 664 867 201 867 2 7 26 26 0,212121 extreme_oneoff LUAD_5_T;chainID=5 20 8626523 8626793 8 82030477 82030878 20507880 9 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 0 612 608 1000 388 1037 4 8 34 27 0,207792 extreme_oneoff LUAD_5_T;chainID=5 20 8977377 8977585 20 9036121 9036272 26443567 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 9037057 9037246 20 9358413 9358626 26443772 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 309 464 460 642 151 653 4 7 26 11 0,27451 simple NA 20 9393833 9393968 6 137321057 137321291 20455502 9 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 10023614 10023851 20 10538626 10538877 26299156 12 - + 0 0 1 1 150 139 1 0 1 DUP cancer_singleSample GBM_10_T NA NA NA NA NA NA NA NA NA NA NA extreme_oneoff GBM_10_T;chainID=1 20 10110355 10110597 20 10112709 10112984 26299501 7 + - 0 0 1 1 130 150 1 0 1 DEL cancer_singleSample OV_10_T 545 785 0 547 238 802 2 6 7 5 0,5 simple NA 20 10533315 10533448 7 151439697 151439817 20455607 7 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_10_T 502 741 85 503 238 769 1 5 8 16 0,294118 extreme_oneoff GBM_10_T;chainID=1 20 10539191 10539393 7 151598544 151598720 20455608 5 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_10_T 4 468 467 629 161 640 1 5 6 10 0,384615 extreme_oneoff GBM_10_T;chainID=1 20 10646540 10646791 20 10657161 10657360 26301025 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 10720270 10720464 20 10721088 10721324 26301270 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 201 654 15 203 186 724 2 4 13 9 0,266667 simple NA 20 14707190 14707359 20 14711381 14711559 26315179 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T 642 1251 0 646 605 1251 4 2 19 14 0,108108 simple NA 20 14762443 14762626 20 14835365 14835570 26315391 4 + + 3 0 1 1 150 147 1 0 1 INV cancer_singleSample BRCA_3_T 27 242 240 677 213 753 2 0 27 16 0 simple NA 20 14780803 14781120 20 15111205 15111504 26315451 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 14784902 14785176 20 14834705 14834929 26315471 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 14798890 14799174 20 14817122 14817355 26315545 7 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 279 922 0 282 279 922 3 6 26 29 0,179104 simple NA 20 14849366 14849534 20 14856848 14857006 26315682 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T 626 1238 0 626 612 1238 0 1 12 9 0,0869565 simple NA 20 14937262 14937445 20 14938886 14939066 26315999 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample READ_1_T 535 1183 0 532 533 1183 -3 11 8 22 0,423077 simple NA 20 15078457 15078659 20 15241022 15241350 26316333 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 15097939 15098099 20 15627500 15627690 26316380 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T 605 1261 0 608 605 1261 3 10 8 11 0,512821 simple NA 20 15751167 15751405 20 16168240 16168479 26318639 8 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_5_T 2 87 85 636 83 637 2 4 21 21 0,16 simple NA 20 15830452 15830580 20 15831671 15831815 26318859 4 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 79 500 497 712 212 743 3 1 14 1 0,117647 simple NA 20 16178045 16178194 20 17927853 17927983 26320288 4 + - 0 0 1 1 136 150 1 0 1 INTRA cancer_singleSample OV_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 16584404 16584542 20 16588541 16588740 26321523 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 212 851 16 212 196 851 0 2 12 8 0,166667 simple NA 20 17577260 17577476 20 17593740 17593978 26325091 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 141 311 310 879 169 889 1 12 20 4 0,5 simple NA 20 19336835 19337055 20 19341848 19342030 26329365 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 49 221 235 443 173 504 -14 4 16 19 0,186047 simple NA 20 19573458 19573610 20 19579261 19579383 26330173 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 0 690 692 1343 652 1343 -2 1 3 9 0,142857 simple NA 20 19915658 19915927 20 19921844 19922059 26331072 11 - + 2 2 1 1 150 147 1 0 1 DUP cancer_singleSample OV_4_T 0 604 604 733 129 733 0 6 14 13 0,307692 simple NA 20 20205900 20206065 20 20210396 20210552 26331945 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 608 1216 0 610 606 1216 2 4 26 27 0,131148 simple NA 20 20691672 20691871 8 99062995 99063171 20503705 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 593 971 0 570 379 988 -23 1 25 10 0,0540541 extreme_oneoff LUAD_5_T;chainID=5 20 20898315 20898452 20 20949318 20949447 26334032 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 214 263 36 217 46 602 3 4 28 32 0,117647 simple NA 20 20950844 20951039 8 99046790 99047003 20503712 4 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 0 591 588 1006 415 1036 3 3 31 27 0,09375 extreme_oneoff LUAD_5_T;chainID=5 20 21477068 21477192 20 21478763 21478908 26335564 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_10_T 211 711 30 214 181 726 3 15 24 29 0,361446 simple NA 20 21911353 21912121 20 21922749 21923639 26336536 3 + + 0 0 1 1 129 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 21945105 21945242 20 23953237 23953367 26336604 5 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_10_T 603 848 0 607 241 876 4 14 14 14 0,5 simple NA 20 22707288 22707416 22 29065818 29065965 26447434 3 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 22707323 22707490 22 29065673 29065803 26447435 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_8_T 1783 2112 1638 1787 145 2118 4 5 11 24 0,222222 simple NA 20 22907930 22908040 8 146291698 146291786 20503821 4 + + 0 0 1 1 150 79 1 0 1 INTER cancer_singleSample OV_7_T 52 160 159 521 107 529 1 7 10 20 0,318182 simple NA 20 23033506 23033675 20 23034410 23034661 26340483 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 604 600 1201 597 1201 4 5 6 6 0,454545 simple NA 20 23413231 23413456 8 78684134 78684294 20503846 5 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 635 1074 0 638 436 1084 3 6 21 13 0,26087 simple NA 20 24747169 24747353 20 24747806 24748013 26345433 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 24778834 24779118 20 24790595 24790813 26345501 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 75 484 481 897 406 955 3 5 8 2 0,5 simple NA 20 25193813 25193939 20 25278361 25278492 26346089 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 222 761 33 223 189 775 1 7 20 11 0,311111 simple NA 20 25873537 25873649 20 29421409 29422490 26349635 4 + + 3 2 1 1 35 44 1 0 1 INTRA cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 26080353 26080607 20 26083819 26084055 26352629 8 + - 0 0 1 1 134 103 1 0 1 DEL cancer_singleSample LUSC_6_T 619 1021 0 623 398 1021 4 6 9 18 0,307692 simple NA 20 29428195 29428348 20 29433447 29433587 26356169 8 + - 0 0 1 1 121 57 1 0 1 DEL cancer_singleSample OV_10_T 35 341 340 592 251 593 1 8 1 2 0,842105 simple NA 20 30347785 30347939 20 31222257 31222417 26358561 5 - + 0 0 1 1 147 144 1 0 1 DUP cancer_singleSample OV_3_T 428 867 326 430 102 867 2 3 15 16 0,162162 simple NA 20 30572723 30572855 20 30576022 30576143 26358899 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 768 768 906 138 928 0 4 12 17 0,216216 simple NA 20 30578966 30579140 20 30703521 30703631 26358920 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 16 648 647 854 206 854 1 1 3 12 0,117647 simple NA 20 30715949 30716220 20 30930112 30930480 26359140 12 - + 0 2 1 1 149 147 1 0 1 DUP cancer_singleSample OV_5_T 16 552 547 665 113 665 5 5 25 28 0,15873 simple NA 20 30826685 30826943 6 88441864 88442128 20451280 10 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 46 596 595 928 332 961 1 12 9 26 0,40678 simple NA 20 30832134 30832354 6 88429170 88429429 20451282 5 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 31382260 31382411 20 31383579 31383690 26360188 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 481 807 0 483 324 818 2 13 11 10 0,553191 simple NA 20 31863582 31863838 8 82146539 82146802 20506192 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 606 829 0 607 222 844 1 3 17 21 0,136364 extreme_oneoff LUAD_5_T;chainID=5 20 31942887 31943123 20 32694550 32694802 26361144 7 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 605 720 0 608 112 742 3 9 23 23 0,28125 simple NA 20 32062555 32062835 20 33887991 33888321 26361337 5 + - 0 0 1 1 117 150 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 32186694 32186880 20 32208121 32208359 26361534 3 + - 1 0 1 1 119 150 1 0 1 DEL cancer_singleSample BRCA_7_T 13 263 170 593 157 593 93 6 15 13 0,3 simple NA 20 32685692 32685937 20 32694229 32694465 26362453 4 + - 4 1 1 1 113 150 1 0 1 DEL cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 33120692 33121085 20 35574323 35574655 26363467 5 - + 0 0 1 1 137 129 1 0 1 INTRA cancer_singleSample LUAD_3_T 8 409 407 870 399 873 2 2 9 4 0,235294 simple NA 20 33339999 33340257 20 51680124 51680401 26363965 8 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 41 491 502 624 123 678 -11 5 15 23 0,208333 simple NA 20 33514364 33514534 20 34211152 34211430 26364412 7 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 540 965 0 544 421 1051 4 3 32 25 0,0952381 simple NA 20 34084838 34085142 20 34626458 34626772 26365672 6 + - 0 0 1 1 150 135 1 0 1 DEL cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 35012395 35012517 20 35322308 35322432 26367393 4 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 64 530 522 570 40 640 8 4 1 31 0,2 simple NA 20 35013308 35013482 20 35322499 35322662 26367394 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_10_T 163 483 29 166 134 551 3 7 32 23 0,202899 simple NA 20 35016297 35016443 20 37037598 37037797 26367408 17 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_2_T;chainID=1 20 35016316 35016443 20 49531672 49531864 26367409 7 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_2_T 14 220 218 377 157 435 2 23 37 42 0,368 mild_stepwise LUSC_2_T;chainID=1 20 35088831 35089040 20 35095545 35095767 26367529 10 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 35185872 35186148 20 35202886 35202975 26367680 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 35330361 35330557 20 35331439 35331661 26367942 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 35798010 35798192 20 35804724 35804979 26368972 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 36479204 36479454 20 36824071 36824241 26370464 5 - + 0 0 1 1 150 145 1 0 1 DUP cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 36848317 36848560 X 131765810 131766081 5879626 15 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T 0 605 604 967 362 967 1 18 11 1 0,75 mild_oneoff BRCA_4_T;chainID=5 20 36848579 36848827 X 131764801 131765062 5879627 9 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T 200 815 24 195 172 815 -5 25 8 8 0,757576 mild_oneoff BRCA_4_T;chainID=5 20 36879421 36879600 7 42538031 42538223 20497187 6 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T 160 217 218 605 58 612 -1 8 40 28 0,190476 mild_oneoff BRCA_4_T;chainID=5 20 37037727 37037883 20 49531865 49531978 26371276 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA mild_stepwise LUSC_2_T;chainID=1 20 37659692 37659926 7 146092644 146092888 20497323 3 - + 0 0 1 1 109 150 1 0 1 INTER cancer_singleSample BRCA_2_T 587 728 0 588 140 739 1 3 18 7 0,193548 simple NA 20 37675012 37675291 4 87650356 87650490 20431158 3 + - 0 0 1 1 150 68 1 0 1 INTER cancer_singleSample BRCA_2_T 0 609 609 1218 609 1218 0 1 0 66 0,0294118 simple NA 20 37792426 37792691 8 79619075 79619351 20506522 6 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 0 608 609 850 242 859 -1 8 27 21 0,25 extreme_oneoff LUAD_5_T;chainID=5 20 39045360 39045549 20 39057900 39058096 26377236 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 0 637 636 745 108 1338 1 3 28 22 0,107143 simple NA 20 39973795 39974052 20 41568961 41569212 26379774 7 - + 0 0 1 1 117 149 1 0 1 INTRA cancer_singleSample LUAD_3_T 32 530 535 796 262 796 -5 6 12 15 0,307692 simple NA 20 40062649 40062916 20 40395222 40395454 26379901 8 + + 0 0 1 1 150 117 1 0 1 INV cancer_singleSample LUSC_13_T 0 561 558 890 329 935 3 2 12 0 0,25 simple NA 20 40231976 40232212 20 40233538 40233830 26380350 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 40841524 40841779 20 40856545 40856785 26382339 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 602 1207 0 606 601 1207 4 8 4 3 0,695652 mild_stepwise BRCA_1_T;chainID=1 20 40958771 40958988 20 40966532 40966706 26382797 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 41040650 41041013 20 45050070 45050280 26383115 4 + - 0 0 1 1 150 143 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 41113035 41113250 20 41481638 41481875 26383423 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 41933787 41934030 20 41958478 41958709 26385840 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 42043028 42043284 20 42405247 42405446 26386082 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 0 572 576 863 288 863 -4 4 33 25 0,121212 simple NA 20 42412831 42413011 20 42414685 42414878 26386723 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 197 529 3 198 194 770 1 1 6 2 0,2 simple NA 20 42633352 42633626 20 45439162 45439468 26387214 12 - + 0 0 1 1 137 150 1 0 1 INTRA cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 43924368 43924572 20 55273334 55273527 26390206 11 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 44419169 44419325 20 58454998 58455225 26391576 6 - + 0 0 1 1 89 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 349 552 4 321 204 601 -28 3 17 18 0,146341 simple NA 20 44432720 44432943 20 44444921 44445164 26391598 9 - + 0 0 1 1 150 127 1 0 1 DUP cancer_singleSample OV_6_T 2 290 288 353 63 367 2 NA NA NA NA simple NA 20 45100641 45100782 20 54198970 54199125 26392712 5 - + 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA mild_oneoff OV_5_T;chainID=6 20 45184758 45184961 20 48297641 48297877 26392963 5 + - 0 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_5_T 8 319 316 517 198 518 3 5 27 23 0,166667 mild_oneoff OV_5_T;chainID=6 20 45315179 45315395 20 45318513 45318736 26393260 14 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 644 661 763 103 767 -17 9 17 10 0,4 simple NA 20 45542180 45542417 20 45570667 45570904 26393827 10 + - 3 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 45920450 45920722 20 45931886 45932151 26394759 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_5_T 1 304 306 841 304 854 -2 8 33 35 0,190476 simple NA 20 46064221 46064390 20 50172004 50172271 26395214 3 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 2 340 337 577 237 590 3 2 14 19 0,108108 simple NA 20 46293712 46293940 20 46311146 46311405 26395856 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 129 355 5 131 124 393 2 6 20 20 0,230769 simple NA 20 48315159 48315402 20 54198875 54199098 26402275 12 + - 1 1 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_5_T 148 722 42 150 106 722 2 7 25 27 0,212121 mild_oneoff OV_5_T;chainID=6 20 48769646 48769855 20 49122902 49123108 26403116 9 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 49077958 49078104 20 49123519 49123681 26403478 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_9_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 50281977 50282173 20 52667763 52667984 26405895 5 + + 0 0 1 1 101 138 1 0 1 INTRA cancer_singleSample LUAD_3_T 199 279 3 194 81 283 -5 NA NA NA NA simple NA 20 50380874 50381087 20 50381652 50381814 26406099 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 85 491 0 100 85 491 15 0 25 23 0 simple NA 20 51244869 51245134 20 51247649 51247951 26408476 20 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 6 192 196 716 187 716 -4 11 17 19 0,37931 simple NA 20 52065276 52065530 20 52498946 52499151 26411262 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 476 746 8 479 267 746 3 22 29 35 0,407407 simple NA 20 52149477 52149720 20 53260477 53260702 26411513 9 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 52256378 52256591 20 52257132 52257345 26411755 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_1_T 0 44 50 157 45 168 -6 NA NA NA NA simple NA 20 52547241 52547464 20 52549535 52549792 26412596 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 607 1210 0 610 600 1210 3 5 14 7 0,322581 simple NA 20 53540212 53540373 20 53577198 53577355 26415669 3 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 43 320 315 412 92 415 5 NA NA NA NA simple NA 20 53699590 53699848 20 57387673 57387927 26416126 7 + - 0 1 1 1 89 150 1 0 1 INTRA cancer_singleSample LUAD_3_T 589 768 0 590 178 768 1 4 0 26 0,235294 simple NA 20 56860041 56860168 20 56862678 56862808 26423928 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 144 481 480 1143 336 1171 1 2 24 12 0,1 simple NA 20 56970081 56970202 20 56977786 56977958 26424231 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 596 729 0 604 125 729 8 10 10 17 0,425532 simple NA 20 57098148 57098310 20 57206139 57206257 26424456 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_10_T 164 610 0 167 164 632 3 14 27 23 0,358974 simple NA 20 57368297 57368643 20 57527441 57527716 26424851 14 - + 0 0 1 1 144 148 1 0 1 DUP cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 58892460 58892723 20 59167819 59168096 26428069 21 + - 0 0 1 1 143 148 1 0 1 DEL cancer_singleSample OV_3_T 48 367 364 535 168 541 3 6 21 20 0,226415 simple NA 20 59072298 59072575 20 59121240 59121497 26428537 16 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 8 201 200 809 192 809 1 13 19 23 0,382353 simple NA 20 59767852 59768108 20 59771624 59771825 26430606 8 - + 0 0 1 1 150 133 1 0 1 DUP cancer_singleSample OV_10_T 486 670 669 751 81 770 1 5 13 13 0,277778 simple NA 20 59810042 59810228 20 59814606 59814791 26430680 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 60224483 60224680 20 60227346 60227571 26431072 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_4_T 122 302 57 128 65 334 6 4 6 29 0,186047 simple NA 20 60459763 60459973 8 130606504 130606634 20507711 6 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample OV_3_T 146 588 45 148 101 597 2 2 14 22 0,1 simple NA 20 60675972 60676086 20 60710229 60710347 26431896 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_12_T 0 606 604 978 372 1013 2 5 2 12 0,416667 simple NA 20 60861989 60862243 20 61155081 61155316 26432037 9 - + 1 1 1 1 145 150 1 0 1 DUP cancer_singleSample OV_6_T 77 656 0 56 57 656 -21 2 7 10 0,190476 simple NA 20 61495041 61495272 20 61621778 61622006 26432272 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample GBM_17_T 830 974 58 831 143 990 1 7 13 8 0,4 simple NA 20 61623054 61623178 20 61654174 61654308 26432351 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 20 62056140 62056342 20 62333527 62333715 26432570 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 419 665 58 421 244 681 2 0 4 9 0 simple NA 21 9836176 9836346 21 9852111 9852262 26464715 3 - + 0 0 1 1 109 119 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 9852367 9852572 21 9858966 9859230 26464746 18 + - 0 0 1 1 118 74 1 0 1 DEL cancer_singleSample LUSC_13_T 3 473 472 764 291 820 1 5 46 24 0,125 simple NA 21 10970448 10970777 21 20661153 20661463 26459371 7 - + 0 0 1 1 123 150 1 0 1 INTRA cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 11034795 11035027 6 129777976 129778128 20609868 7 - - 0 0 1 1 51 150 1 0 1 INTER cancer_singleSample LUSC_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 11060602 11060838 6 31259188 31259466 20610255 8 - + 0 0 1 1 96 150 1 0 1 INTER cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 11151574 11151691 22 17500232 17500357 26465060 3 + - 1 0 1 1 150 83 1 0 1 INTER cancer_singleSample GBM_12_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 15917026 15917231 21 15921932 15922131 26461325 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 378 500 99 380 120 573 2 0 22 16 0 simple NA 21 17823060 17823309 21 17827762 17827996 26461484 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 618 617 1227 609 1227 1 9 12 10 0,45 simple NA 21 19364695 19364916 21 19371994 19372241 26461733 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_3_T 630 1019 0 632 387 1028 2 10 22 17 0,338983 simple NA 21 19495527 19495750 3 116075499 116075680 20549073 13 - + 0 0 1 1 150 137 1 0 1 INTER cancer_singleSample OV_3_T 21 353 347 758 326 787 6 3 16 32 0,111111 simple NA 21 19495726 19495915 3 116124282 116124477 20549074 14 + - 0 0 1 1 141 150 1 0 1 INTER cancer_singleSample OV_3_T 324 756 28 326 296 756 2 2 10 24 0,105263 simple NA 21 19737120 19737304 21 19738329 19738528 26461761 4 + - 0 0 1 1 150 123 1 0 1 DEL cancer_singleSample LUAD_3_T 483 657 44 484 173 668 1 4 13 3 0,333333 simple NA 21 19831904 19832066 21 25921802 25921993 26461772 4 + - 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T 488 913 75 490 413 917 2 3 16 18 0,15 simple NA 21 20406646 20406806 3 87421664 87421790 20549228 3 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_6_T 12 448 446 716 268 723 2 8 43 4 0,253968 simple NA 21 20407363 20407632 3 87421650 87421770 20549229 7 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_6_T 252 806 13 252 239 818 0 14 14 5 0,595745 simple NA 21 20541475 20541693 21 20542680 20542925 26461818 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 10 84 77 626 67 626 7 14 14 22 0,4375 simple NA 21 20844261 20844467 21 20846154 20846341 26461833 3 + - 2 1 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 207 853 0 209 207 853 2 3 0 12 0,333333 simple NA 21 20858507 20858673 21 20933305 20933472 26461834 3 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 610 862 0 611 251 862 1 9 20 17 0,327273 simple NA 21 22638045 22638280 21 22724421 22724593 26461909 10 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_10_T 482 953 17 486 465 1002 4 7 7 7 0,5 simple NA 21 22992571 22992729 21 22994177 22994366 26461926 3 - + 1 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 23173944 23174161 21 23732156 23732310 26461937 5 - + 0 0 1 1 150 124 1 0 1 DUP cancer_singleSample LUSC_10_T 466 792 0 440 327 839 -26 5 18 13 0,243902 simple NA 21 23948932 23949053 4 150377132 150377256 20589484 3 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_5_T 684 999 0 686 313 1020 2 7 16 14 0,318182 simple NA 21 24430987 24431276 21 24449842 24450092 26462021 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 68 399 395 633 234 656 4 10 10 9 0,512821 simple NA 21 24902057 24902339 7 154104894 154105166 20655504 13 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T 0 123 123 743 123 743 0 4 30 25 0,126984 simple NA 21 24903763 24903906 7 154105020 154105134 20655505 3 - - 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T 248 418 30 253 165 607 5 4 25 19 0,153846 simple NA 21 25634004 25634233 22 46706838 46707058 26466337 5 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T 21 198 196 371 173 373 2 9 34 19 0,253521 simple NA 21 25927551 25927727 21 26969712 26969947 26462109 8 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 27333515 27333768 21 27334322 27334539 26462185 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 29588871 29589079 21 36209475 36209683 26462333 7 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 30563688 30563885 21 31306096 31306282 26462407 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 30706665 30706830 21 31223289 31223617 26462418 4 - + 0 1 1 1 150 132 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 32023333 32023567 21 32025704 32025928 26462501 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 604 1014 0 604 410 1014 0 5 18 21 0,204082 simple NA 21 32936184 32936366 21 32936745 32936952 26462566 4 + - 0 2 1 1 133 150 1 0 1 DEL cancer_singleSample BRCA_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 33907349 33907518 21 34986388 34986591 26462605 4 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_17_T 3 419 415 539 120 542 4 6 13 20 0,266667 simple NA 21 35415045 35415232 21 45581793 45581912 26462693 4 - + 0 2 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 35866256 35866490 21 35874652 35874902 26462717 9 - + 0 0 1 1 140 150 1 0 1 DUP cancer_singleSample BRCA_2_T 607 761 0 610 151 764 3 8 14 10 0,4 simple NA 21 36227407 36227582 21 44399609 44399839 26462736 6 + - 1 1 1 1 150 61 1 0 1 INTRA cancer_singleSample OV_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 37186860 37187085 21 37190336 37190509 26462802 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 0 634 637 812 176 880 -3 4 18 12 0,210526 simple NA 21 37625761 37626028 21 37630957 37631219 26462832 3 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 38214238 38214568 21 38214682 38215183 26462870 3 + - 0 0 1 1 149 111 1 0 1 DEL cancer_singleSample GBM_7_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 38559973 38560286 21 38827838 38828119 26462884 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 348 759 31 350 317 790 2 4 24 34 0,121212 simple NA 21 39363614 39363696 21 46007508 46007615 26463140 4 - + 1 0 1 1 118 83 1 0 1 INTRA cancer_singleSample OV_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 39923633 39923861 21 39925252 39925487 26463167 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 0 243 255 451 197 461 -12 5 2 27 0,25641 simple NA 21 41566845 41567035 21 41590550 41590743 26463269 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_6_T 1 610 612 812 201 812 -2 14 8 12 0,583333 simple NA 21 41633667 41633944 21 41635958 41636178 26463275 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 10 587 587 800 213 828 0 3 7 12 0,24 simple NA 21 41866394 41866670 21 41869887 41870174 26463294 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 21 42056175 42056455 21 42058651 42058908 26463303 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 423 670 14 426 244 701 3 0 6 4 0 simple NA 21 42149400 42149639 21 42150734 42150962 26463310 10 + - 0 0 1 1 150 140 1 0 1 DEL cancer_singleSample LUSC_13_T 0 631 638 936 299 965 -7 13 4 0 0,866667 simple NA 21 43213968 43214155 21 43227548 43227686 26463363 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 289 929 2 298 287 929 9 8 21 19 0,285714 simple NA 21 43836050 43836271 6 52978177 52978380 20617252 16 - - 1 1 1 1 146 142 1 0 1 INTER cancer_singleSample OV_3_T 0 592 600 737 138 743 -8 9 7 20 0,4 simple NA 21 43951626 43951850 21 44572523 44572726 26463409 6 - + 0 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_6_T 34 182 180 233 51 260 2 NA NA NA NA simple NA 21 46133572 46133804 3 154476387 154476619 20552090 3 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 126 440 0 135 126 457 9 4 18 20 0,173913 simple NA 21 46662282 46662538 21 46664348 46664628 26463648 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 597 852 0 600 252 852 3 4 2 24 0,235294 simple NA 21 46672145 46672305 21 46934774 46934978 26463649 4 - + 5 2 1 1 144 150 1 0 1 DUP cancer_singleSample OV_5_T 602 1017 1 602 415 1074 0 5 13 7 0,333333 simple NA 21 46679589 46679867 21 47041779 47041991 26463650 13 - + 0 2 1 1 150 109 1 0 1 DUP cancer_singleSample OV_5_T 607 716 0 608 108 719 1 7 18 34 0,212121 simple NA 21 47928663 47928911 21 47938739 47938962 26464180 5 + - 2 0 1 1 129 150 1 0 1 DEL cancer_singleSample OV_11_T 0 576 600 795 196 819 -24 4 23 20 0,156863 simple NA 22 17109564 17109807 3 182324055 182324247 20670886 6 + + 0 0 1 1 32 150 1 0 1 INTER cancer_singleSample LUSC_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA 22 17338867 17339127 5 114250950 114251209 20680938 11 - - 0 1 1 1 143 51 1 0 1 INTER cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 22 26882933 26883179 3 49720476 49720769 20672806 4 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA 22 29065479 29065701 3 146601890 146602136 20673187 6 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T 628 989 0 629 360 1066 1 3 20 42 0,0882353 mild_oneoff LUSC_3_T;chainID=4 22 29065499 29065727 7 30393950 30394212 20691104 8 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T 635 768 0 638 130 771 3 4 14 20 0,190476 simple NA 22 29065573 29065709 X 136314805 136315105 7723635 7 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_3_T 68 448 445 1029 377 1029 3 13 20 2 0,541667 simple NA 22 29065615 29065887 8 112346293 112346590 20693758 17 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_6_T 147 421 38 119 82 507 -28 11 22 2 0,478261 simple NA 22 29065644 29065856 4 121140174 121140382 20678423 9 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_1_T 675 1189 0 647 515 1194 -28 11 35 15 0,305556 simple NA 22 29065712 29065832 7 30394271 30394412 20691105 4 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA 22 29065769 29065876 4 34117592 34117829 20678424 4 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUAD_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA 22 29069287 29069519 4 45454216 45454436 20678431 7 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_3_T 0 246 244 431 185 431 2 4 22 20 0,16 mild_oneoff LUSC_3_T;chainID=4 22 29286399 29286595 6 92518231 92518455 20685269 7 + + 0 1 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA 22 30176050 30176187 6 168297398 168297654 20685327 6 + + 1 1 1 1 150 150 1 0 1 INTER cancer_singleSample GBM_5_T 637 926 55 639 287 948 2 5 5 13 0,357143 simple NA 22 34764627 34764871 9 123843600 123843821 20695933 12 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 38 404 405 1016 367 1016 -1 11 6 15 0,511628 simple NA 22 39291930 39292132 3 191136464 191136683 20674632 5 + - 1 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T 294 643 42 297 252 657 3 4 0 38 0,173913 simple NA 22 40372981 40373308 7 53605957 53606246 20692312 11 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_7_T 312 590 98 314 214 606 2 11 32 11 0,338462 simple NA 22 42813596 42813824 3 149271951 149272200 20675183 4 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T 611 740 0 612 128 761 1 8 12 23 0,313725 simple NA 22 42820772 42820914 7 129916972 129917142 20692587 3 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA 22 45135351 45135632 3 46758002 46758120 20675519 4 + + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_2_T 603 789 0 605 184 789 2 10 15 9 0,454545 simple NA 22 46223048 46223288 3 149043302 149043529 20675716 9 - - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample BRCA_4_T 0 453 451 562 109 711 2 12 1 29 0,444444 mild_stepwise BRCA_4_T;chainID=6 22 48300451 48300621 5 113133710 113133891 20683832 10 - + 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA 22 48310645 48310816 5 113123568 113123765 20683833 3 + - 0 0 1 1 150 150 1 0 1 INTER cancer_singleSample LUSC_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 3507373 3507561 X 3510173 3510416 1633541 9 + - 0 0 1 1 150 142 1 0 1 DEL cancer_singleSample OV_10_T 606 824 0 607 217 824 1 8 8 8 0,5 simple NA X 5707331 5707437 X 5779600 5779725 1695816 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 14 62 61 593 47 815 1 11 24 19 0,338462 simple NA X 6612985 6613143 X 7030330 7030543 1850876 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 644 1284 0 647 637 1284 3 4 8 7 0,347826 simple NA X 8342870 8343037 X 8369009 8369217 1916327 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 138 547 9 138 129 557 0 7 18 23 0,254545 simple NA X 8351077 8351194 X 8381317 8381497 1916589 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 46 163 161 424 115 432 2 10 24 5 0,408163 simple NA X 8358512 8358781 X 8361767 8362076 1916928 29 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 609 607 1204 595 1206 2 11 3 4 0,758621 simple NA X 9004108 9004342 X 9007965 9008267 1946029 8 + - 0 0 1 1 139 150 1 0 1 DEL cancer_singleSample LUSC_13_T 611 1129 0 612 517 1153 1 11 3 2 0,814815 simple NA X 9136844 9137034 X 9141635 9141822 1950062 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_7_T 36 330 329 705 293 719 1 2 7 13 0,166667 simple NA X 9258316 9258454 X 9259018 9259210 1953449 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 363 557 4 349 195 557 -14 8 10 16 0,380952 simple NA X 10108140 10108265 X 10322963 10323101 1404542 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 0 389 395 852 390 1041 -6 3 12 18 0,166667 simple NA X 11208361 11208550 X 11216229 11216439 1439526 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 0 599 634 1063 430 1086 -35 9 13 14 0,4 simple NA X 11211010 11211259 X 11212187 11212410 1439583 13 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 33 245 256 886 213 886 -11 13 8 20 0,481481 simple NA X 12611815 12611957 X 12615265 12615408 1484818 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 234 569 28 238 206 599 4 2 17 10 0,129032 simple NA X 15612625 15612895 X 20067718 20068025 1577937 88 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_2_T 0 610 610 876 266 954 0 16 44 26 0,313725 simple NA X 16948957 16949215 X 16953469 16953742 1584220 9 - + 3 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 18319085 18319339 X 18328016 18328304 1588336 21 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 18692010 18692276 X 18693433 18693727 1588994 5 + - 0 0 1 1 125 150 1 0 1 DEL cancer_singleSample LUSC_7_T 604 1061 0 608 453 1071 4 2 5 5 0,285714 simple NA X 19143731 19143894 X 19145495 19145625 1589805 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 614 813 0 616 197 897 2 3 16 9 0,193548 simple NA X 19220711 19220993 X 19225060 19225305 1589965 12 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 618 938 0 626 312 959 8 5 5 8 0,434783 simple NA X 19909851 19910116 X 19917143 19917446 1591805 17 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 1 301 304 810 301 842 -3 9 11 14 0,418605 simple NA X 23630669 23630867 X 23633488 23633708 1603249 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 13 486 482 1005 469 1029 4 1 7 11 0,1 simple NA X 23950778 23950898 X 23970179 23970367 1604437 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_11_T 244 860 37 244 207 860 0 3 22 8 0,166667 simple NA X 23970646 23970935 X 23974364 23974570 1604509 9 + - 0 0 1 1 150 44 1 0 1 DEL cancer_singleSample LUSC_13_T 0 648 645 1147 499 1173 3 15 1 1 0,9375 simple NA X 24043161 24043283 X 24342274 24342514 1604647 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_4_T 608 795 0 610 185 884 2 3 0 22 0,214286 simple NA X 24444036 24444237 X 24543269 24543398 1605275 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_4_T 381 990 0 378 379 992 -3 4 30 6 0,181818 simple NA X 25697366 25697625 X 25703612 25703748 1608493 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 116 315 4 115 112 315 -1 3 16 6 0,214286 simple NA X 26937044 26937153 X 27025605 27025714 1611939 3 + - 2 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_5_T 669 1079 3 674 405 1135 5 0 11 11 0 simple NA X 30383298 30383488 X 31236634 31236832 1620522 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 617 623 1087 465 1110 -6 7 6 13 0,424242 simple NA X 31934396 31934583 X 32271139 32271350 1624128 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 32171331 32171504 X 32223131 32223319 1624869 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_4_T 0 600 596 764 164 772 4 7 11 8 0,424242 simple NA X 32245107 32245278 X 32246081 32246236 1625047 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T 0 614 612 1221 607 1221 2 2 2 12 0,222222 simple NA X 32361980 32362225 X 33498985 33499192 1625353 13 + - 0 0 1 1 148 141 1 0 1 INTRA cancer_singleSample OV_3_T 0 395 391 975 391 975 4 5 2 5 0,588235 simple NA X 33020415 33020678 X 33181381 33181578 1627356 3 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample OV_11_T 623 1215 0 622 593 1215 -1 0 2 7 0 simple NA X 33234132 33234363 X 33799498 33799707 1627813 3 + - 2 2 1 1 150 150 1 0 1 DEL cancer_singleSample OV_1_T 600 1293 0 603 600 1293 3 1 4 6 0,166667 simple NA X 35881159 35881413 X 35883863 35884107 1635830 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_1_T 334 410 0 335 75 700 1 11 7 7 0,611111 simple NA X 36852059 36852313 X 36855120 36855339 1638610 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 630 1236 0 630 606 1236 0 15 2 0 0,9375 simple NA X 37042948 37043233 X 37050251 37050533 1639223 24 + - 2 0 1 1 150 129 1 0 1 DEL cancer_singleSample LUSC_13_T 2 611 609 1035 424 1073 2 9 1 0 0,947368 simple NA X 38053787 38053971 X 38538008 38538203 1641780 5 + - 0 0 1 1 150 146 1 0 1 DEL cancer_singleSample GBM_7_T 413 1024 0 417 413 1024 4 2 2 3 0,444444 simple NA X 38591430 38591590 X 48219258 48219433 1642926 3 + - 0 0 1 1 150 95 1 0 1 INTRA cancer_singleSample BRCA_8_T 55 666 12 53 42 666 -2 7 14 45 0,191781 simple NA X 41111095 41111356 X 41118174 41118371 1648529 13 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 0 121 122 724 122 725 -1 4 24 16 0,166667 simple NA X 41436707 41436933 X 41438828 41438992 1649108 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_1_T 683 1336 392 664 273 1336 -19 11 11 6 0,564103 simple NA X 42826700 42826891 X 42834194 42834431 1653443 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 568 1160 0 576 568 1160 8 3 10 15 0,193548 simple NA X 43225487 43225769 X 43715932 43716198 1654646 13 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 0 611 609 719 108 719 2 10 7 8 0,571429 simple NA X 46535494 46535642 X 46565687 46565875 1663356 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_7_T 182 335 331 939 149 939 4 3 7 4 0,352941 simple NA X 47083383 47083637 X 47144709 47144895 1664489 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_8_T 199 845 123 201 76 845 2 7 8 1 0,608696 simple NA X 53016440 53016654 X 53017944 53018080 1683614 5 + - 1 0 1 1 150 78 1 0 1 DEL cancer_singleSample OV_4_T 50 489 488 801 312 801 1 3 15 25 0,130435 simple NA X 53109826 53110124 X 56522587 56522725 1683761 7 + + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 53733811 53733979 X 53736974 53737160 1684930 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample READ_1_T 640 836 0 643 193 891 3 11 14 19 0,4 simple NA X 54959126 54959301 X 54965365 54965538 1687855 5 - + 0 0 1 1 150 99 1 0 1 DUP cancer_singleSample BRCA_5_T 771 1099 585 772 186 1106 1 7 22 27 0,222222 simple NA X 56318928 56319225 X 56335351 56335538 1692760 4 + - 0 0 1 1 54 150 1 0 1 DEL cancer_singleSample BRCA_2_T 0 610 608 1214 604 1216 2 10 17 5 0,47619 simple NA X 56636263 56636488 X 56842172 56842382 1693803 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_1_T 2 431 428 1035 426 1035 3 7 12 13 0,358974 simple NA X 56896521 56897002 X 56907013 56907294 1695044 3 + + 0 0 1 1 79 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 56949519 56949757 X 56955828 56956048 1695281 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 320 774 50 298 249 803 -22 3 14 18 0,157895 simple NA X 57036875 57037163 X 154980528 154980778 1695528 7 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_11_T 0 600 599 803 203 921 1 7 8 15 0,378378 simple NA X 57713207 57713480 X 57853526 57853785 1698809 7 + + 0 0 1 1 77 87 1 0 1 INV cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 64446283 64446688 X 64459076 64459375 1843790 3 + + 0 1 1 1 70 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 64580016 64580283 X 64580846 64581070 1844408 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 66162140 66162374 X 76147490 76147727 1850941 4 + + 0 0 1 1 150 89 1 0 1 INTRA cancer_singleSample BRCA_6_T 766 1550 0 766 766 1551 0 6 6 14 0,375 simple NA X 67595823 67596031 X 68934943 68935159 1857251 7 - + 1 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 70744789 70745013 X 71606820 71607059 1864032 11 - + 1 0 1 1 138 150 1 0 1 DUP cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 70861336 70861557 X 76559788 76560075 1864219 6 + - 2 0 1 1 150 135 1 0 1 INTRA cancer_singleSample OV_11_T 605 677 0 605 72 705 0 9 21 7 0,391304 simple NA X 71538332 71538551 X 77662647 77662916 1865783 8 + - 2 2 1 1 150 148 1 0 1 INTRA cancer_singleSample OV_11_T 236 633 61 237 175 633 1 4 38 14 0,133333 simple NA X 73544555 73544947 X 73551883 73552114 1872517 9 + - 2 1 1 1 140 150 1 0 1 DEL cancer_singleSample OV_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 74037433 74037608 X 74040026 74040252 1874175 6 + - 0 0 1 1 150 131 1 0 1 DEL cancer_singleSample OV_6_T 25 511 509 656 145 809 2 7 6 4 0,583333 simple NA X 76716039 76716297 X 85217206 85217428 1884031 12 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 76803771 76803989 X 76807627 76807861 1884305 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_4_T 0 695 694 1307 612 1307 1 6 2 1 0,8 simple NA X 76821946 76822188 X 76977576 76977796 1884363 15 - + 1 1 1 1 150 108 1 0 1 DUP cancer_singleSample OV_1_T 602 807 0 602 205 820 0 6 13 21 0,26087 simple NA X 76983193 76983388 X 77027376 77027636 1884759 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_3_T 16 369 366 560 191 577 3 8 16 22 0,296296 simple NA X 77451780 77451893 X 77461461 77461724 1886661 4 - + 0 0 1 1 37 123 1 0 1 DUP cancer_singleSample BRCA_2_T 0 616 617 1226 610 1226 -1 1 23 26 0,0392157 simple NA X 81182642 81182958 X 81192063 81193079 1905856 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 83014003 83014176 X 83015045 83015214 1914243 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 83677546 83678087 X 83687980 83688875 1917312 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 84271848 84271998 X 84289266 84289377 1919987 3 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_10_T 503 602 6 507 95 639 4 4 8 6 0,363636 simple NA X 87190859 87191068 X 87233341 87233529 1932474 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_9_T 296 730 18 298 278 743 2 7 10 14 0,368421 simple NA X 87251770 87251901 X 87543576 87543844 1932674 9 - + 1 0 1 1 141 150 1 0 1 DUP cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 87366356 87366864 X 87376222 87377652 1933168 3 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T 64 228 156 475 92 536 72 0 22 18 0 simple NA X 87534628 87534825 X 87811480 87811729 1933791 4 + - 1 1 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_9_T 56 582 580 867 285 878 2 3 10 9 0,24 simple NA X 88859013 88859173 X 88860554 88860719 1942068 4 + - 0 0 1 1 134 141 1 0 1 DEL cancer_singleSample LUSC_13_T 708 1313 0 707 606 1313 -1 5 1 7 0,555556 simple NA X 88859127 88859276 X 145737883 145738057 1942069 3 - + 1 0 1 1 76 150 1 0 1 INTRA cancer_singleSample COAD_3_T 606 985 0 607 378 990 1 2 6 0 0,4 simple NA X 88929724 88929899 X 88931445 88931588 1942273 5 + - 0 0 1 1 58 69 1 0 1 DEL cancer_singleSample LUSC_13_T 194 826 26 195 168 826 1 0 2 1 0 simple NA X 89455651 89456161 X 89467172 89467427 1944027 3 + + 0 0 1 1 59 70 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 89805707 89806083 X 89815527 89816386 1945222 3 + + 0 0 1 1 70 49 1 0 1 INV cancer_singleSample BRCA_3_T 668 771 97 673 98 878 5 1 16 22 0,05 simple NA X 90712195 90712442 X 90720518 90720772 1948442 12 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 0 622 621 791 169 798 1 16 15 15 0,516129 simple NA X 92706772 92706937 X 93687007 93687204 1954260 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_11_T 0 523 520 1131 520 1131 3 5 16 15 0,243902 simple NA X 92981710 92981954 X 92982634 92982908 1955502 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 93564738 93564941 X 93565293 93565471 1957633 4 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_3_T 16 344 310 429 85 429 34 0 6 74 0 simple NA X 94048299 94048499 X 94064421 94064600 1959978 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 648 918 0 651 267 918 3 0 10 19 0 simple NA X 95283721 95283976 X 95987480 95987766 1965044 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_3_T 644 782 0 648 134 782 4 3 11 6 0,26087 simple NA X 96006438 96006609 X 96006968 96007130 1967099 4 + - 1 1 1 1 120 150 1 0 1 DEL cancer_singleSample READ_2_T 611 921 0 625 296 921 14 13 0 7 0,787879 simple NA X 96283670 96283921 X 96289576 96289952 1967585 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_8_T 609 1236 0 611 609 1237 2 3 11 7 0,25 simple NA X 96452202 96452465 X 96463479 96463747 1967955 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 0 618 614 1219 601 1219 4 9 1 2 0,857143 simple NA X 97740177 97740371 X 150873691 150873905 1971594 7 - + 0 0 1 1 137 150 1 0 1 INTRA cancer_singleSample GBM_7_T 597 731 0 600 131 772 3 5 2 11 0,434783 mild_oneoff GBM_7_T;chainID=3 X 98857716 98857929 X 98865445 98865717 1975539 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 473 471 1083 471 1083 2 2 18 8 0,133333 simple NA X 102192951 102193094 X 102754751 102754897 1408332 3 + + 0 0 1 1 116 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 103182543 103182645 X 103349847 103349962 1410594 3 + + 1 0 1 1 150 150 1 0 1 INV cancer_singleSample GBM_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 103332534 103333305 X 103343330 103343727 1411071 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 107507940 107508222 X 108124022 108124255 1423931 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_9_T 0 599 599 959 360 974 0 7 10 12 0,388889 simple NA X 107656471 107656626 X 107890652 107890821 1424402 10 + - 0 0 1 1 150 112 1 0 1 DEL cancer_singleSample LUSC_8_T 0 604 600 1032 428 1032 4 10 14 120 0,12987 simple NA X 107816510 107816710 X 107842710 107842932 1424816 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 170 530 527 562 32 571 3 NA NA NA NA simple NA X 107926149 107926286 X 107927346 107927505 1425238 3 + - 0 0 1 1 117 150 1 0 1 DEL cancer_singleSample BRCA_12_T 0 636 633 1235 599 1235 3 5 8 9 0,37037 simple NA X 109171077 109171322 X 109217183 109217343 1429250 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_5_T 0 680 677 933 253 961 3 6 14 12 0,315789 simple NA X 112419316 112419479 X 113283331 113283486 1440591 4 + + 0 1 1 1 126 88 1 0 1 INV cancer_singleSample GBM_19_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 114302491 114302706 X 114311140 114311398 1446223 5 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 481 676 14 482 194 690 1 7 34 15 0,222222 simple NA X 114945741 114945991 X 116156665 116156936 1447666 6 + - 1 3 1 1 150 150 1 0 1 INTRA cancer_singleSample OV_11_T 293 430 430 493 63 533 0 7 13 5 0,4375 simple NA X 115528842 115529071 X 115530396 115530663 1451207 11 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_2_T 0 620 620 1230 610 1230 0 8 12 12 0,4 simple NA X 115894975 115895201 X 115899180 115899375 1452400 5 + - 1 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 585 1166 0 588 578 1166 3 4 6 4 0,444444 simple NA X 116050413 116050641 X 116051879 116052085 1453013 9 - + 0 0 1 1 150 81 1 0 1 DUP cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 116648451 116648668 X 116661149 116661331 1455413 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T 47 131 129 455 82 457 2 1 15 11 0,0714286 simple NA X 117613637 117613823 X 117619543 117619762 1458273 8 - + 0 0 1 1 150 145 1 0 1 DUP cancer_singleSample BRCA_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 117643245 117643451 X 117649489 117649721 1458296 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUAD_6_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 118649211 118649320 X 120330253 120330359 1460247 3 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample BRCA_10_T 451 504 12 453 51 515 2 NA NA NA NA simple NA X 118686071 118686256 X 118687114 118687277 1460347 5 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 118887774 118888016 X 118888961 118889215 1460741 8 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 118891428 118891653 X 118896590 118896745 1460745 10 - + 0 0 1 1 150 95 1 0 1 DUP cancer_singleSample OV_6_T 0 582 573 627 45 648 9 NA NA NA NA simple NA X 119384669 119384837 X 119440177 119440405 1462032 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 610 742 0 608 133 744 -2 6 5 15 0,375 simple NA X 119555397 119555649 X 120450873 120451163 1462520 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUAD_5_T 0 651 648 1199 548 1216 3 5 8 20 0,263158 simple NA X 119788702 119788974 X 120289737 120289877 1463080 3 + - 0 0 1 1 150 107 1 0 1 DEL cancer_singleSample GBM_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 122138316 122138596 X 122139059 122139325 1471608 23 + - 0 0 1 1 150 33 1 0 1 DEL cancer_singleSample LUSC_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 122406242 122406494 X 122409439 122409711 1472844 11 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 601 600 990 389 1020 1 7 14 19 0,297872 simple NA X 123798705 123798845 X 123799973 123800202 1476561 3 + - 0 3 1 1 150 150 1 0 1 DEL cancer_singleSample OV_11_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 125361769 125361992 X 125438102 125438340 1482478 10 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_6_T 494 1127 13 497 481 1127 3 1 7 10 0,105263 simple NA X 127314662 127314783 X 127325351 127325531 1489632 3 + + 0 1 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T 548 777 36 555 222 841 7 1 25 24 0,0392157 simple NA X 128112295 128112476 X 128125228 128125814 1492226 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 128286777 128286991 X 128288556 128288785 1492881 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_2_T 643 864 0 646 218 866 3 8 11 11 0,421053 simple NA X 128523887 128524005 X 128533591 128533738 1493781 5 + - 0 0 1 1 36 150 1 0 1 DEL cancer_singleSample BRCA_12_T 0 611 608 1149 538 1149 3 3 70 18 0,0638298 simple NA X 129051101 129051384 X 129105290 129105557 1494843 14 - + 0 0 1 1 150 141 1 0 1 DUP cancer_singleSample GBM_3_T 615 907 0 617 290 942 2 10 16 11 0,425532 simple NA X 129154626 129154732 X 129155405 129155656 1494939 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 129203788 129204050 X 129207397 129207556 1494975 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 130466972 130467160 X 130472772 130472963 1498177 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 114 758 49 119 65 758 5 5 13 26 0,204082 simple NA X 130867245 130867376 X 130873559 130873705 1499866 4 - + 0 0 1 1 147 150 1 0 1 DUP cancer_singleSample BRCA_12_T 114 595 594 799 204 815 1 1 26 27 0,0363636 simple NA X 131354741 131355013 X 131355858 131356094 1501344 16 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 594 1188 0 596 592 1188 2 11 22 19 0,349206 simple NA X 131930626 131930794 X 132014101 132014290 1503481 7 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample READ_2_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 132192398 132192683 X 137216366 137216638 1504376 14 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_9_T 372 1138 1137 1344 206 1344 1 0 11 10 0 simple NA X 132893499 132893703 X 132964549 132964715 1506491 8 + - 0 0 1 1 150 138 1 0 1 DEL cancer_singleSample LUSC_3_T 383 519 517 776 134 778 2 6 31 19 0,193548 simple NA X 134340575 134340710 X 134345774 134345958 1510496 4 - + 1 0 1 1 100 150 1 0 1 DUP cancer_singleSample BRCA_2_T 673 885 0 675 210 900 2 7 14 18 0,304348 simple NA X 135007841 135007997 X 135008664 135008880 1512942 3 + - 0 1 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 135340880 135341168 X 135499493 135499607 1513628 3 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 578 893 212 581 312 995 3 3 20 11 0,162162 simple NA X 136399271 136399486 X 136403078 136403301 1516682 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_1_T 15 466 465 882 416 895 1 6 8 12 0,375 simple NA X 137393001 137393139 X 137444682 137444786 1519592 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_12_T 0 617 616 848 231 893 1 7 20 16 0,28 simple NA X 137412143 137412434 X 146617357 146617657 1519676 14 + - 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample LUSC_8_T 0 621 619 1231 610 1231 2 7 8 9 0,451613 simple NA X 137619983 137620224 X 137623724 137624029 1520547 12 - + 1 1 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 137732938 137733143 X 137734821 137735008 1520930 4 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 578 1139 0 580 559 1170 2 2 2 5 0,363636 simple NA X 137864302 137864606 X 137900191 137900433 1521412 15 + - 0 0 1 1 104 150 1 0 1 DEL cancer_singleSample LUSC_7_T 441 685 22 441 244 705 0 18 124 11 0,210526 simple NA X 138724265 138724372 X 139602578 139602798 1524413 5 + - 0 0 1 1 150 148 1 0 1 DEL cancer_singleSample GBM_7_T 279 811 11 282 268 811 3 4 7 10 0,32 mild_oneoff GBM_7_T;chainID=3 X 138749367 138749581 X 151934776 151934961 1524485 6 + - 0 0 1 1 116 31 1 0 1 INTRA cancer_singleSample GBM_7_T 0 573 572 1158 572 1158 1 2 4 4 0,333333 mild_oneoff GBM_7_T;chainID=3 X 138941884 138941970 X 138942293 138942391 1525061 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_10_T 94 684 12 109 82 684 15 3 0 0 1 simple NA X 139067089 139067327 X 139069043 139069285 1525339 11 + - 0 0 1 1 150 128 1 0 1 DEL cancer_singleSample LUSC_2_T 67 667 0 70 67 670 3 6 15 7 0,352941 simple NA X 139334400 139334598 X 140057569 140057717 1526200 4 - + 0 0 1 1 147 150 1 0 1 DUP cancer_singleSample GBM_8_T 595 816 0 596 220 836 1 2 6 4 0,285714 simple NA X 139780506 139780765 X 139782105 139782373 1527687 6 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_5_T 37 369 368 680 311 699 1 2 20 25 0,0816327 simple NA X 141003039 141003153 X 141275157 141275264 1532568 3 + + 0 1 1 1 150 126 1 0 1 INV cancer_singleSample OV_10_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 142089344 142089463 X 142090590 142090741 1536074 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample OV_6_T 582 761 0 584 177 775 2 2 4 6 0,285714 simple NA X 142307423 142307627 X 142309110 142309315 1537002 6 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 0 609 606 776 167 776 3 12 23 18 0,369231 simple NA X 142716512 142716778 X 142719975 142720232 1538543 7 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_13_T 624 1009 0 611 386 1009 -13 4 18 22 0,166667 mild_oneoff LUSC_13_T;chainID=2 X 143650863 143651188 X 143664302 143664814 1541306 3 + + 0 0 1 1 150 150 1 0 1 INV cancer_singleSample BRCA_3_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 144731234 144731592 X 144731762 144732133 1545329 3 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample COAD_1_T NA NA NA NA NA NA NA NA NA NA NA simple NA X 145767590 145767716 X 145774227 145774402 1549273 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample COAD_1_T 630 1271 0 638 630 1271 8 7 21 17 0,269231 simple NA X 146134197 146134447 X 146136331 146136590 1550578 9 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample LUSC_13_T 8 594 592 1157 563 1181 2 5 12 5 0,37037 simple NA X 146617724 146617962 X 146619346 146619522 1552571 4 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample LUSC_7_T 485 639 305 485 154 639 0 18 0 12 0,75 simple NA X 146952796 146952975 X 146982591 146982744 1553779 8 - + 0 0 1 1 150 150 1 0 1 DUP cancer_singleSample BRCA_2_T 619 672 0 607 54 694 -12 NA NA NA NA simple NA X 147381186 147381415 X 147392350 147392570 1554951 6 + + 0 0 1 1 129 150 1 0 1 INV cancer_singleSample BRCA_7_T 575 1184 0 580 575 1184 5 3 8 10 0,25 simple NA X 148492027 148492205 X 148496139 148496319 1559366 5 + - 0 0 1 1 150 150 1 0 1 DEL cancer_singleSample BRCA_11_T 0 609 607 812 203 816 2 18 19 18 0,493151 simple NA X 149612272 149612519 X 149614409 149614675 1562471 12 - + 1 3 1 1 150 150 1 0 1 DUP cancer_singleSample OV_4_T 20 341 338 914 318 914 3 2 33 24 0,0655738 simple NA X 150831670 150831850 X 152055122 152055339 1565807 6 + - 0 0 1 1 130 150 1 0 1 INTRA cancer_singleSample GBM_7_T 0 634 630 703 69 745 4 5 5 7 0,454545 mild_oneoff GBM_7_T;chainID=3 X 150831978 150832178 X 152014082 152014357 1565808 10 - + 0 0 1 1 150 150 1 0 1 INTRA cancer_singleSample GBM_7_T 0 585 585 1018 433 1024 0 5 5 5 0,5 mild_oneoff GBM_7_T;chainID=3 X 151240462 151240713 X 151242389 151242549 1567069 5 + - 2 1 1 1 147 45 1 0 1 DEL cancer_singleSample OV_10_T 587 772 10 591 181 774 4 8 5 9 0,533333 simple NA Y 14554925 14555239 Y 14573275 14573650 2102945 7 + - 0 0 1 1 140 150 1 0 1 DEL cancer_singleSample LUSC_5_T 0 611 614 895 282 895 -3 8 23 10 0,326531 simple NA Y 21296018 21296152 Y 21296651 21296921 2103269 3 + - 0 2 1 1 150 126 1 0 1 DEL cancer_singleSample GBM_5_T 650 1259 0 651 608 1259 1 8 0 0 1 simple NA