Paweł Górecki - software and supplementary dataPlease do not hesitate to contact me if you any questions related to the data and software available below. Mail: gorecki [at] mimuw.edu.pl. Fasturec - local search algorithms for GTP problems
Software for the inference of an optimal species tree under duplication and duplicaion-loss cost from a set of unrooted gene trees.
(NNI local search algorithm implementation).
Link: http://bioputer.mimuw.edu.pl/gorecki/fasturec Robinson-Foulds - unrooted vs rooted
Scripts for computing Robinson-Foulds measure between an unrooted (gene) tree and a rooted (species) tree.
Link: http://bioputer.mimuw.edu.pl/gorecki/urrf. Supported by NCN grant 2011/01/B/ST6/02777. DrML
Software for the inference of an optimal evolutionary scenario in the probabilistic model of duplication events.
Link: http://bioputer.mimuw.edu.pl/gorecki/drml. Supported by NCN grant 2011/01/B/ST6/02777. Urec
A program for unrooted reconciliation.
Link: http://bioputer.mimuw.edu.pl/gorecki/urec. Error-correction
Error correction scripts and prototypes.
Link: http://bioputer.mimuw.edu.pl/gorecki/ec. Supported by NCN grant 2011/01/B/ST6/02777. Metagenomics and reconciliation
Reconstruction of missing mappings between genes and species (written by A.Betkier).
Link: http://www.mimuw.edu.pl/gorecki/mgremap. Supported by NCN grant 2011/01/B/ST6/02777. Duplication episode clustering
Episode clustering for unrooted gene trees (written by J.Paszek).
Link: http://www.mimuw.edu.pl/~jpaszek/soft.php. Supported by NCN grant 2011/01/B/ST6/02777.
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