[last update: June 2008]

Journals and peer-reviewed conference proceedings

  • Damian Wójtowicz, Jerzy Tiuryn, Evolution of gene families based on gene duplication, loss, accumulated change, and innovation, Journal of Computational Biology 14/4, pages 479--495, 2007.
  • Jerzy Tiuryn, Damian Wójtowicz, Ryszard Rudnicki, A Discrete Model of Evolution of Small Paralog Families, Mathematical Models and Methods in Applied Sciences 17(6), pages 933--956, 2007.
  • Ryszard Rudnicki, Jerzy Tiuryn, Damian Wójtowicz, A model for the evolution of paralog families in genomes, Journal of Mathematical Biology 53(5), pages 759--770, 2006.
  • Damian Wójtowicz, Jerzy Tiuryn, On genome evolution with accumulated change and innovation, Proceedings of RECOMB Comparative Genomics Satellite Workshop 2006, LNCS/LNBI 4205, pages 40--50, 2006.
  • Damian Wójtowicz, Jerzy Tiuryn, On genome evolution with innovation, Proceedings of Mathematical Foundations of Computer Science 2006, LNCS 4162, pages 801--811, 2006.
  • Anna Gambin, Damian Wójtowicz, Almost FPRAS for Lattice Models of Protein Folding, Proceedings of 4th International Workshop on Efficient and Experimental Algorithms, LNCS 3503, pages 534-544, 2005.
  • Jerzy Tiuryn, Ryszard Rudnicki, Damian Wójtowicz, A case study of genome evolution: from continuous to discrete time model, Proceedings of Mathematical Foundations of Computer Science 2004, LNCS 3153, pages 1-24, 2004. [errata]

Poster Presentations

  • D. Wójtowicz, J.Tiuryn and R.Rudnicki, A Simple Probabilistic Model of Evolution of Paralog Families in Genomes, The 3rd RECOMB Satellite Workshop on Comparative Genomics, Trinity College Dublin, 2005.
  • D. Wójtowicz, J.Tiuryn, A Markovian model of genome evolution: distribution of paralogs, RECOMB, San Diego (CA), 2004.
  • D. Wójtowicz, A. Gambin, Almost FPRAS for Lattice Models of Protein Folding, RECOMB, Berlin, 2003.

PhD, MSc and BSc Theses

  • Damian Wójtowicz, Modelling of genome evolution (in Polish: Modelowanie ewolucji genomu), Ph.D. thesis in computer science, University of Warsaw, 2007.
  • Damian Wójtowicz, Approximation algorithms for counting walks on FCC lattice (in Polish: Algorytmy aprokcymacyjne zliczające spacery na kracie FCC), M.Sc. thesis in computer science, University of Warsaw, 2002.
  • Damian Wójtowicz, Bairstow's method -- properties and implementation, (in Polish: Metoda Bairstowa -- własności i implementacja), B.Sc. thesis in mathematics, University of Warsaw, 2000.