Rhabdovirus spike glycoprotein
Frequently abbreviated to G protein. The glycoprotein spike is made
up
of a trimer of G proteins.
Channel formed by glycoprotein spike is
thought to function in a similar manner to Influenza 
virus M2 protein
channel, thus allowing a signal to pass across the viral membrane to
signal
for viral uncoating.
>PF009740001
MALLCFETERNSQRPTKTMDTTITTPLILILITCGANSQTVKPDTASESDQPTWSNPLFTYPEGCTLDKL
SKVNASQLRCPRIFDDENRGLIAYPTSIRSLSVGNDLGDIHTQGNHIHKVLYRTICSTGFFGGQTIEKA
VEMKLSTKEAGAYDTTTAAALYFPAPRCQWYTDNVQNDLIFYYTTQKSVLRDPYTRDFLDSDFIGGKCTK
SPCQTHWSNVVWMGDAGIPACDSSQEIKGHLFVDKISNRVVKATSYGHHPWGLHQACMIEFCGKQWIRTD
LGDLISVEYNSGAEILSFPKCEDKTVGMRGNLDDFAYLDDLVKASESREECLEAHAEIISTNSVTPYLLS
KFRSPHPGINDVYAMHKGSIYHGMCMTVAVDEVSKDRTTYRAHRATSFTKWERPFGDEWEGFHGLHGNNT
TIIPDLEKYVAQYKTSMMEPMSIKSVPHPSILALYNETDVSGISIRKLDSFDLQSLHWSFWPTISALGGI
PFALLLAVAACCCWSGRPPTPSASQSIPMYHLANRS
>PF009740005
MDLFPILVVVLMTDTVLGKFQIVFPDQNELEWRPVVGDSRHCPQSSEMQFDGSRSQTILTGKAPVGITPS
KSDGFICHAAKWVTTCDFRWYGPKYITHSIHHLRPTTSDCETALQRYKDGSLINLGFPPESCGYATVTDS
EAMLVQVTPHHVGVDDYRGHWIDPLFPGGECSTNFCDTVHNSSVWIPKSQKTDICAQSFKNIKMTASYPS
EGALVSDRFAFHSAYHPNMPGSTVCIMDFCEQKGLRFTNGEWMGLNVEQSIREKKISAIFPNCVAGTEIR
ATLESEGARTLTWETQRMLDYSLCQNTWDKVSRKEPLSPLDLSYLSPRAPGKGMAYTVINGTLHSAHAKY
IRTWIDYGEMKEIKGGRGEYSKAPELLWSQWFDFGPFKIGPNGLLHTGKTFKFPLYLIGAGIIDEDLHEL
DEAAPIDHPQMPDAKSVLPEDEEIFFGDTGVSKNPIELIQGWFSNWRESVMAIVGIVLLIVVTFLAIKTV
RVLNCLWRPRKKRIVRQEVDVESRLNHFEMRGFPEYVKR
Both sequences give best structural hit to CRYSTAL
STRUCTURE OF VSV-INDIANA (MUDD-SUMMERS STRAIN) GLYCOPROTEIN UNDER ITS
ACIDIC CONFORMATION
BLAST alignment is only 198 residues long, while CTX-BLAST output
(353 residues) covers the whole structural motiv.
******************** BLAST
OUTPUT *********************
>PF009740005
Length = 529
Score = 38.1 bits (87),
Expect = 8e-007
Identities = 43/198 (21%),
Positives = 83/198 (41%), Gaps =
16/198 (8%)
Query: 118
HKVLYRTICSTGFFGGQTIEKALVEMKLSTKEAGA----YDTTTAAALYFPAPRCQWYTD
173
H + T C ++G + I ++ ++ +T
+ Y + L
FP C Y
Sbjct: 78
HAAKWVTTCDFRWYGPKYITHSIHHLRPTTSDCETALQRYKDGSLINLGFPPESCG-YAT 136
Query: 174
NVQNDLIFYYTTQKSVLRDPYTRDFLDSDFIGGKCTKSPCQTHWSNVVWMGDAGIP--AC
231
++ + T V D Y ++D
F GG+C+ + C T ++ VW+ +
Sbjct: 137
VTDSEAMLVQVTPHHVGVDDYRGHWIDPLFPGGECSTNFCDTVHNSSVWIPKSQKTDICA
196
Query: 232
DSSQEIKGHLFVDK----ISNRVVKATSYGHHPWGLHQACMIEFCGKQWIRTDLGDL--I
285
S +
IK
+S+R ++Y H
C+++FC ++ +R G+ +
Sbjct: 197
QSFKNIKMTASYPSEGALVSDRFAFHSAY-HPNMPGSTVCIMDFCEQKGLRFTNGEWMGL
255
Query: 286 SVEYNSGAEILS--FPKC 301
+VE
+ + +S FP C
Sbjct: 256 NVEQSIREKKISAIFPNC 273
******************** CTX-BLAST OUTPUT *********************
>PF009740005
Length = 529
Score =
48.8 bits (82), Expect = 5e-010
Identities
= 56/353 (15%), Positives = 111/353 (31%), Gaps = 25/353 (7%)
Query: 111
HTQGNHIHKVLYRTICSTGFFGGQTIEKALVEMKLSTKEA----GAYDTTTAAALYFPAP
166
+
G H + T C ++G + I ++ ++
+T + Y + L
FP
Sbjct: 71
KSDGFICHAAKWVTTCDFRWYGPKYITHSIHHLRPTTSDCETALQRYKDGSLINLGFPPE 130
Query: 167
RCQWYTDNVQNDLIFYYTTQKSVLRDPYTRDFLDSDFIGGKCTKSPCQTHWSNVVWMGDA
226
C Y ++ + T
V D Y ++D F GG+C+ + C T ++ VW+ +
Sbjct: 131
SC-GYATVTDSEAMLVQVTPHHVGVDDYRGHWIDPLFPGGECSTNFCDTVHNSSVWIPKS
189
Query: 227
GIPACDSSQEIKGHLFVDKISNRVVKATSYGHHPWGLH------QACMIEFCGKQWIRTD
280
+Q K
+
+
H C+++FC ++ +R
Sbjct: 190
Q-KTDICAQSFKNIKMTASYPSEGALVSDRFAFHSAYHPNMPGSTVCIMDFCEQKGLRFT
248
Query: 281
LGDLISVEYNSGAEILSFPKCEDKTVGMRGNLDDFAYLDDLVKASESREE-----CLEAH
335
G+ +
+
V
E++ C
Sbjct: 249
NGEWMGLNVEQSIREKKISAIFPNCVAGTEIRATLESEGARTLTWETQRMLDYSLCQNTW
308
Query: 336
AEIISTNSVTPYLLSKFRSPHPGINDVYAMHKGSIYHGMCMTVA-------VDEVSKDRT
388
++ ++P LS
PG Y + G+++
+ + E+ R
Sbjct: 309
DKVSRKEPLSPLDLSYLSPRAPGKGMAYTVINGTLHSAHAKYIRTWIDYGEMKEIKGGRG
368
Query: 389
TYRAHRATSFTKWERPFGDEWEGFHGLHGNNTTIIPDLEKYVAQYKTSMMEPM 441
Y +++W
FG G +GL T
L A + +
Sbjct: 369
EYSKAPELLWSQW-FDFGPFKIGPNGLLHTGKTFKFPLYLIGAGIIDEDLHEL 420