Wydział Matematyki, Informatyki i Mechaniki Uniwersytetu Warszawskiego
Publications
Anna Gambin
2019
- Wojciech Jaworski, Sara Szymkuć, Barbara Mikulak-Klucznik, Krzysztof Piecuch, Tomasz Klucznik, Michal Kazmierowski, Jan Rydzewski, Anna Gambin and Bartosz Grzybowski, Automatic mapping of atoms across both simple and complex chemical reactions, Nature Communications 10 (1) 2019, p. 1434.see in PBN
- Grzegorz Dudziuk, Weronika Wronowska, Anna Gambin, Zuzanna Szymańska and Mikołaj Jakub Rybiński, Biologically sound formal model of Hsp70 heat induction, Journal Of Theoretical Biology 478 (7) 2019, p. 74–101.see in PBN
- Mateusz Krzysztof Łącki, Frederik Lermyte, Błażej Miasojedow, Michał Startek, Frank Sobott, Dirk Valkenborg and Anna Gambin, masstodon: A tool for assigning peaks and modeling electron transfer reactions in top-down mass spectrometry, Analytical Chemistry 0 (ja) 2019, p. null.see in PBN
- Victor Murcia Pienkowski, Marzena Kucharczyk, Marlena Młynek, Krzysztof Szczałuba, Małgorzata Rydzanicz, Barbara Poszewiecka, Agata Skórka, Maciej Sykulski, Anna Biernacka, Agnieszka Koppolu, Renata Posmyk, Anna Walczak, Joanna Kosińska, Paweł Krajewski, Jennifer Castaneda, Ewa Obersztyn, Elżbieta Jurkiewicz, Robert Śmigiel, Anna Gambin, Krystyna Chrzanowska, Małgorzata Krajewska-Walasek and Rafał Płoski, Mapping of breakpoints in balanced chromosomal translocations by shallow whole genome sequencing points to EFNA5, BAHD1 and PPP2R5E as novel candidates for genes causing human Mendelian disorders, Journal Of Medical Genetics 2019.see in PBN
2018
- P. Szafranski, E. Ko?mider, Q. Liu, J. A. Karolak, L. Currie, S. Parkash, S. G. Kahler, E. Roeder, R. O. Littlejohn, T. S. DeNapoli, F. R. Shardonofsky, C. Henderson, G. Powers, V. Poisson, D. Berube, L. Oligny, J. L. Michaud, S. Janssens, K. De Coen, J. Van Dorpe, A. Dheedene, M. T. Harting, M. D. Weaver, A. M. Khan, N. Tatevian, J. Wambach, K. A. Gibbs, E. Popek, Anna Gambin and Paweł Stankiewicz, LINE- and Alu-containing genomic instability hotspot at 16q24.1 associated with recurrent and nonrecurrent CNV deletions causative for ACDMPV, Human Mutation 39 (12) 2018, p. 1916–1925.see in PBN
- Szymon Majewski, Michał Ciach, Michał Startek, Wanda Niemyska, Błażej Miasojedow and Anna Gambin, The Wasserstein Distance as a Dissimilarity Measure for Mass Spectra with Application to Spectral Deconvolution, in: 18th International Workshop on Algorithms in Bioinformatics (WABI 2018), 2018, p. 25:1–25:21.see in PBN
- Barbara Poszewiecka, Paweł Stankiewicz, Tomasz Gambin and Anna Gambin, TADeus-a tool for clinical interpretation of structural variants modifying chromatin organization, in: 2018 IEEE International Conference on Bioinformatics and Biomedicine, 2018, p. 84–87.see in PBN
- Krzysztof Gogolewski, Marcin Kostecki and Anna Gambin, Renal cell carcinoma classification: a case study of pitfalls associated with metabolic landscape analysis, in: 2018 IEEE International Conference on Bioinformatics and Biomedicine, 2018, p. 96–101.see in PBN
- Krzysztof Gogolewski, Maciej Sykulski, Neo Christopher Chung and Anna Gambin, Truncated Robust Principal Component Analysis and Noise Reduction for Single Cell RNA-seq Data, in: International Symposium on Bioinformatics Research and Applications (ISBRA), 2018, p. 335–346.see in PBN
- Krzysztof Gogolewski and Anna Gambin, PCA-like Methods for the Integration of Single Cell RNA-seq Data with Metabolic Networks, in: 2018 IEEE 8th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), 2018, p. 1–1.see in PBN
- Anna Gambin and Monika Heiner, Advances in Biological processes and Petri nets (BioPPN) Preface, Fundamenta Informaticae 2018.see in PBN
2017
- Grzegorz Skoraczyński, Piotr Dittwald, Błażej Miasojedow, Sara Szymkuć, Ewa Gajewska, Bartosz Grzybowski and Anna Gambin, Predicting the outcomes of organic reactions via machine learning: are current descriptors sufficient?, Scientific Reports Of The Nature Publishing Group 7 (1) 2017.see in PBN
- Mateusz K Łącki, Michał Startek, Dirk Valkenborg and Anna Gambin, IsoSpec: Hyperfast Fine Structure Calculator, Analytical Chemistry 89 (6) 2017, p. 3272–3277.see in PBN
- Michał Startek, Jakub Nogły, Agnieszka Gromadka, Dariusz Grzebelus and Anna Gambin, Inferring transposons activity chronology by TRANScendence -- TEs database and de-novo mining tool, Bmc Bioinformatics 18 (12) 2017, p. 422.see in PBN
- Krzysztof Gogolewski, Weronika Wronowska, Agnieszka Lech, Bogdan Lesyng and Anna Gambin, Inferring Molecular Processes Heterogeneity from Transcriptional Data, Biomed Research International (journal Of Biomedicine And Biotechnology) 2017 2017, p. 6961786.see in PBN
- L. W. Bielczynski, Mateusz Łącki, I. Hoefnagels, Anna Gambin and R. Croce, Leaf and Plant Age Affects Photosynthetic Performance and Photoprotective Capacity, Plant Physiology 175 (4) 2017, p. 1634–1648.see in PBN
- M. A. Ciach, Mateusz Łącki, Błażej Miasojedow, F. Lermyte, D. Valkenborg, F. Sobott and Anna Gambin, Estimation of Rates of Reactions Triggered by Electron Transfer in Top-Down Mass Spectrometry, Journal Of Computational Biology 2017.see in PBN
2016
- Miao Zhang, Charles Guo, Tadeusz Majewski, Vipulkumar Dadhania, Maciej Sykulski, Weronika Wronowska, Woonyoung Choi, David McConkey, Colin Dinney and Anna Gambin, Immunohistochemical Profiles of Molecular Subtypes of Bladder Cancer, in: LABORATORY INVESTIGATION, 2016, p. 270A–270A.see in PBN
- A. V. Dharmadhikari, J. J. Sun, Krzysztof Gogolewski, B. L. Carofino, V. Ustiyan, M. Hill, T. Majewski, P. Szafranski, M. J. Justice, R. S. Ray, M. E. Dickinson, V. V. Kalinichenko, Anna Gambin and P. Stankiewicz, Lethal lung hypoplasia and vascular defects in mice with conditional Foxf1 overexpression, Biology Open 5 (11) 2016, p. 1595–1606.see in PBN
- F. Lermyte, M. K. ??cki, D. Valkenborg, Anna Gambin and F. Sobott, Conformational Space and Stability of ETD Charge Reduction Products of Ubiquitin, Journal Of The American Society For Mass Spectrometry 2016.see in PBN
- C. C. Guo, V. Dadhania, L. Zhang, T. Majewski, J. Bondaruk, M. Sykulski, W. Wronowska, Anna Gambin, Y. Wang, S. Zhang, E. Fuentes-Mattei, A. M. Kamat, C. Dinney, A. Siefker-Radtke, W. Choi, K. A. Baggerly, D. McConkey, J. N. Weinstein and B. Czerniak, Gene Expression Profile of the Clinically Aggressive Micropapillary Variant of Bladder Cancer, European Urology 70 (4) 2016, p. 611–620.see in PBN
- Charles C Guo, Vipulkumar Dadhania, Li Zhang, Jolanta Bondaruk, Tadeusz Majewski, Maciej Sykulski, Weronika Wronowska, Anna Gambin, Ashish Kamat and Colin Dinney, Molecular Characterization of Clinically Aggressive Micropapillary Bladder Cancer, in: LABORATORY INVESTIGATION, 2016, p. 235A–235A.see in PBN
2015
- Michał Startek, Przemyslaw Szafranski, Tomasz Gambin, Ian M. Campbell, Patricia Hixson, Chad A. Shaw, Paweł Stankiewicz and Anna Gambin, Genome-wide analyses of LINE–LINE-mediated nonallelic homologous recombination, Nucleic Acids Research 2015.see in PBN
- Weronika Wronowska, Agata Charzynska, Karol Nienałtowski and Anna Gambin, Computational modeling of sphingolipid metabolism, Bmc Systems Biology 9 2015, p. 47.see in PBN
- Krzysztof Stawujak, Michał Startek, Anna Gambin and Dariusz Grzebelus, MuTAnT: a family of Mutator-like transposable elements targeting TA microsatellites in Medicago truncatula, Genetica 143 (4) 2015, p. 433–440.see in PBN
- Piotr Dittwald, D. Valkenborg, J. Claesen, A. L. Rockwood and Anna Gambin, On the Fine Isotopic Distribution and Limits to Resolution in Mass Spectrometry, Journal Of The American Society For Mass Spectrometry 26 (10) 2015, p. 1732–1745.see in PBN
- Frederik Lermyte, Mateusz Krzysztof Łącki, Dirk Valkenborg, Geert Baggerman, Anna Gambin and Frank Sobott, Understanding reaction pathways in top-down ETD by dissecting isotope distributions: A mammoth task, International Journal Of Mass Spectrometry 390 2015, p. 146–154.see in PBN
- Agata Charzyńska and Anna Gambin, Improvement of the k-nn Entropy Estimator with Applications in Systems Biology, Entropy 18 (1) 2015, p. 13.see in PBN
2014
- Piotr Dittwald, V. T. Nghia, G. A. Harris, R. M. Caprioli, R. Van de Plas, K. Laukens, Anna Gambin and D. Valkenborg, Towards automated discrimination of lipids versus peptides from full scan mass spectra, Eupa Open Proteomics 4 2014, p. 87–100.see in PBN
- I. M. Campbell, Tomasz Gambin, Piotr Dittwald, C. R. Beck, A. Shuvarikov, P. Hixson, A. Patel, Anna Gambin, C. A. Shaw, J. A. Rosenfeld and P. Stankiewicz, Human endogenous retroviral elements promote genome instability via non-allelic homologous recombination, Bmc Biology 12 2014, p. 74.see in PBN
- P. Sen, A. V. Dharmadhikari, T. Majewski, M. A. Mohammad, T. V. Kalin, J. Zabielska, X. Ren, M. Bray, H. M. Brown, S. Welty, S. Thevananther, C. Langston, P. Szafranski, M. J. Justice, V. V. Kalinichenko, Anna Gambin, J. Belmont and Paweł Stankiewicz, Comparative analyses of lung transcriptomes in patients with alveolar capillary dysplasia with misalignment of pulmonary veins and in foxf1 heterozygous knockout mice, Plos One 9 (4) 2014, p. e94390.see in PBN
- Magdalena Bartnik, Beata Nowakowska, Katarzyna Derwińska, Barbara Wiśniowiecka-Kowalnik, Marta Kędzior, Joanna Bernaciak, Kamila Ziemkiewicz, Anna Gambin, Maciej Sykulski, Natalia Bezniakow, Lech Korniszewski, Anna Dorota Kutkowska-Kaźmierczak, Jakub Klapecki, Krzysztof Szczałuba, C. A. Shaw, Tadeusz Mazurczak, Anna Gambin, Ewa Obersztyn, Ewa Bocian and Paweł Stankiewicz, Application of array comparative genomic hybridization in 256 patients with developmental delay or intellectual disability, Journal Of Applied Genetics 55 (1) 2014, p. 125–144.see in PBN
- T. Jetka, A. Charzyńska, Anna Gambin, M. P. Stumpf and Michał Komorowski, StochDecomp--Matlab package for noise decomposition in stochastic biochemical systems, Bioinformatics 30 (1) 2014, p. 137–138.see in PBN
- A. V. Dharmadhikari, Tomasz Gambin, P. Szafranski, W. Cao, F. J. Probst, W. Jin, P. Fang, K. Gogolewski, Anna Gambin, J. K. George-Abraham, S. Golla, F. Boidein, B. Duban-Bedu, B. Delobel, J. Andrieux, K. Becker, E. Holinski-Feder, S. Cheung and P. Stankiewicz, Molecular and clinical analyses of 16q24.1 duplications involving FOXF1 identify an evolutionarily unstable large minisatellite, Bmc Medical Genetics 15 (1) 2014, p. 128.see in PBN
2013
- Tomasz Gambin, Paweł Stankiewicz, Maciej Sykulski and Anna Gambin, Functional performance of aCGH design for clinical cytogenetics, Computers In Biology And Medicine 43 2013, p. 775–785.see in PBN
- Anna Gambin, Agata Charzyńska, Aleksandra Ellert-Miklaszewska and Mikołaj Rybiński, Computational models of the JAK1/2-STAT1 signaling., Jak-stat 2 (3) 2013, p. e24672.see in PBN
- Piotr Dittwald, Jurgen Claesen, Tomasz Burzykowski, Dirk Valkenborg and Anna Gambin, BRAIN: A Universal Tool for High-Throughput Calculations of the Isotopic Distribution for Mass Spectrometry, Analytical Chemistry 2013, p. 1991–1994.see in PBN
- Piotr Dittwald, Tomasz Gambin, P. Szafranski, J. Li, S. Amato, M. Y. Divon, L. X. Rodriguez Rojas, L. E. Elton, D. A. Scott, C. P. Schaaf, W. Torres-Martinez, A. K. Stevens, J. A. Rosenfeld, S. Agadi, D. Francis, S. H. Kang, A. Breman, S. R. Lalani, C. A. Bacino, W. Bi, A. Milosavljevic, A. L. Beaudet, A. Patel, C. A. Shaw, J. R. Lupski, Anna Gambin, S. W. Cheung and Paweł Stankiewicz, NAHR-mediated copy-number variants in a clinical population: mechanistic insights into both genomic disorders and Mendelizing traits, Genome Research 23 (9) 2013, p. 1395–1409.see in PBN
- Michał Startek, Jarosław Paszek, Tomasz Gambin, Krzysztof Walczak, Dariusz Grzebelus and Anna Gambin, TIRfinder: A Web Tool for Mining Class II Transposons Carrying Terminal Inverted Repeats, Evolutionary Bioinformatics 9 2013, p. 17–27.see in PBN
- Mikołaj Jakub Rybiński, Zuzanna Szymańska, Sławomir Lasota and Anna Gambin, Modelling the efficacy of hyperthermia treatment, Journal Of The Royal Society Interface 10 (88) 2013, p. 1–10.see in PBN
- Claudia Carvalho, Piotr Dittwald, Tomasz Gambin, Claudia Gonzaga-Jauregui, James Lupski, Paweł Stankiewicz and Anna Gambin, Inverted Low-Copy Repeats and Genome Instability, Human Mutation 34 (1) 2013, p. 210–220.see in PBN
- Michał Startek, Arnaud Le Rouzic, Pierre Capy, Dariusz Grzebelus and Anna Gambin, Genomic parasites or symbionts? Modeling the effects of environmental pressure on transposition activity in asexual populations, Theoretical Population Biology 90 (Complete) 2013, p. 145–151.see in PBN
- Anna Gambin, J. Li, R.A. Harris, S.W. Cheung, C. Coarfa, M. Jeong, M.A. Goodell, L.D. White, A. Patel, S. H. Kang, C. Shaw, A.C. Chinault, Tomasz Gambin, J.R. Lupski and A. Milosavlevic, Confounding by Repetitive Elements and CpG Islands Does Not Explain the Association between Hypomethylation and Genomic Instability, Plos Genetics 9 (2) 2013.see in PBN
- Marta Smyk, Przemyslaw Szafranski, Michał Startek, Anna Gambin and Paweł Stankiewicz, Chromosome conformation capture-on-chip analysis of long-range cis-interactions of the SOX9 promoter, Chromosome Research 21 (8) 2013, p. 781–788.see in PBN
2012
- Anna Gambin and Mikołaj Rybiński, Model-based selection of the robust JAK-STAT activation mechanism, Journal Of Theoretical Biology 309 2012, p. 34–46.see in PBN
- Michał Startek, Sławomir Lasota, Maciej Sykulski, A. Bułak, L. Noé, G. Kucherov and Anna Gambin, Efficient alternatives to PSI-BLAST, Bulletin Of The Polish Academy Of Sciences-technical Sciences Vol. 60, nr 3 2012, p. 495–505.see in PBN
- Anna Gambin, Anna Marciniak-Czochra and Damian Niwiński, Alan Turing and Systems Biology, Ercim News 2012 (91) 2012.see in PBN
- Anna Gambin, Magdalena Bartnik, Elżbieta Szczepanik, Katarzyna Derwińska, Barbara Wiśniowiecka-Kowalnik, T. Gambin, Maciej Sykulski, K. Ziemkiewicz, Paweł Stankiewicz, Ewa Obersztyn, Ewa Bocian, Tadeusz Mazurczak, Hanna Mierzejewska, C.A. Shaw, M. Sobirajewicz, Iwona Terczyńska, Marta Kędzior, Monika Gos, Dorota Hoffman-Zacharska, A. Jeziorek, Dorota Antczak-Marach, M. Rudzka-Dybała, H. Mazurkiewicz, A. Goszczańska-Ciuchta and T. Zalewska-Miszkurka, Application of array comparative genomic hybridization in 102 patients with epilepsy and additional neurodevelopmental disorders, American Journal Of Medical Genetics Part B-neuropsychiatric Genetics 159B (6) 2012.see in PBN
- Barbara Wiśniowiecka-Kowalnik, Monika Kastory-Bronowska, Magdalena Bartnik, Katarzyna Derwińska, Wanda Dymczak-Domini, Dorota Szumbarska, Ewa Ziemka, Krzysztof Szczałuba, Maciej Sykulski, Tomasz Gambin, Anna Gambin, Chad Shaw, Tadeusz Mazurczak, Ewa Obersztyn, Ewa Bocian and Paweł Stankiewicz, Application of custom-designed oligonucleotide array CGH in 145 patients with autistic spectrum disorders, European Journal Of Human Genetics 1 (6) 2012, p. 620–625.see in PBN
- Anna Gambin, J. Li, R.A. Harris, S.W. Cheung, C. Coarfa, R.A. Lupski, M. Jeong, L. D. White, M.A. Goodell, S. H. Kang, C. Shaw, A. Patel, T. Gambin, A.C. Chinault and A. Milosavljevic, Genomic hypomethylation in the human germline associates with selective structural mutability in the human genome, Plos Genetics 8 (5) 2012.see in PBN
- Agata Charzyńska, Anna Nałęcz, Mikołaj Jakub Rybiński and Anna Gambin, Sensitivity analysis of mathematical models of signaling pathways, Biotechnologia 93 (3) 2012, p. 291–308.see in PBN
- Anna Gambin, Piotr Dittwald, Jerzy Ostrowski and Jakub Karczmarski, Inferring serum proteolytic activity from LC-MS/MS data, Bmc Bioinformatics 13 (5) 2012.see in PBN
- Paweł Banasik, Anna Gambin, Sławomir Lasota, Michał Lula and Mikołaj Rybiński, Tav4SB: integrating tools for analysis of kinetic models of biological systems, Bmc Systems Biology 6 (25) 2012.see in PBN
- Michał Startek, Sławomir Lasota, Maciej Sykulski, Adam Bułak, Laurent Noe, Gregory Kucherov and Anna Gambin, Efficient alternatives to PSI-BLAST, Bulletin Of The Polish Academy Of Sciences-technical Sciences 2012.see in PBN
- Katarzyna Derwińska, Magdalena Bartnik, Barbara Wiśniowiecka-Kowalnik, M. Jagła, A. Rudziński, Jacek Pietrzyk, Wanda Kawalec, L. Ziółkowska, Anna Dorota Kutkowska-Kaźmierczak, Anna Gambin, Tomasz Gambin, Maciej Sykulski, Tadeusz Mazurczak, Ewa Obersztyn, Ewa Bocian and Paweł Stankiewicz, Assessment of the role of copy-number variants in 150 patients with congenital heart defects, Developmental Period Medicine 16 (3) 2012, p. 175–182.see in PBN
- A. Charzynska, A. Nalecz, M. Rybinski and A. Gambin, Sensitivity analysis of mathematical models of signalling pathways, Biotechnologia 93 2012, p. Array.see in PBN
- Anna Gambin and Anna Marciniak-Czochra (eds.), Watching the Daisies Grow: from Biology to Biomathematics and Bioinformatics, IOS PRESS, NIEUWE HEMWEG 6B, AMSTERDAM, NETHERLANDS, 1013 BG 2012.see in PBN
2011
- Anna Gambin, Maciej Sykulski, Tomasz Gambin, Magdalena Bartnik and Katarzyna Derwińska, Efficient multiple samples aCGH analysis for rare CNVs detection, in: IEEE International Conference Bioinformatics and Biomedicine, 2011.see in PBN
- Anna Gambin, Piotr Dittwald, Jerzy Ostrowski and Jakub Karczmarski, Inferring serum proteolytic activity from LC, in: Proc. IEEE 1st International Conference on Computational Advances in Bio and medical Sciences (ICCABS), 2011.see in PBN
- Anna Gambin, Tomasz Gambin and Paweł Stankiewicz, A stable density approach to probe selection for a custom aCGH design, Biotechnologia 92 (3) 2011, p. 283–295.see in PBN
- Anna Gambin, Tomasz Gambin, Maciej Sykulski and Paweł Stankiewicz, Robustness of exon CGH array designs, in: Proc. Int Conf. on Bioinformatics Models, Methods and Algorithms Bioinformatics'11., 2011.see in PBN
- Anna Gambin and Michał Kistowski, Optimization algorithm for de novo analysis of tandem mass spectrometry data, Biotechnologia 92 (3) 2011, p. 296–300.see in PBN
- Anna Gambin, Maciej Sykulski, Sławomir Lasota, Michał Startek, Gregory Kucherov and Laurent Noe, Subset seed extension to protein BLAST, in: Proc. Int. Conf. on Bioinformatics Models, Methods and Algorithms Bioinformatics'11., 2011.see in PBN
- Anna Gambin, Sławomir Lasota, Michał Lula and Mikołaj Rybiński, Tav4SB: grid environment for analysis of kinetic models of biological systems, in: International Symposium on Bioinformatics Research and Applications (ISBRA), 2018.see in PBN
2009
- Dariusz Grzebelus, Mirosława Gładysz, Alicja Macko-Podgórni, Tomasz Gambin, Barbara Golis, Roksana Rakoczy and Anna Gambin, Population dynamics of miniature inverted-repeat transposable elements (MITEs) in Medicago truncatula, Gene 448 2009, p. 214–220.see in PBN
- Anna Gambin, Ewa Szczurek, Janusz Dutkowski, Magda Bakun and Michał Dadlez, Classification of peptide mass fingerprint data by novel no-regret boosting method, Computers In Biology And Medicine 39 2009, p. 460–473.see in PBN
- Marta Łuksza, Bogusław Kluge, Jerzy Ostrowski, Jakub Karczmarski and Anna Gambin, Two-Stage Model-Based Clustering for Liquid Chromatography Mass Spectrometry Data Analysis, Statistical Applications In Genetics And Molecular Biology 8 2009, p. 15.see in PBN
- Bogusław Kluge, Anna Gambin and Wojciech Niemiro, Modeling Exopeptidase Activity from LC-MS Data, Journal Of Computational Biology 16 (2) 2009, p. 395–406.see in PBN
- Jakub Karczmarski, Anna Gambin, Marta Łuksza, Jerzy Ostrowski and Bogusław Kluge, Two-Stage Model-Based Clustering for Liquid Chromatography Mass Spectrometry Data Analysis, Statistical Applications In Genetics And Molecular Biology 8 (1) 2009, p. 1–37.see in PBN
- Mikhail A. Roytberg, Anna Gambin, Laurent Noé, Sławomir Lasota, Eugenia Furletova, Ewa Szczurek and Gregory Kucherov, On Subset Seeds for Protein Alignment, Ieee-acm Transactions On Computational Biology And Bioinformatics 6 (3) 2009, p. 483–494.see in PBN
- Anna Gambin, D. Grzebelus, M. Gładysz, A. Macko-Podgórni, T. Gambin, B. Golis and R. Rakoczy, Population dynamics of miniature inverted-repeat transposable elements (MITEs) in Medicago truncatula, Gene 448 (2) 2009, p. 214–220.see in PBN
- Anna Gambin, E. Szczurek, J. Dutkowski, M. Bakun and Michał Dadlez, Classification of peptide mass fingerprint data by novel no-regret boosting method, Computers In Biology And Medicine 39 2009, p. 460–473.see in PBN
2008
- Anna Gambin, Piotr Krzyżanowski and Piotr Pokarowski, Aggregation Algorithms for Perturbed Markov Chains with Applications to Networks Modeling, Siam Journal On Scientific Computing 31 (1) 2008, p. 45–73.see in PBN
- Mikhail A. Roytberg, Anna Gambin, Laurent Noé, Sławomir Lasota, Eugenia Furletova, Ewa Szczurek and Gregory Kucherov, Efficient Seeding Techniques for Protein Similarity Search, in: BIRD, 2008.see in PBN
2007
- Łukasz Bolikowski and Anna Gambin, New Metrics for Phylogenies, Fundamenta Informaticae 78 (2) 2007, p. 199–216.see in PBN
- Anna Gambin, Janusz Dutkowski, Jakub Karczmarski, Bogusław Kluge, Krzysztof Kowalczyk, Jerzy Ostrowski, Jarosław Poznański, Jerzy Tiuryn, M. Bakun and Michał Lech Dadlez, Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal Of Mass Spectrometry 260 2007, p. 20–30.see in PBN
- D. Grzebelus, Sławomir Lasota, T. Gambin, G. Kucherov and Anna Gambin, Diversity and structure of PIF/Harbinger-like elements in the genome of Medicago truncatula, Bmc Genomics 8 2007, p. 409.see in PBN
- Anna Gambin and P. Wojtalewicz, CTX-BLAST - context sensitive version of protein BLAST, Bioinformatics 23 (13) 2007, p. 1686–1688.see in PBN
- Anna Gambin and Ewa Szczurek, No-regret boosting, Lecture Notes In Computer Science 4431 2007, p. 422–431.see in PBN
- Janusz Józef Dutkowski and Anna Gambin, On consensus biomarker selection, Bmc Bioinformatics 8 2007, p. S5.see in PBN
- Janusz Dutkowski and Anna Gambin, On consensus biomarker selection, Bmc Bioinformatics 8 (Suppl. 5) 2007, p. 1–13.see in PBN
- Dariusz Grzebelus, Sławomir Lasota, Tomasz Gambin, Gregory Kucherov and Anna Gambin, Diversity and structure of PIF/Harbinger-like elements in the genome of Medicago truncatula, Bmc Genomics 8 2007, p. 409.see in PBN
- Mikołaj Rybiński and Anna Gambin, Details of the JAK-STAT Signaling Pathway Model, Acta Biochimica Polonica 54 (Suppl. 3) 2007, p. 63–64.see in PBN
- Anna Gambin, Janusz Dutkowski, Jakub Karczmarski, Bogusław Kluge, Krzysztof Kowalczyk, Jerzy Ostrowski, Jarosław Poznański, Jerzy Tiuryn, Magda Bakun and Michał Dadlez, Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal Of Mass Spectrometry 260 2007, p. 20–30.see in PBN
- Ł. Bolikowski and A. Gambin, New Metrics for Phylogenies, Fundamenta Informaticae Vol. 78, nr 2 2007, p. 199–216.see in PBN
2006
- Marta Łuksza, Bogusław Kluge, Jerzy Ostrowski, Jakub Karczmarski and Anna Gambin, Efficient Model-Based Clustering for LC-MS Data, Lecture Notes In Computer Science 4175 2006, p. 32–43.see in PBN
- Anna Gambin, Janusz Dutkowski, Jakub Karczmarski, Bogusław Kluge, K. Kowalczyk, J Ostrowski, Jarosław Poznański, Jerzy Tiuryn, M. Bakun and Michał Dadlez, Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal Of Mass Spectrometry 260 2006, p. 20–30.see in PBN
- Anna Gambin, Sławomir Lasota and Michal Rutkowski, Analyzing stationary states of gene regulatory network using Petri nets, In Silico Biology 6 2006, p. 10.see in PBN
- Anna Gambin, K. Bożek, Bartosz Wilczynski and Jerzy Tiuryn, Automated modeling of genetic control in Arabidopsis thaliana, Journal Of Fruit And Ornamental Plant Research 14 2006, p. 163–171.see in PBN
- Anna Gambin, Jerzy Tiuryn and Jerzy Tyszkiewicz, Alignment with context dependent scoring function, Journal Of Computational Biology 13 (1) 2006, p. 81–101.see in PBN
- Katarzyna Bozek, Anna Gambin, Bartosz Wilczyński and Jerzy Tiuryn, Automated modelling of genetic control in Arabidopsis thaliana, Journal Of Fruit And Ornamental Plant Research 14 2006.see in PBN
- Norbert Dojer, Anna Gambin, A. Mizera, Bartosz Wilczyński and Jerzy Tiuryn, Applying Dynamic Bayesian Networks to Perturbed Gene Expression Data, Bmc Bioinformatics 7 2006, p. 249.see in PBN
- Anna Gambin, Janusz Dutkowski, Jakub Karczmarski, Bogusław Kluge, K. Kowalczyk, J. Ostrowski, J. Poznanski, Jerzy Tiuryn, M. Bakun and M. Dadlez, Automated reduction and interpretation of multidimensional mass spectra for analysis of complex peptide mixtures, International Journal Of Mass Spectrometry 260 (1) 2006, p. 20–30.see in PBN
2005
- Anna Gambin and Damian Wójtowicz, Almost FPRAS for Lattice Models of Protein Folding (Extended Abstract), Lecture Notes In Computer Science 3503 2005, p. 534–544.see in PBN
- Anna Gambin and Piotr Slonimski, Hierarchical clustering based upon contextual alignment of proteins: a different way to approach phylogeny, Comptes Rendus Biologies 328 (1) 2005, p. 11–22.see in PBN
- Anna Gambin and Rafał Otto, Contextual multiple sequence alignment, Journal Of Biomedicine And Biotechnology 2 2005, p. 124–131.see in PBN
- Anna Gambin, Jan Hidders, Natalia Kwaśnikowska, Sławomir Lasota, Jacek Sroka, Jerzy Paweł Tyszkiewicz and Jan Van den Bussche, Well Constructed Workflows in Bioinformatics, in: Proc. Workshop on Database Issues in Biological Databases 2005, 2005.see in PBN
2004
- Anna Gambin and Bronisław Kluge, Statistical Significance of Contextual Alignment, in: Proc. 4th European Conference on Computational Biology ECCB 2004, University of Glasgow, Glasgow 2004.see in PBN
- Anna Gambin and Piotr Slonimski, Hierarchical clustering based upon contextual alignment of proteins: a different way to approach phylogeny, in: Comptes Rendus Biologies, Academie des Sciences, Paris 2004.see in PBN
2003
- Anna Gambin and Damian Wójtowicz, Almost FPRAS for Lattice Models of Protein Folding, in: Currents in Computational Molecular Biology 2003, Berlin 2003.see in PBN
- Rafał Otto and Anna Gambin, Contextual Multiple Sequence Alignment (Context helps in aligning orphan genes, in: Currents in Computational Molecular Biology 2003, RECOMB, Berlin 2003.see in PBN
2002
- Anna Gambin, Sławomir Lasota, Radosław Szklarczyk, Jerzy Tiuryn and Jerzy Tyszkiewicz, Contextual Alignment of Biological Sequences, Bioinformatics 18 (2) 2002, p. 116–127.see in PBN
- Anna Gambin and Jerzy Tyszkiewicz, Substitution tables for contextual alignment, in: Journees Ouvertes Biologie Informatique Mathematique, INRIA, Rennes 2002.see in PBN
2001
- Anna Gambin, Sławomir Lasota and M. Dietzfelbinger, On different models for packet flow in multistage interconnection networks, Fundamenta Informaticae 46 (4) 2001, p. 287–314.see in PBN
- Piotr Pokarowski and Anna Gambin, A new combinatorial algorithm for large Markov chains., in: Computer Algebra in Scientific Computing-CASC 2001, Springer-Verlag, Berlin 2001.see in PBN
- Anna Gambin and Piotr Pokarowski, A Combinatorial Aggregation Algorithm for Stationary Distribution of a Large Markov Chain (Extended Abstract), Lecture Notes In Computer Science 2138 2001, p. 384–388.see in PBN
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