Wydział Matematyki, Informatyki i Mechaniki Uniwersytetu Warszawskiego
Publications
Bartosz Wilczyński
2018
- Agnieszka Kikulska, Tobias Rausch, Ewa Krzywinska, Magdalena Pawlak, Bartosz Wilczyński, Vladimir Benes, Piotr Rutkowski and Tomasz Wilanowski, Coordinated expression and genetic polymorphisms in Grainyhead-like genes in human non-melanoma skin cancers, Bmc Cancer 18 (1) 2018, p. 23.see in PBN
- Alina Frolova and Bartosz Wilczyński, Distributed Bayesian networks reconstruction on the whole genome scale, Peerj 6 2018, p. e5692.see in PBN
- I De Toma, Ilona Grabowicz, M Fructuoso, D Trujillano, Bartosz Wilczyński and M Dierssen, Overweighed mice show coordinated homeostatic and hedonic transcriptional response across brain, Eneuro 2018, p. ENEURO–0287.see in PBN
2017
- Rafał Archacki, Ruslan Yatusevich, Daniel Buszewicz, Katarzyna Krzyczmonik, Jacek Patryn, Roksana Iwanicka-Nowicka, Przemysław Biecek, Bartek Wilczyński, Marta Koblowska, Andrzej Jerzmanowski and Szymon Świeżewski, Arabidopsis SWI/SNF chromatin remodeling complex binds both promoters and terminators to regulate gene expression., Nucleic Acids Research 45 (7) 2017, p. 3116–3129.see in PBN
- Julia Danuta Herman-Iżycka, Michal Wlasnowolski and Bartosz Wilczyński, Taking promoters out of enhancers in sequence based predictions of tissue-specific mammalian enhancers, Bmc Medical Genomics 10 (1) 2017, p. 34.see in PBN
- Magdalena Pawlak, Agnieszka Kikulska, Tomasz Wrzesinski, Tobias Rausch, Zbigniew Kwias, Bartosz Wilczyński, Vladimir Benes, Joanna Wesoły and Tomasz Wilanowski, Potential protective role of Grainyhead-like genes in the development of clear cell renal cell carcinoma, Molecular Carcinogenesis 56 (11) 2017, p. 2414–2423.see in PBN
- Henri Niskanen, Irina Tuszyńska, Rafał Zaborowski, Merja Heinäniemi, Seppo Ylä-Herttuala, Bartosz Wilczyński and Minna U Kaikkonen, Endothelial cell differentiation is encompassed by changes in long range interactions between inactive chromatin regions, Nucleic Acids Research 2017.see in PBN
2015
- MICHAŁ DĄBROWSKI, Norbert Dojer, Izabella Krystkowiak, Bożena Kamińska and Bartosz Wilczyński, Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data, Bmc Bioinformatics 16 2015, p. art.nr140.see in PBN
- Yiliang Wei, Shamba S. Mondal, Rima Mouawad, Bartek Wilczyński, R. William Henry and David N. Arnosti, Genome-Wide Analysis of Drosophila RBf2 Protein Highlights the Diversity of RB Family Targets and Possible Role in Regulation of Ribosome Biosynthesis, G3-genes Genomes Genetics 5 (7) 2015, p. 1503–1515.see in PBN
- Kinga Rutowicz, Marcin Puzio, Joanna Halibart-Puzio, Maciej Lirski, Maciej Kotliński, Magdalena Kroteń, Łukasz Kniżewski, Bartosz Lange, Anna Muszewska, Katarzyna Śniegowska-Świerk, Janusz Kościelak, Roksana Iwanicka-Nowicka, Krisztian Buza, Franciszek Janowiak, Katarzyna Żmuda, Jõesaar Indrek, Katarzyna Laskowska-Kaszub, Anna Fogtman, Hannes Kollist, Piotr Zielenkiewicz, Jerzy Tiuryn, Paweł Siedlecki, Szymon Świeżewski, Krzysztof Ginalski, Marta Koblowska, Rafał Archacki, Bartosz Wilczyński, Marcin Rapacz and Andrzej Jerzmanowski, A Specialized Histone H1 Variant Is Required for Adaptive Responses to Complex Abiotic Stress and Related DNA Methylation in Arabidopsis., Plant Physiology 169 (3) 2015, p. 2080–2101.see in PBN
- Krisztián Buza, Bartosz Wilczyński and Norbert Dojer, RECORD: Reference-Assisted Genome Assembly for Closely Related Genomes, International Journal Of Genomics 2015 (2015) 2015, p. 1–10.see in PBN
2013
- Agnieszka Podsiadlo, Mariusz Wrzesień, Wiesław Paja, Witold Rudnicki and Bartosz Wilczyński, Active enhancer positions can be accurately predicted from chromatin marks and collective sequence motif data, Bmc Systems Biology 7 (Supplement 6) 2013, p. 1–7.see in PBN
- Norbert Dojer, Paweł Bednarz, Agnieszka Podsiadlo and Bartosz Wilczyński, BNFinder2: Faster Bayesian network learning and Bayesian classification, Bioinformatics 29 (16) 2013, p. 2068–2070.see in PBN
2012
- Bartosz Wilczyński, Ya-Hsin Liu, Zhen-Xuan Yeo and Eileen EM Furlong, Predicting Spatial and Temporal Gene Expression Using an Integrative Model of Transcription Factor Occupancy and Chromatin State, Plos Computational Biology 8 (12) 2012, p. e1002798.see in PBN
- Stefan Bonn, Robert P Zinzen, Charles Girardot, E Hilary Gustafson, Alexis Perez-Gonzalez, Nicolas Delhomme, Yad Ghavi-Helm, Bartek Wilczynski, Andrew Riddell and Eileen E M Furlong, Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development, Nature Genetics 44 (2) 2012, p. 148–156.see in PBN
- Paweł Bednarz and Bartosz Wilczyński, Modeling Cell Populations in Development using Individual Stochastic Regulatory Networks, in: SIMULTECH, 2012.see in PBN
2009
- Bartosz Wilczyński and Norbert Dojer, BNFinder: Exact and efficient method for learning Bayesian networks, Bioinformatics 25 (2) 2009, p. 286–287.see in PBN
- Bartosz Wilczyński, Norbert Dojer, Mateusz Patelak and Jerzy Tiuryn, Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs, Bmc Bioinformatics 10 2009, p. 82.see in PBN
- Peter J. A. Cock, Tiago Antao, Jeffrey T. Chang, Brad A. Chapman, Cymon J. Cox, Andrew Dalke, Iddo Friedberg, Thomas Hamelryck, Frank Kauff, Bartosz Wilczyński and Michiel J. L. de Hoon, Biopython: freely available Python tools for computational molecular biology and bioinformatics., Bioinformatics 25 (11) 2009, p. 1422–1423.see in PBN
- Bartosz Wilczyński and Eileen Furlong, Challenges for modeling global gene regulatory networks during development: Insights from Drosophila, Developmental Biology 10 (2) 2009, p. 32.see in PBN
2006
- Norbert Dojer, Anna Gambin, A. Mizera, Bartosz Wilczyński and Jerzy Tiuryn, Applying Dynamic Bayesian Networks to Perturbed Gene Expression Data, Bmc Bioinformatics 7 2006, p. 249.see in PBN
- Bartek Wilczyński and Jerzy Tiuryn, Regulatory Network Reconstruction using Stochastic Logical Networks, Lecture Notes In Computer Science 4210 2006, p. 142–154.see in PBN
- Katarzyna Bozek, Anna Gambin, Bartosz Wilczyński and Jerzy Tiuryn, Automated modelling of genetic control in Arabidopsis thaliana, Journal Of Fruit And Ornamental Plant Research 14 2006.see in PBN
- Bartek Wilczyński, Tr. Hvidsten, A. Kryshtafovych, Jerzy Tiuryn, J. Komorowski and K. Fidelis, Using local gene expression similarities to discover regulatory binding site modules, Bmc Bioinformatics 7 2006, p. 505.see in PBN
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