Paweł Górecki - publications

  • Paweł Górecki and Oliver Eulenstein Deep Coalescence Reconciliation with Unrooted Gene Trees: Linear Time Algorithms, accepted to COCOON 2012
  • Paweł Górecki and Oliver Eulenstein, Algorithms: Simultaneous Error-Correction and Rooting for Gene Tree Reconciliation and the Gene Duplication Problem, to appear in BMC Bionformatics, 2012
  • Paweł Górecki, J. Gordon Burleigh and Oliver Eulenstein GTP supertrees from unrooted gene trees: linear time algorithms for NNI based local searches, (ISBRA 2012), LNCS 7292, 115-126, 2012
  • Paweł Górecki and Oliver Eulenstein, A Robinson-Foulds measure to compare unrooted trees with rooted trees (ISBRA 2012), LNCS 7292, 102-114, 2012
  • Paweł Górecki and Jerzy Tiuryn, Inferring evolutionary scenarios in the duplication, loss and horizontal gene transfer model, LNCS 7230, 83-105, 2012
  • Paweł Górecki and Oliver Eulenstein, A linear time algorithm for error-corrected reconciliation of unrooted gene trees, 2011, LNBI, Vol.6674, 148-159 (ISBRA 2011) Supplementary data
  • Paweł Górecki, Gordon J. Burleigh and Oliver Eulenstein, Maximum likelihood models and algorithms for gene tree evolution with duplications and losses BMC Bioinformatics 2011, 12(Suppl. 1):S15 Supplementary data and DrML (software). This paper with corrected figures (PDF).
  • Paweł Górecki, H-trees: a model of evolutionary scenario with horizontal gene transfer, Fundamenta Informaticae, 103(1-4), pp. 105-128, 2010
  • Ilka M. Axmann, Paweł Górecki and Szymon M.Kiełbasa, Following the Evolution of Regulatory Elements in Marine Cyanobacteria, IBSB 2007, Tokyo, Japan (poster session)
  • Paweł Górecki and Jerzy Tiuryn, URec: a system for unrooted reconciliation, Bioinformatics 2007 23(4):511-512 Software (URec) and data
  • Paweł Górecki and Jerzy Tiuryn, Inferring phylogeny from whole genomes, Bioinformatics 2007 23: e116-e122 (Proc. of ECCB 2006)
  • Paweł Górecki and Jerzy Tiuryn, DLS-trees: a model of evolutionary scenarios, Theoretical Computer Science, Vol. 359, 2006, Pages 378-399
  • Paweł Górecki, Detection of horizontal gene transfer, PhD thesis, Warsaw, January 2006
  • Paweł Górecki and Jerzy Tiuryn, Reconciling gene and species evolution in the presence of horizontal gene transfer, ECCB 2005, Madrid (poster session)
  • Paweł Górecki and Jerzy Tiuryn, On the structure of reconciliations, 2005, LNCS, vol. 3388, pg. 42-54, (Proceedings of RCG 2004)
  • Paweł Górecki, Reconciliation problems for duplication, loss and horizontal gene transfer, Proceedings of the Eighth Annual International Conference on Research in Computational Molecular Biology (RECOMB 2004), 2004, San Diego, USA
  • Paweł Górecki, Single step reconciliation algorithm for duplication, loss and horizontal gene transfer model, Proceedings of the European Conference on Computational Biology, (ECCB 2003), Sept. 27-30, 2003, Paris, France
  • Paweł Górecki, Maximum likelihood estimation for duplication-loss model, Currents in Computational Molecular Biology 2003, RECOMB 2003, Berlin (poster session)
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